Rh6DG406100

dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0012880
Physical Location & Seq
Reverse (-)
59337135 .. 59339343
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG406100.1

Sequence Viewer

Length: 840 bp
ATGCCCACAACTCCTCCTGAAGTTTCCGAGATCAAACGGCCGAGACTAATCCAGAGCATGCCTGCTACTTACCCACCCCCGTCCTCGGCCGACCCGCTTCCCTGCCCGCGCTGCAACTCCACCCAGACGAAGTTCTGCTACTACAACAACTACAACCTCGCTCAGCCCCGCCACTTCTGCAAGGGCTGCCGCCGCTACTGGACTCGTGGTGGGGCCCTCCGCAACGTCCCCGTCGGCGGCGGAACTCGCAACAAGAAACTCAAACTCTCTCACCGCGCCTCCTCCTCCAACTCCTCCAGCTCGCCTTCCTCTTCGTCCCTCACCCACGAGACCACCGCACCGAACAAACCCACTTCCGACTCCTCTGTGGAAAAGCCCGATTTGCCCTCCGACCAACAACAACAACAACTTCTCAACCTGAACGACAACGTTACGAGTGAAGGAGGGTTTTCGTTTCTGACGATGATGAACGCTCAGGAACAACAACCTGCGTTTTTGTCCCTTGGTGGGTACGGGTACGGGTCGGGGTTTGCCCATGGGTTCCAGCAAGGTTACGGGTACGGCGCCAGAGCCGCAGGGGTTGATTTTCCGACGGAGATGGTCGGTGCTTTTGCTGGTGTCTATGGTGTTCCTGGGGCTGCTGCTTCTTCCGGGTTTGACATCAACACGTGGCAGATGGCGGTTGCTGATCATGAAGGTCAAGGTGGTGGATTGGTTGATTGGCCGGAGGTTCAGATTCTCGATTCCGTGCCAGCTGTCAGTGGTGGTGGTGCTGTCAAGGAAGAAAAGGTGGCAGCTGATACCTCAACCGACCCTTGTCTTAATTTCCCTGCATTCTGA

Protein Analysis

279

Amino Acids

29.65

Weight (kDa)

