Rh6AG405100

dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0012880
Physical Location & Seq
Reverse (-)
60175959 .. 60178863
2905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG405100.1

Sequence Viewer

Length: 843 bp
ATGCCCACTAGTACTACTCCTCCTGAAGTTTCCGAGATGAAACGGCCGAGACTAATCCAGAGCATGCCTGCTGCTTACCCACCGCCATCCTCTACCGACCCGCTTCCCTGCCCGCGCTGTAACTCCACCCAGACGAAGTTCTGCTACTACAACAACTACAACCTCGCTCAGCCCCGCCACTTCTGCAAGGGCTGCCGCCGCTACTGGACTCGTGGTGGGGCCCTCCGCAACGTCCCCGTCGGCGGCGGAACTCGCAACAAGAAACCCAAACTCTCTCACCGCGCCTCCTCCTCCAACTCCTCCAGCTCGCCTTCCTCTTCGTCCCTCACCCACGAGACCACCGCACCGAACAAACCCACTTCCGACTCCGCTGTGGAAAAGCCCGATTTGCCCTCCGACCAACAACAACAACAACAACTTCTCAACCTGAACGGCAACGTTACGAGTGAAGGAGGGTTTTCGTTTCTGACGATGATGAACGCTCAGGAACAACCTGGGTTTTTGTCCCTTGGTGGGTATGGGTACGGGTCGGGGTTTGCCCATGGGTTCCAGCAAGGTTACGGGTACGGCGCCAGAGCCGCAGGGGTTGATTTTCCGACGGAGATGGTCGGTGCCCTTGCTGGTGTCTATGGTGTTCCTGGGGCTGCTACTTCTTCCGGGTTTGACATCAACACGTGGCAGATGGCGGTTGCTGATCATGAAGGTCAAGGTGGTGGATTGGTTGATTGGCCGGAGGTTCCGATTCTCGATTCCGTGCCAGCTGTCAGTGGTGGTGGTGTCAAGGAAGAAAAGGTGGCAGCTGATACCTCAACTGACCCTTGTCTTAATTTCCCTGCATTCTGA

Protein Analysis

280

Amino Acids

29.65

Weight (kDa)

