Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011230.1

Orthogroup ID

OG0012880

Physical Location & Seq

Genomic Coordinates Reverse (-)

672 .. 1523

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011230.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgcccactagtactactcctcctgaagtttccgagatgaaacggccgagactaatccagagcatgcctgctgcttacccaccgccatcctctgccgacccgcttccctgcccgcgctgcaactccacccagacgaagttctgctactacaacaactacaacctcgctcagccccgccacttctgcaagggctgccgccgctactggactcgtggtggggccctccgcaacgtccccgtcggcggcggaactcgcaacaagaaacccaaactccctcatcgcgcctcctcctccaactcctccagctcgccttcctcttcgtccctcacccacgagaccaccgcaccgaacaaacccacttccgactccgctgtggaaaagcccgatttgccctccgaccaacaaccacaacaacaacaacttctcaacctgaacgacaacgttacgagtgaaggagggttttcgtttctgacgatgatgaacgctcaggaacaacctgggtttttgtcccttggtgggtatgggtacgggtcggggtttgcccatgggttccagcaaggttacgggtacggcgccagagccgcaggggttgattttccgatggagatggccggtgcttttgctggtgtctatggtgtttctggggctgctacttcttccggggttgacatcaacacgtggcagatggcggttgctgatcatgaaggtcaaggtggtggattggttgattggccgggggttcagattctcgattccgtgccagctgtcagtggtggtggtggtggtgtcaaggaagaaaaggtggcagctgatccctcaactgacccttgtcttaatttccctgcattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

283

Amino Acids

29.83

Weight (kDa)