6.2

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 32 - 86 5.2e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012880)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47655
fragaria_vesca FvH4_2g40660
malus_domestica MD08G1040100.v1.1 MD15G1034500.v1.1
prunus_persica Prupe.1G388600_v2.0.a1 Prupe.1G388600_v2.0.a1
pyrus_communis pycom08g03230 pycom15g03180
rosa_chinensis RchiOBHm_Chr6g0300001
rosa_laevigata RLG00000011373
rosa_multiflora Rmu_sc0001370.1_g000002 Rmu_sc0011230.1_g000001
rosa_roxburghii Rroxscaffold_7G00168210
rosa_rugosa Rorug06G0293400
rosa_samantha Rh6AG405100 Rh6BG413400 Rh6CG420500 Rh6DG406100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 496
AccB1I GGYRCC 1 cut(s) 563
AccII CGCG 2 cut(s) 109, 276
AclI AACGTT 1 cut(s) 429
AcoI YGGCCR 3 cut(s) 38, 87, 722
AcuI CTGAAG 1 cut(s) 39
AcvI CACGTG 1 cut(s) 669
AcyI GRCGYC 1 cut(s) 564
AfaI GTAC 3 cut(s) 512, 518, 560
AfiI CCNNNNNNNGG 3 cut(s) 85, 236, 507
AflIII ACRYGT 1 cut(s) 666
AjnI CCWGG 1 cut(s) 631
AluBI AGCT 3 cut(s) 300, 755, 797
AluI AGCT 3 cut(s) 300, 755, 797
Alw26I GTCTC 2 cut(s) 37, 323
AoxI GGCC 4 cut(s) 38, 87, 213, 722
ApaI GGGCCC 1 cut(s) 217
ApeKI GCWGC 5 cut(s) 111, 186, 638, 641, 794
AspLEI GCGC 3 cut(s) 111, 278, 566
AspS9I GGNCC 2 cut(s) 213, 214
AsuC2I CCSGG 1 cut(s) 652
AsuHPI GGTGA 2 cut(s) 263, 313
BaeGI GKGCMC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 563
BanII GRGCYC 1 cut(s) 217
BarI GAAGNNNNNNTAC 2 cut(s) 122, 154
BauI CACGAG 2 cut(s) 204, 326
BbrPI CACGTG 1 cut(s) 669
BbvI GCAGC 5 cut(s) 98, 173, 625, 628, 806
BccI CCATC 2 cut(s) 592, 670
BceAI ACGGC 2 cut(s) 53, 577
BciT130I CCWGG 1 cut(s) 633
BclI TGATCA 1 cut(s) 688
BcnI CCSGG 1 cut(s) 652
BcoDI GTCTC 2 cut(s) 37, 323
BfoI RGCGCY 1 cut(s) 567
BfuAI ACCTGC 1 cut(s) 496
BisI GCNGC 9 cut(s) 112, 187, 190, 193, 238, 573, 639, 642, 795
BlpI GCTNAGC 1 cut(s) 162
BlsI GCNGC 9 cut(s) 113, 188, 191, 194, 239, 574, 640, 643, 796
Bme1390I CCNGG 2 cut(s) 633, 652
BmgT120I GGNCC 2 cut(s) 213, 214
BmiI GGNNCC 4 cut(s) 214, 215, 542, 565
BmrFI CCNGG 2 cut(s) 633, 652
BoxI GACNNNNGTC 1 cut(s) 816
BpmI CTGGAG 1 cut(s) 280
Bpu10I CCTNAGC 1 cut(s) 474
Bpu1102I GCTNAGC 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 652
BsaAI YACGTR 1 cut(s) 669
BsaHI GRCGYC 1 cut(s) 564
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 4 cut(s) 84, 502, 535, 632
BsaXI ACNNNNNCTCC 3 cut(s) 28, 263, 293
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 236, 507
Bse1I ACTGG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 633
BseDI CCNNGG 4 cut(s) 84, 502, 535, 632
BseLI CCNNNNNNNGG 3 cut(s) 85, 236, 507
BseMII CTCAG 2 cut(s) 176, 488
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 4 cut(s) 271, 274, 283, 352
BseSI GKGCMC 1 cut(s) 217
BseX3I CGGCCG 2 cut(s) 38, 87
BseXI GCAGC 5 cut(s) 98, 173, 625, 628, 806
Bsh1236I CGCG 2 cut(s) 109, 276
Bsh1285I CGRYCG 2 cut(s) 41, 90
BshFI GGCC 4 cut(s) 40, 89, 215, 724
BshNI GGYRCC 1 cut(s) 563
BsiEI CGRYCG 2 cut(s) 41, 90
BsiSI CCGG 2 cut(s) 651, 725
BslFI GGGAC 3 cut(s) 212, 301, 484
BslI CCNNNNNNNGG 3 cut(s) 85, 236, 507
BsmAI GTCTC 2 cut(s) 37, 323
BsmFI GGGAC 3 cut(s) 212, 301, 484