6.51

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 34 - 88 1.1e-31 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012880)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47655
fragaria_vesca FvH4_2g40660
malus_domestica MD08G1040100.v1.1 MD15G1034500.v1.1
prunus_persica Prupe.1G388600_v2.0.a1 Prupe.1G388600_v2.0.a1
pyrus_communis pycom08g03230 pycom15g03180
rosa_chinensis RchiOBHm_Chr6g0300001
rosa_laevigata RLG00000011373
rosa_multiflora Rmu_sc0001370.1_g000002 Rmu_sc0011230.1_g000001
rosa_roxburghii Rroxscaffold_7G00168210
rosa_rugosa Rorug06G0293400
rosa_samantha Rh6AG405100 Rh6BG413400 Rh6CG420500 Rh6DG406100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 569, 611
AccII CGCG 2 cut(s) 115, 282
AclI AACGTT 1 cut(s) 438
AcoI YGGCCR 2 cut(s) 44, 728
AcuI CTGAAG 1 cut(s) 45
AcvI CACGTG 1 cut(s) 675
AcyI GRCGYC 1 cut(s) 570
AfaI GTAC 3 cut(s) 13, 524, 566
AfiI CCNNNNNNNGG 2 cut(s) 242, 513
AflIII ACRYGT 1 cut(s) 672
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 2 cut(s) 493, 637
AluBI AGCT 3 cut(s) 306, 761, 800
AluI AGCT 3 cut(s) 306, 761, 800
Alw26I GTCTC 2 cut(s) 43, 329
AoxI GGCC 3 cut(s) 44, 219, 728
ApaI GGGCCC 1 cut(s) 223
ApeKI GCWGC 4 cut(s) 71, 192, 644, 797
AspLEI GCGC 3 cut(s) 117, 284, 572
AspS9I GGNCC 2 cut(s) 219, 220
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 2 cut(s) 269, 319
BaeGI GKGCMC 2 cut(s) 223, 616
BanI GGYRCC 2 cut(s) 569, 611
BanII GRGCYC 1 cut(s) 223
BarI GAAGNNNNNNTAC 2 cut(s) 128, 160
BauI CACGAG 2 cut(s) 210, 332
BbrPI CACGTG 1 cut(s) 675
BbvI GCAGC 4 cut(s) 58, 179, 631, 809
BccI CCATC 3 cut(s) 94, 598, 676
BceAI ACGGC 3 cut(s) 59, 448, 583
BciT130I CCWGG 2 cut(s) 495, 639
BclI TGATCA 1 cut(s) 694
BcnI CCSGG 1 cut(s) 658
BcoDI GTCTC 2 cut(s) 43, 329
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 573
BisI GCNGC 8 cut(s) 72, 193, 196, 199, 244, 579, 645, 798
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 8 cut(s) 73, 194, 197, 200, 245, 580, 646, 799
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 3 cut(s) 495, 639, 658
BmgT120I GGNCC 2 cut(s) 219, 220
BmiI GGNNCC 6 cut(s) 220, 221, 548, 571, 613, 738
BmrFI CCNGG 3 cut(s) 495, 639, 658
BoxI GACNNNNGTC 1 cut(s) 819
BpmI CTGGAG 1 cut(s) 286
Bpu10I CCTNAGC 1 cut(s) 483
Bpu1102I GCTNAGC 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 658
BsaAI YACGTR 1 cut(s) 675
BsaHI GRCGYC 1 cut(s) 570
BsaI GGTCTC 1 cut(s) 329
BsaJI CCNNGG 4 cut(s) 494, 508, 541, 638
BsaXI ACNNNNNCTCC 3 cut(s) 34, 269, 299
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 513
Bse1I ACTGG 1 cut(s) 209
BseBI CCWGG 2 cut(s) 495, 639
BseDI CCNNGG 4 cut(s) 494, 508, 541, 638
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 2 cut(s) 242, 513
BseMII CTCAG 2 cut(s) 182, 497
BseNI ACTGG 1 cut(s) 209
BseRI GAGGAG 4 cut(s) 9, 277, 280, 289
BseSI GKGCMC 2 cut(s) 223, 616
BseX3I CGGCCG 1 cut(s) 44
BseXI GCAGC 4 cut(s) 58, 179, 631, 809
Bsh1236I CGCG 2 cut(s) 115, 282
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 3 cut(s) 46, 221, 730
BshNI GGYRCC 2 cut(s) 569, 611
BsiEI CGRYCG 1 cut(s) 47
BsiSI CCGG 2 cut(s) 657, 731
BslFI GGGAC 3 cut(s) 218, 307, 490
BslI CCNNNNNNNGG 2 cut(s) 242, 513
BsmAI GTCTC 2 cut(s) 43, 329
BsmFI GGGAC 3 cut(s) 218, 307, 490