6.51

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47655
fragaria_vesca	FvH4_2g40660
malus_domestica	MD08G1040100.v1.1 MD15G1034500.v1.1
prunus_persica	Prupe.1G388600_v2.0.a1 Prupe.1G388600_v2.0.a1
pyrus_communis	pycom08g03230 pycom15g03180
rosa_chinensis	RchiOBHm_Chr6g0300001
rosa_laevigata	RLG00000011373
rosa_multiflora	Rmu_sc0001370.1_g000002 Rmu_sc0011230.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168210
rosa_rugosa	Rorug06G0293400
rosa_samantha	Rh6AG405100 Rh6BG413400 Rh6CG420500 Rh6DG406100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	572
AccII	CGCG	2 cut(s)	115, 282
AclI	AACGTT	1 cut(s)	441
AclWI	GGATC	1 cut(s)	806
AcoI	YGGCCR	3 cut(s)	44, 609, 731
AcuI	CTGAAG	1 cut(s)	45
AcvI	CACGTG	1 cut(s)	678
AcyI	GRCGYC	1 cut(s)	573
AfaI	GTAC	3 cut(s)	13, 527, 569
AfiI	CCNNNNNNNGG	2 cut(s)	242, 516
AflIII	ACRYGT	1 cut(s)	675
AhlI	ACTAGT	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	496
AluBI	AGCT	3 cut(s)	306, 764, 809
AluI	AGCT	3 cut(s)	306, 764, 809
Alw26I	GTCTC	2 cut(s)	43, 329
AlwI	GGATC	1 cut(s)	806
AoxI	GGCC	4 cut(s)	44, 219, 609, 731
ApaI	GGGCCC	1 cut(s)	223
ApeKI	GCWGC	5 cut(s)	71, 117, 192, 647, 806
AspLEI	GCGC	3 cut(s)	117, 284, 575
AspS9I	GGNCC	2 cut(s)	219, 220
AsuC2I	CCSGG	2 cut(s)	661, 735
AsuHPI	GGTGA	1 cut(s)	319
BaeGI	GKGCMC	1 cut(s)	223
BanI	GGYRCC	1 cut(s)	572
BanII	GRGCYC	1 cut(s)	223
BarI	GAAGNNNNNNTAC	2 cut(s)	128, 160
BauI	CACGAG	2 cut(s)	210, 332
BbrPI	CACGTG	1 cut(s)	678
BbvI	GCAGC	5 cut(s)	58, 104, 179, 634, 818
BccI	CCATC	4 cut(s)	94, 595, 601, 679
BceAI	ACGGC	2 cut(s)	59, 586
BciT130I	CCWGG	1 cut(s)	498
BclI	TGATCA	1 cut(s)	697
BcnI	CCSGG	2 cut(s)	661, 735
BcoDI	GTCTC	2 cut(s)	43, 329
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	576
BisI	GCNGC	9 cut(s)	72, 118, 193, 196, 199, 244, 582, 648, 807
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	9 cut(s)	73, 119, 194, 197, 200, 245, 583, 649, 808
BmcAI	AGTACT	1 cut(s)	13
Bme1390I	CCNGG	3 cut(s)	498, 661, 735
BmgT120I	GGNCC	2 cut(s)	219, 220
BmiI	GGNNCC	4 cut(s)	220, 221, 551, 574
BmrFI	CCNGG	3 cut(s)	498, 661, 735
BoxI	GACNNNNGTC	1 cut(s)	828
BpmI	CTGGAG	1 cut(s)	286
Bpu10I	CCTNAGC	1 cut(s)	486
Bpu1102I	GCTNAGC	1 cut(s)	168
BpuMI	CCSGG	2 cut(s)	661, 735
BsaAI	YACGTR	1 cut(s)	678
BsaHI	GRCGYC	1 cut(s)	573
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	5 cut(s)	497, 511, 544, 660, 734
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 255, 285
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 516
Bse118I	RCCGGY	1 cut(s)	611
Bse1I	ACTGG	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	5 cut(s)	497, 511, 544, 660, 734
BseGI	GGATG	1 cut(s)	86
BseLI	CCNNNNNNNGG	2 cut(s)	242, 516
BseMII	CTCAG	2 cut(s)	182, 500
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	4 cut(s)	9, 277, 280, 289
BseSI	GKGCMC	1 cut(s)	223
BseX3I	CGGCCG	1 cut(s)	44
BseXI	GCAGC	5 cut(s)	58, 104, 179, 634, 818
Bsh1236I	CGCG	2 cut(s)	115, 282
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	4 cut(s)	46, 221, 611, 733
BshNI	GGYRCC	1 cut(s)	572
BsiEI	CGRYCG	1 cut(s)	47
BsiSI	CCGG	3 cut(s)	612, 660, 734
BslFI	GGGAC	3 cut(s)	218, 307, 493
BslI	CCNNNNNNNGG	2 cut(s)	242, 516
BsmAI	GTCTC	2 cut(s)	43, 329
BsmFI	GGGAC	3 cut(s)	218, 307, 493
BsmI	GAATGC	1 cut(s)	845
BsnI	GGCC	4 cut(s)	46, 221, 611, 733
Bso31I	GGTCTC	1 cut(s)	329
Bsp120I	GGGCCC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	697, 811