BsmI GAATGC 1 cut(s) 833
BsnI GGCC 4 cut(s) 40, 89, 215, 724
Bso31I GGTCTC 1 cut(s) 323
Bsp120I GGGCCC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 30, 688
Bsp1720I GCTNAGC 1 cut(s) 162
Bsp19I CCATGG 1 cut(s) 535
BspANI GGCC 4 cut(s) 40, 89, 215, 724
BspCNI CTCAG 2 cut(s) 175, 487
BspFNI CGCG 2 cut(s) 109, 276
BspHI TCATGA 1 cut(s) 691
BspLI GGNNCC 4 cut(s) 214, 215, 542, 565
BspMI ACCTGC 1 cut(s) 496
BspT107I GGYRCC 1 cut(s) 563
BspTNI GGTCTC 1 cut(s) 323
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 4 cut(s) 84, 502, 535, 632
BssMI GATC 2 cut(s) 30, 688
BssNI GRCGYC 1 cut(s) 564
BssSI CACGAG 2 cut(s) 204, 326
BssT1I CCWWGG 2 cut(s) 502, 535
Bst2BI CACGAG 2 cut(s) 204, 326
Bst2UI CCWGG 1 cut(s) 633
Bst6I CTCTTC 1 cut(s) 316
BstACI GRCGYC 1 cut(s) 564
BstAPI GCANNNNNTGC 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 669
BstC8I GCNNGC 5 cut(s) 59, 63, 107, 302, 753
BstDEI CTNAG 2 cut(s) 162, 474
BstDSI CCRYGG 1 cut(s) 535
BstFNI CGCG 2 cut(s) 109, 276
BstH2I RGCGCY 1 cut(s) 567
BstHHI GCGC 3 cut(s) 111, 278, 566
BstKTI GATC 2 cut(s) 33, 691
BstMAI GTCTC 2 cut(s) 37, 323
BstMBI GATC 2 cut(s) 30, 688
BstMCI CGRYCG 2 cut(s) 41, 90
BstMWI GCNNNNNNNGC 7 cut(s) 111, 177, 186, 192, 246, 382, 572
BstNI CCWGG 1 cut(s) 633
BstNSI RCATGY 1 cut(s) 61
BstPAI GACNNNNGTC 1 cut(s) 816
BstSCI CCNGG 2 cut(s) 631, 650
BstSLI GKGCMC 1 cut(s) 217
BstUI CGCG 2 cut(s) 109, 276
BstV1I GCAGC 5 cut(s) 98, 173, 625, 628, 806
BstZI CGGCCG 2 cut(s) 38, 87
BsuRI GGCC 4 cut(s) 40, 89, 215, 724
BtgI CCRYGG 1 cut(s) 535
BtsIMutI CAGTG 1 cut(s) 766
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 5 cut(s) 59, 63, 107, 302, 753
CciI TCATGA 1 cut(s) 691
CfoI GCGC 3 cut(s) 111, 278, 566
Cfr13I GGNCC 2 cut(s) 213, 214
Csp6I GTAC 3 cut(s) 511, 517, 559
CviAII CATG 3 cut(s) 58, 536, 692
CviQI GTAC 3 cut(s) 511, 517, 559
DdeI CTNAG 2 cut(s) 162, 474
DinI GGCGCC 1 cut(s) 565
DpnI GATC 2 cut(s) 32, 690
DpnII GATC 2 cut(s) 30, 688
EaeI YGGCCR 3 cut(s) 38, 87, 722
EagI CGGCCG 2 cut(s) 38, 87
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
EciI GGCGGA 1 cut(s) 255
EclXI CGGCCG 2 cut(s) 38, 87
Eco130I CCWWGG 2 cut(s) 502, 535
Eco24I GRGCYC 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 323
Eco52I CGGCCG 2 cut(s) 38, 87
Eco57I CTGAAG 1 cut(s) 39
Eco72I CACGTG 1 cut(s) 669
EcoO109I RGGNCCY 2 cut(s) 213, 214
EcoRII CCWGG 1 cut(s) 631
EcoT14I CCWWGG 2 cut(s) 502, 535
EcoT38I GRGCYC 1 cut(s) 217
EgeI GGCGCC 1 cut(s) 565
EheI GGCGCC 1 cut(s) 565
ErhI CCWWGG 2 cut(s) 502, 535
FaeI CATG 3 cut(s) 61, 539, 695
FaiI YATR 4 cut(s) 59, 537, 624, 693
FaqI GGGAC 3 cut(s) 212, 301, 484
FatI CATG 3 cut(s) 57, 535, 691
FauI CCCGC 3 cut(s) 102, 114, 176
FbaI TGATCA 1 cut(s) 688
Fnu4HI GCNGC 9 cut(s) 112, 187, 190, 193, 238, 573, 639, 642, 795
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 9 cut(s) 112, 187, 190, 193, 238, 573, 639, 642, 795
GlaI GCGC 3 cut(s) 110, 277, 565
GluI GCNGC 9 cut(s) 112, 187, 190, 193, 238, 573, 639, 642, 795
GsuI CTGGAG 1 cut(s) 280
HaeII RGCGCY 1 cut(s) 567
HaeIII GGCC 4 cut(s) 40, 89, 215, 724
HapII CCGG 2 cut(s) 651, 725
HhaI GCGC 3 cut(s) 111, 278, 566