BsmI GAATGC 1 cut(s) 836
BsnI GGCC 3 cut(s) 46, 221, 730
Bso31I GGTCTC 1 cut(s) 329
Bsp120I GGGCCC 1 cut(s) 219
Bsp1286I GDGCHC 2 cut(s) 223, 616
Bsp143I GATC 1 cut(s) 694
Bsp1720I GCTNAGC 1 cut(s) 168
Bsp19I CCATGG 1 cut(s) 541
BspANI GGCC 3 cut(s) 46, 221, 730
BspCNI CTCAG 2 cut(s) 181, 496
BspFNI CGCG 2 cut(s) 115, 282
BspHI TCATGA 1 cut(s) 697
BspLI GGNNCC 6 cut(s) 220, 221, 548, 571, 613, 738
BspT107I GGYRCC 2 cut(s) 569, 611
BspTNI GGTCTC 1 cut(s) 329
BsrI ACTGG 1 cut(s) 209
BssECI CCNNGG 4 cut(s) 494, 508, 541, 638
BssMI GATC 1 cut(s) 694
BssNI GRCGYC 1 cut(s) 570
BssSI CACGAG 2 cut(s) 210, 332
BssT1I CCWWGG 2 cut(s) 508, 541
Bst2BI CACGAG 2 cut(s) 210, 332
Bst2UI CCWGG 2 cut(s) 495, 639
Bst6I CTCTTC 1 cut(s) 322
BstACI GRCGYC 1 cut(s) 570
BstAPI GCANNNNNTGC 1 cut(s) 192
BstBAI YACGTR 1 cut(s) 675
BstC8I GCNNGC 5 cut(s) 65, 69, 113, 308, 759
BstDEI CTNAG 2 cut(s) 168, 483
BstDSI CCRYGG 1 cut(s) 541
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 2 cut(s) 115, 282
BstH2I RGCGCY 1 cut(s) 573
BstHHI GCGC 3 cut(s) 117, 284, 572
BstKTI GATC 1 cut(s) 697
BstMAI GTCTC 2 cut(s) 43, 329
BstMBI GATC 1 cut(s) 694
BstMCI CGRYCG 1 cut(s) 47
BstMWI GCNNNNNNNGC 6 cut(s) 183, 192, 198, 252, 388, 578
BstNI CCWGG 2 cut(s) 495, 639
BstNSI RCATGY 1 cut(s) 67
BstPAI GACNNNNGTC 1 cut(s) 819
BstSCI CCNGG 3 cut(s) 493, 637, 656
BstSLI GKGCMC 2 cut(s) 223, 616
BstUI CGCG 2 cut(s) 115, 282
BstV1I GCAGC 4 cut(s) 58, 179, 631, 809
BstZI CGGCCG 1 cut(s) 44
BsuRI GGCC 3 cut(s) 46, 221, 730
BtgI CCRYGG 1 cut(s) 541
BtsCI GGATG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 772
Cac8I GCNNGC 5 cut(s) 65, 69, 113, 308, 759
CciI TCATGA 1 cut(s) 697
CfoI GCGC 3 cut(s) 117, 284, 572
Cfr13I GGNCC 2 cut(s) 219, 220
Csp6I GTAC 3 cut(s) 12, 523, 565
CviAII CATG 3 cut(s) 64, 542, 698
CviQI GTAC 3 cut(s) 12, 523, 565
DdeI CTNAG 2 cut(s) 168, 483
DinI GGCGCC 1 cut(s) 571
DpnI GATC 1 cut(s) 696
DpnII GATC 1 cut(s) 694
EaeI YGGCCR 2 cut(s) 44, 728
EagI CGGCCG 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 322
EciI GGCGGA 1 cut(s) 261
EclXI CGGCCG 1 cut(s) 44
Eco130I CCWWGG 2 cut(s) 508, 541
Eco24I GRGCYC 1 cut(s) 223
Eco31I GGTCTC 1 cut(s) 329
Eco52I CGGCCG 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 45
Eco72I CACGTG 1 cut(s) 675
EcoO109I RGGNCCY 2 cut(s) 219, 220
EcoRII CCWGG 2 cut(s) 493, 637
EcoT14I CCWWGG 2 cut(s) 508, 541
EcoT38I GRGCYC 1 cut(s) 223
EgeI GGCGCC 1 cut(s) 571
EheI GGCGCC 1 cut(s) 571
ErhI CCWWGG 2 cut(s) 508, 541
FaeI CATG 3 cut(s) 67, 545, 701
FaiI YATR 5 cut(s) 65, 519, 543, 630, 699
FaqI GGGAC 3 cut(s) 218, 307, 490
FatI CATG 3 cut(s) 63, 541, 697
FauI CCCGC 3 cut(s) 108, 120, 182
FbaI TGATCA 1 cut(s) 694
Fnu4HI GCNGC 8 cut(s) 72, 193, 196, 199, 244, 579, 645, 798
FokI GGATG 1 cut(s) 73
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 8 cut(s) 72, 193, 196, 199, 244, 579, 645, 798
FspBI CTAG 1 cut(s) 9
GlaI GCGC 3 cut(s) 116, 283, 571
GluI GCNGC 8 cut(s) 72, 193, 196, 199, 244, 579, 645, 798
GsuI CTGGAG 1 cut(s) 286
HaeII RGCGCY 1 cut(s) 573
HaeIII GGCC 3 cut(s) 46, 221, 730
HapII CCGG 2 cut(s) 657, 731
HhaI GCGC 3 cut(s) 117, 284, 572
Hin1I GRCGYC 1 cut(s) 570
Hin1II CATG 3 cut(s) 67, 545, 701
Hin6I GCGC 3 cut(s) 115, 282, 570