Bsp1720I	GCTNAGC	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	544
BspANI	GGCC	4 cut(s)	46, 221, 611, 733
BspCNI	CTCAG	2 cut(s)	181, 499
BspFNI	CGCG	2 cut(s)	115, 282
BspHI	TCATGA	1 cut(s)	700
BspLI	GGNNCC	4 cut(s)	220, 221, 551, 574
BspPI	GGATC	1 cut(s)	806
BspT107I	GGYRCC	1 cut(s)	572
BspTNI	GGTCTC	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	611
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	611
BssECI	CCNNGG	5 cut(s)	497, 511, 544, 660, 734
BssMI	GATC	2 cut(s)	697, 811
BssNI	GRCGYC	1 cut(s)	573
BssSI	CACGAG	2 cut(s)	210, 332
BssT1I	CCWWGG	2 cut(s)	511, 544
Bst2BI	CACGAG	2 cut(s)	210, 332
Bst2UI	CCWGG	1 cut(s)	498
Bst6I	CTCTTC	1 cut(s)	322
BstACI	GRCGYC	1 cut(s)	573
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	678
BstC8I	GCNNGC	5 cut(s)	65, 69, 113, 308, 762
BstDEI	CTNAG	2 cut(s)	168, 486
BstDSI	CCRYGG	1 cut(s)	544
BstF5I	GGATG	1 cut(s)	86
BstFNI	CGCG	2 cut(s)	115, 282
BstH2I	RGCGCY	1 cut(s)	576
BstHHI	GCGC	3 cut(s)	117, 284, 575
BstKTI	GATC	2 cut(s)	700, 814
BstMAI	GTCTC	2 cut(s)	43, 329
BstMBI	GATC	2 cut(s)	697, 811
BstMCI	CGRYCG	1 cut(s)	47
BstMWI	GCNNNNNNNGC	7 cut(s)	117, 183, 192, 198, 252, 388, 581
BstNI	CCWGG	1 cut(s)	498
BstNSI	RCATGY	1 cut(s)	67
BstPAI	GACNNNNGTC	1 cut(s)	828
BstSCI	CCNGG	3 cut(s)	496, 659, 733
BstSLI	GKGCMC	1 cut(s)	223
BstUI	CGCG	2 cut(s)	115, 282
BstV1I	GCAGC	5 cut(s)	58, 104, 179, 634, 818
BstZI	CGGCCG	1 cut(s)	44
BsuRI	GGCC	4 cut(s)	46, 221, 611, 733
BtgI	CCRYGG	1 cut(s)	544
BtgZI	GCGATG	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	775
Cac8I	GCNNGC	5 cut(s)	65, 69, 113, 308, 762
CciI	TCATGA	1 cut(s)	700
CfoI	GCGC	3 cut(s)	117, 284, 575
Cfr10I	RCCGGY	1 cut(s)	611
Cfr13I	GGNCC	2 cut(s)	219, 220
Csp6I	GTAC	3 cut(s)	12, 526, 568
CviAII	CATG	3 cut(s)	64, 545, 701
CviQI	GTAC	3 cut(s)	12, 526, 568
DdeI	CTNAG	2 cut(s)	168, 486
DinI	GGCGCC	1 cut(s)	574
DpnI	GATC	2 cut(s)	699, 813
DpnII	GATC	2 cut(s)	697, 811
EaeI	YGGCCR	3 cut(s)	44, 609, 731
EagI	CGGCCG	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
EciI	GGCGGA	1 cut(s)	261
EclXI	CGGCCG	1 cut(s)	44
Eco130I	CCWWGG	2 cut(s)	511, 544
Eco24I	GRGCYC	1 cut(s)	223
Eco31I	GGTCTC	1 cut(s)	329
Eco52I	CGGCCG	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	45
Eco72I	CACGTG	1 cut(s)	678
EcoO109I	RGGNCCY	2 cut(s)	219, 220
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	2 cut(s)	511, 544
EcoT38I	GRGCYC	1 cut(s)	223
EgeI	GGCGCC	1 cut(s)	574
EheI	GGCGCC	1 cut(s)	574
ErhI	CCWWGG	2 cut(s)	511, 544
FaeI	CATG	3 cut(s)	67, 548, 704
FaiI	YATR	5 cut(s)	65, 522, 546, 633, 702
FaqI	GGGAC	3 cut(s)	218, 307, 493
FatI	CATG	3 cut(s)	63, 544, 700
FauI	CCCGC	3 cut(s)	108, 120, 182
FbaI	TGATCA	1 cut(s)	697
Fnu4HI	GCNGC	9 cut(s)	72, 118, 193, 196, 199, 244, 582, 648, 807
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	9 cut(s)	72, 118, 193, 196, 199, 244, 582, 648, 807
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	3 cut(s)	116, 283, 574
GluI	GCNGC	9 cut(s)	72, 118, 193, 196, 199, 244, 582, 648, 807
GsuI	CTGGAG	1 cut(s)	286
HaeII	RGCGCY	1 cut(s)	576
HaeIII	GGCC	4 cut(s)	46, 221, 611, 733
HapII	CCGG	3 cut(s)	612, 660, 734
HhaI	GCGC	3 cut(s)	117, 284, 575
Hin1I	GRCGYC	1 cut(s)	573
Hin1II	CATG	3 cut(s)	67, 548, 704
Hin6I	GCGC	3 cut(s)	115, 282, 573
HinP1I	GCGC	3 cut(s)	115, 282, 573
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HinfI	GANTC	4 cut(s)	208, 365, 745, 752