Hin1I GRCGYC 1 cut(s) 564
Hin1II CATG 3 cut(s) 61, 539, 695
Hin6I GCGC 3 cut(s) 109, 276, 564
HinP1I GCGC 3 cut(s) 109, 276, 564
HinfI GANTC 4 cut(s) 202, 359, 736, 743
HpaII CCGG 2 cut(s) 651, 725
HphI GGTGA 2 cut(s) 263, 313
Hpy188I TCNGA 7 cut(s) 28, 358, 391, 459, 591, 735, 839
Hpy188III TCNNGA 5 cut(s) 17, 52, 476, 692, 740
Hpy99I CGWCG 2 cut(s) 236, 595
HpyAV CCTTC 3 cut(s) 315, 434, 689
HpyCH4IV ACGT 3 cut(s) 225, 429, 668
HpyCH4V TGCA 3 cut(s) 114, 180, 833
HpyF10VI GCNNNNNNNGC 7 cut(s) 111, 177, 186, 192, 246, 382, 572
HpyF3I CTNAG 2 cut(s) 162, 474
HpySE526I ACGT 3 cut(s) 225, 429, 668
Hsp92I GRCGYC 1 cut(s) 564
Hsp92II CATG 3 cut(s) 61, 539, 695
HspAI GCGC 3 cut(s) 109, 276, 564
KasI GGCGCC 1 cut(s) 563
Ksp22I TGATCA 1 cut(s) 688
Kzo9I GATC 2 cut(s) 30, 688
Lsp1109I GCAGC 5 cut(s) 98, 173, 625, 628, 806
MaeII ACGT 3 cut(s) 225, 429, 668
MaeIII GTNAC 2 cut(s) 430, 551
MalI GATC 2 cut(s) 32, 690
MboI GATC 2 cut(s) 30, 688
MboII GAAGA 3 cut(s) 303, 639, 794
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 823
Mly113I GGCGCC 1 cut(s) 564
MlyI GAGTC 2 cut(s) 196, 353
MmeI TCCRAC 4 cut(s) 312, 381, 414, 614
MseI TTAA 1 cut(s) 822
MspA1I CMGCKG 2 cut(s) 755, 797
MspI CCGG 2 cut(s) 651, 725
MspR9I CCNGG 2 cut(s) 633, 652
Mva1269I GAATGC 1 cut(s) 833
MvaI CCWGG 1 cut(s) 633
MvnI CGCG 2 cut(s) 109, 276
MwoI GCNNNNNNNGC 7 cut(s) 111, 177, 186, 192, 246, 382, 572
NarI GGCGCC 1 cut(s) 564
NciI CCSGG 1 cut(s) 652
NcoI CCATGG 1 cut(s) 535
NdeII GATC 2 cut(s) 30, 688
NlaIII CATG 3 cut(s) 61, 539, 695
NlaIV GGNNCC 4 cut(s) 214, 215, 542, 565
NmeAIII GCCGAG 2 cut(s) 65, 66
NspI RCATGY 1 cut(s) 61
PaeI GCATGC 1 cut(s) 61
PagI TCATGA 1 cut(s) 691
PcsI WCGNNNNNNNCGW 1 cut(s) 458
PctI GAATGC 1 cut(s) 833
PfeI GAWTC 2 cut(s) 736, 743
PkrI GCNGC 9 cut(s) 113, 188, 191, 194, 239, 574, 640, 643, 796
PleI GAGTC 2 cut(s) 196, 353
PluTI GGCGCC 1 cut(s) 567
PmaCI CACGTG 1 cut(s) 669
PmlI CACGTG 1 cut(s) 669
PpsI GAGTC 2 cut(s) 196, 353
Ppu21I YACGTR 1 cut(s) 669
PshAI GACNNNNGTC 1 cut(s) 816
Psp1406I AACGTT 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 631
PspCI CACGTG 1 cut(s) 669
PspGI CCWGG 1 cut(s) 631
PspN4I GGNNCC 4 cut(s) 214, 215, 542, 565
PspOMI GGGCCC 1 cut(s) 213
PspPI GGNCC 2 cut(s) 213, 214
PvuII CAGCTG 2 cut(s) 755, 797
RsaI GTAC 3 cut(s) 512, 518, 560
RsaNI GTAC 3 cut(s) 511, 517, 559
SaqAI TTAA 1 cut(s) 822
SatI GCNGC 9 cut(s) 112, 187, 190, 193, 238, 573, 639, 642, 795
Sau3AI GATC 2 cut(s) 30, 688
Sau96I GGNCC 2 cut(s) 213, 214
SchI GAGTC 2 cut(s) 196, 353
ScrFI CCNGG 2 cut(s) 633, 652
SduI GDGCHC 1 cut(s) 217
SfoI GGCGCC 1 cut(s) 565
SphI GCATGC 1 cut(s) 61
Sse9I AATT 1 cut(s) 823
SspDI GGCGCC 1 cut(s) 563
StyD4I CCNGG 2 cut(s) 631, 650
StyI CCWWGG 2 cut(s) 502, 535
TaiI ACGT 3 cut(s) 228, 432, 671
TaqI TCGA 1 cut(s) 741
TasI AATT 1 cut(s) 823
TauI GCSGC 4 cut(s) 192, 195, 240, 575
TfiI GAWTC 2 cut(s) 736, 743
Tru1I TTAA 1 cut(s) 822
Tru9I TTAA 1 cut(s) 822
TscAI CASTG 1 cut(s) 766
TseI GCWGC 5 cut(s) 111, 186, 638, 641, 794
TspDTI ATGAA 2 cut(s) 482, 708
TspGWI ACGGA 2 cut(s) 608, 736
TspRI CASTG 1 cut(s) 766
XceI RCATGY 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.