HinP1I GCGC 3 cut(s) 115, 282, 570
HinfI GANTC 4 cut(s) 208, 365, 742, 749
HpaII CCGG 2 cut(s) 657, 731
HphI GGTGA 2 cut(s) 269, 319
Hpy188I TCNGA 7 cut(s) 34, 364, 397, 468, 597, 741, 842
Hpy188III TCNNGA 5 cut(s) 23, 58, 485, 698, 746
Hpy99I CGWCG 2 cut(s) 242, 601
HpyAV CCTTC 3 cut(s) 321, 443, 695
HpyCH4IV ACGT 3 cut(s) 231, 438, 674
HpyCH4V TGCA 2 cut(s) 186, 836
HpyF10VI GCNNNNNNNGC 6 cut(s) 183, 192, 198, 252, 388, 578
HpyF3I CTNAG 2 cut(s) 168, 483
HpySE526I ACGT 3 cut(s) 231, 438, 674
Hsp92I GRCGYC 1 cut(s) 570
Hsp92II CATG 3 cut(s) 67, 545, 701
HspAI GCGC 3 cut(s) 115, 282, 570
KasI GGCGCC 1 cut(s) 569
Ksp22I TGATCA 1 cut(s) 694
Kzo9I GATC 1 cut(s) 694
Lsp1109I GCAGC 4 cut(s) 58, 179, 631, 809
MaeI CTAG 1 cut(s) 9
MaeII ACGT 3 cut(s) 231, 438, 674
MaeIII GTNAC 3 cut(s) 119, 439, 557
MalI GATC 1 cut(s) 696
MboI GATC 1 cut(s) 694
MboII GAAGA 3 cut(s) 309, 645, 797
MhlI GDGCHC 2 cut(s) 223, 616
MluCI AATT 1 cut(s) 826
Mly113I GGCGCC 1 cut(s) 570
MlyI GAGTC 2 cut(s) 202, 359
MmeI TCCRAC 4 cut(s) 318, 387, 420, 620
MseI TTAA 1 cut(s) 825
MspA1I CMGCKG 3 cut(s) 371, 761, 800
MspI CCGG 2 cut(s) 657, 731
MspR9I CCNGG 3 cut(s) 495, 639, 658
Mva1269I GAATGC 1 cut(s) 836
MvaI CCWGG 2 cut(s) 495, 639
MvnI CGCG 2 cut(s) 115, 282
MwoI GCNNNNNNNGC 6 cut(s) 183, 192, 198, 252, 388, 578
NarI GGCGCC 1 cut(s) 570
NciI CCSGG 1 cut(s) 658
NcoI CCATGG 1 cut(s) 541
NdeII GATC 1 cut(s) 694
NlaIII CATG 3 cut(s) 67, 545, 701
NlaIV GGNNCC 6 cut(s) 220, 221, 548, 571, 613, 738
NmeAIII GCCGAG 1 cut(s) 72
NspI RCATGY 1 cut(s) 67
PaeI GCATGC 1 cut(s) 67
PagI TCATGA 1 cut(s) 697
PcsI WCGNNNNNNNCGW 1 cut(s) 467
PctI GAATGC 1 cut(s) 836
PfeI GAWTC 2 cut(s) 742, 749
PkrI GCNGC 8 cut(s) 73, 194, 197, 200, 245, 580, 646, 799
PleI GAGTC 2 cut(s) 202, 359
PluTI GGCGCC 1 cut(s) 573
PmaCI CACGTG 1 cut(s) 675
PmlI CACGTG 1 cut(s) 675
PpsI GAGTC 2 cut(s) 202, 359
Ppu21I YACGTR 1 cut(s) 675
PshAI GACNNNNGTC 1 cut(s) 819
Psp1406I AACGTT 1 cut(s) 438
Psp6I CCWGG 2 cut(s) 493, 637
PspCI CACGTG 1 cut(s) 675
PspGI CCWGG 2 cut(s) 493, 637
PspN4I GGNNCC 6 cut(s) 220, 221, 548, 571, 613, 738
PspOMI GGGCCC 1 cut(s) 219
PspPI GGNCC 2 cut(s) 219, 220
PvuII CAGCTG 2 cut(s) 761, 800
RsaI GTAC 3 cut(s) 13, 524, 566
RsaNI GTAC 3 cut(s) 12, 523, 565
SaqAI TTAA 1 cut(s) 825
SatI GCNGC 8 cut(s) 72, 193, 196, 199, 244, 579, 645, 798
Sau3AI GATC 1 cut(s) 694
Sau96I GGNCC 2 cut(s) 219, 220
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 2 cut(s) 202, 359
ScrFI CCNGG 3 cut(s) 495, 639, 658
SduI GDGCHC 2 cut(s) 223, 616
SfoI GGCGCC 1 cut(s) 571
SpeI ACTAGT 1 cut(s) 8
SphI GCATGC 1 cut(s) 67
Sse9I AATT 1 cut(s) 826
SspDI GGCGCC 1 cut(s) 569
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 3 cut(s) 493, 637, 656
StyI CCWWGG 2 cut(s) 508, 541
TaiI ACGT 3 cut(s) 234, 441, 677
TaqI TCGA 1 cut(s) 747
TasI AATT 1 cut(s) 826
TatI WGTACW 1 cut(s) 11
TauI GCSGC 4 cut(s) 198, 201, 246, 581
TfiI GAWTC 2 cut(s) 742, 749
Tru1I TTAA 1 cut(s) 825
Tru9I TTAA 1 cut(s) 825
TscAI CASTG 1 cut(s) 772
TseI GCWGC 4 cut(s) 71, 192, 644, 797
TspDTI ATGAA 3 cut(s) 53, 491, 714
TspGWI ACGGA 2 cut(s) 614, 742
TspRI CASTG 1 cut(s) 772
XceI RCATGY 1 cut(s) 67
XspI CTAG 1 cut(s) 9
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.