HpaII	CCGG	3 cut(s)	612, 660, 734
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188I	TCNGA	7 cut(s)	34, 364, 397, 471, 600, 744, 851
Hpy188III	TCNNGA	5 cut(s)	23, 58, 488, 701, 749
Hpy8I	GTNNAC	1 cut(s)	667
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	321, 446, 698
HpyCH4IV	ACGT	3 cut(s)	231, 441, 677
HpyCH4V	TGCA	3 cut(s)	120, 186, 845
HpyF10VI	GCNNNNNNNGC	7 cut(s)	117, 183, 192, 198, 252, 388, 581
HpyF3I	CTNAG	2 cut(s)	168, 486
HpySE526I	ACGT	3 cut(s)	231, 441, 677
Hsp92I	GRCGYC	1 cut(s)	573
Hsp92II	CATG	3 cut(s)	67, 548, 704
HspAI	GCGC	3 cut(s)	115, 282, 573
KasI	GGCGCC	1 cut(s)	572
Ksp22I	TGATCA	1 cut(s)	697
Kzo9I	GATC	2 cut(s)	697, 811
Lsp1109I	GCAGC	5 cut(s)	58, 104, 179, 634, 818
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	3 cut(s)	231, 441, 677
MaeIII	GTNAC	2 cut(s)	442, 560
MalI	GATC	2 cut(s)	699, 813
MboI	GATC	2 cut(s)	697, 811
MboII	GAAGA	3 cut(s)	309, 648, 806
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	1 cut(s)	835
Mly113I	GGCGCC	1 cut(s)	573
MlyI	GAGTC	2 cut(s)	202, 359
MmeI	TCCRAC	3 cut(s)	318, 387, 420
MseI	TTAA	1 cut(s)	834
MspA1I	CMGCKG	3 cut(s)	371, 764, 809
MspI	CCGG	3 cut(s)	612, 660, 734
MspR9I	CCNGG	3 cut(s)	498, 661, 735
Mva1269I	GAATGC	1 cut(s)	845
MvaI	CCWGG	1 cut(s)	498
MvnI	CGCG	2 cut(s)	115, 282
MwoI	GCNNNNNNNGC	7 cut(s)	117, 183, 192, 198, 252, 388, 581
NarI	GGCGCC	1 cut(s)	573
NciI	CCSGG	2 cut(s)	661, 735
NcoI	CCATGG	1 cut(s)	544
NdeII	GATC	2 cut(s)	697, 811
NlaIII	CATG	3 cut(s)	67, 548, 704
NlaIV	GGNNCC	4 cut(s)	220, 221, 551, 574
NmeAIII	GCCGAG	1 cut(s)	72
NspI	RCATGY	1 cut(s)	67
PaeI	GCATGC	1 cut(s)	67
PagI	TCATGA	1 cut(s)	700
PcsI	WCGNNNNNNNCGW	1 cut(s)	470
PctI	GAATGC	1 cut(s)	845
PfeI	GAWTC	2 cut(s)	745, 752
PkrI	GCNGC	9 cut(s)	73, 119, 194, 197, 200, 245, 583, 649, 808
PleI	GAGTC	2 cut(s)	202, 359
PluTI	GGCGCC	1 cut(s)	576
PmaCI	CACGTG	1 cut(s)	678
PmlI	CACGTG	1 cut(s)	678
PpsI	GAGTC	2 cut(s)	202, 359
Ppu21I	YACGTR	1 cut(s)	678
PshAI	GACNNNNGTC	1 cut(s)	828
Psp1406I	AACGTT	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	496
PspCI	CACGTG	1 cut(s)	678
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	4 cut(s)	220, 221, 551, 574
PspOMI	GGGCCC	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	219, 220
PvuII	CAGCTG	2 cut(s)	764, 809
RsaI	GTAC	3 cut(s)	13, 527, 569
RsaNI	GTAC	3 cut(s)	12, 526, 568
SaqAI	TTAA	1 cut(s)	834
SatI	GCNGC	9 cut(s)	72, 118, 193, 196, 199, 244, 582, 648, 807
Sau3AI	GATC	2 cut(s)	697, 811
Sau96I	GGNCC	2 cut(s)	219, 220
ScaI	AGTACT	1 cut(s)	13
SchI	GAGTC	2 cut(s)	202, 359
ScrFI	CCNGG	3 cut(s)	498, 661, 735
SduI	GDGCHC	1 cut(s)	223
SfoI	GGCGCC	1 cut(s)	574
SpeI	ACTAGT	1 cut(s)	8
SphI	GCATGC	1 cut(s)	67
Sse9I	AATT	1 cut(s)	835
SspDI	GGCGCC	1 cut(s)	572
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	3 cut(s)	496, 659, 733
StyI	CCWWGG	2 cut(s)	511, 544
TaiI	ACGT	3 cut(s)	234, 444, 680
TaqI	TCGA	1 cut(s)	750
TasI	AATT	1 cut(s)	835
TatI	WGTACW	1 cut(s)	11
TauI	GCSGC	4 cut(s)	198, 201, 246, 584
TfiI	GAWTC	2 cut(s)	745, 752
Tru1I	TTAA	1 cut(s)	834
Tru9I	TTAA	1 cut(s)	834
TscAI	CASTG	1 cut(s)	775
TseI	GCWGC	5 cut(s)	71, 117, 192, 647, 806
TspDTI	ATGAA	3 cut(s)	53, 494, 717
TspGWI	ACGGA	1 cut(s)	745
TspRI	CASTG	1 cut(s)	775
XceI	RCATGY	1 cut(s)	67
XspI	CTAG	1 cut(s)	9
ZrmI	AGTACT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.