RLG00000011373

dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012880
Physical Location & Seq
Forward (+)
8968472 .. 8969305
834 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011373

Sequence Viewer

Length: 834 bp
ATGCCCACTACTCCTCCTGAAGTTTCCGAGATCAAACGGCCGAGACTAATCCAGAGCATGCCTGCTGCTTACCCACCCCCGTCCTCGGCCGACCCGCTTCCCTGCCCGCGCTGCAACTCCACCCAGACGAAGTTCTGCTACTACAACAACTACAACCTCTCTCAGCCCCGCCACTTCTGCAAGGGCTGCCGCCGCTACTGGACTCGTGGTGGGGCCCTCCGCAACGTCCCCGTCGGCGGCGGAACTCGCAACAAGAAACCCAAACTCTCTCACCGCGCCTCCTCCTCCAACTCCTCCAGCTCGCCTTCCTCTTCGTCCCTCACCCACGAGACCACCGCACCGAACAAACTCACTTCCGACTCTGCTGTGGAAAAGCCCGATTTGCCCTCCGACCAACAACAACAACAACTTCTCAACCTGAACGACAACGTTACAAGTGAAGGAGGGTTTTCGTTTCTGACGATGATGAACGCTCAGGAACAACCTGGGTTTTTGTCCCTCGGTGGGTACGGGTACGGGTCGGGGTTTGCCCATGGGTTCCAGCAAGGTTACGGGTACGGCGCCAGAGCCGCAGGGGTTGATTTTCCGACGGAGATGGTCGGTGCTTTTGCTGGTGTCTATGGTGTTCCTGGGGCTGCTGGTTCTTCCGGGTTTGACATCAACACGTGGCAGATGGCGGTTGCTGATCATGAAGATCAAGGTGGTGGATTGGTTGATTGGCCGGAGGTTCAAATTCTCGATTCCGTGCCAGCTGTCAGTGGTGGTGGTGTCAAGGAAGAAAAGGTGGCAGCTGATACCTCAACTAACCCTTGTCTTAATTTCCCTGCATTCTGA

Protein Analysis

278

Amino Acids

29.45

Weight (kDa)

6.2

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 32 - 86 4.8e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012880)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47655
fragaria_vesca FvH4_2g40660
malus_domestica MD08G1040100.v1.1 MD15G1034500.v1.1
prunus_persica Prupe.1G388600_v2.0.a1 Prupe.1G388600_v2.0.a1
pyrus_communis pycom08g03230 pycom15g03180
rosa_chinensis RchiOBHm_Chr6g0300001
rosa_laevigata RLG00000011373
rosa_multiflora Rmu_sc0001370.1_g000002 Rmu_sc0011230.1_g000001
rosa_roxburghii Rroxscaffold_7G00168210
rosa_rugosa Rorug06G0293400
rosa_samantha Rh6AG405100 Rh6BG413400 Rh6CG420500 Rh6DG406100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 560
AccII CGCG 2 cut(s) 109, 276
AclI AACGTT 1 cut(s) 429
AcoI YGGCCR 3 cut(s) 38, 87, 719
AcsI RAATTY 1 cut(s) 732
AcuI CTGAAG 1 cut(s) 39
AcvI CACGTG 1 cut(s) 666
AcyI GRCGYC 1 cut(s) 561
AfaI GTAC 3 cut(s) 509, 515, 557
AfiI CCNNNNNNNGG 3 cut(s) 85, 236, 504
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 1 cut(s) 731
AjnI CCWGG 2 cut(s) 484, 628
AluBI AGCT 3 cut(s) 300, 752, 791
AluI AGCT 3 cut(s) 300, 752, 791
Alw26I GTCTC 2 cut(s) 37, 323
AoxI GGCC 4 cut(s) 38, 87, 213, 719
ApaI GGGCCC 1 cut(s) 217
ApeKI GCWGC 5 cut(s) 65, 111, 186, 635, 788
ApoI RAATTY 1 cut(s) 732
AspLEI GCGC 3 cut(s) 111, 278, 563
AspS9I GGNCC 2 cut(s) 213, 214
AsuC2I CCSGG 1 cut(s) 649
AsuHPI GGTGA 2 cut(s) 263, 313
BaeGI GKGCMC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 560
BanII GRGCYC 1 cut(s) 217
BarI GAAGNNNNNNTAC 2 cut(s) 122, 154
BauI CACGAG 2 cut(s) 204, 326
BbrPI CACGTG 1 cut(s) 666
BbvI GCAGC 5 cut(s) 52, 98, 173, 622, 800
BccI CCATC 2 cut(s) 589, 667
BceAI ACGGC 2 cut(s) 53, 574
BciT130I CCWGG 2 cut(s) 486, 630
BclI TGATCA 1 cut(s) 685
BcnI CCSGG 1 cut(s) 649
BcoDI GTCTC 2 cut(s) 37, 323
BfoI RGCGCY 1 cut(s) 564
BisI GCNGC 9 cut(s) 66, 112, 187, 190, 193, 238, 570, 636, 789
BlsI GCNGC 9 cut(s) 67, 113, 188, 191, 194, 239, 571, 637, 790
Bme1390I CCNGG 3 cut(s) 486, 630, 649
BmgT120I GGNCC 2 cut(s) 213, 214
BmiI GGNNCC 4 cut(s) 214, 215, 539, 562
BmrFI CCNGG 3 cut(s) 486, 630, 649
BpmI CTGGAG 1 cut(s) 280
Bpu10I CCTNAGC 1 cut(s) 474
BpuMI CCSGG 1 cut(s) 649
BsaAI YACGTR 1 cut(s) 666
BsaHI GRCGYC 1 cut(s) 561
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 5 cut(s) 84, 485, 499, 532, 629
BsaXI ACNNNNNCTCC 3 cut(s) 28, 263, 293
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 236, 504
Bse1I ACTGG 1 cut(s) 203
BseBI CCWGG 2 cut(s) 486, 630
BseDI CCNNGG 5 cut(s) 84, 485, 499, 532, 629
BseLI CCNNNNNNNGG 3 cut(s) 85, 236, 504
BseMII CTCAG 2 cut(s) 176, 488
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 3 cut(s) 271, 274, 283
BseSI GKGCMC 1 cut(s) 217
BseX3I CGGCCG 2 cut(s) 38, 87
BseXI GCAGC 5 cut(s) 52, 98, 173, 622, 800
Bsh1236I CGCG 2 cut(s) 109, 276
Bsh1285I CGRYCG 2 cut(s) 41, 90
BshFI GGCC 4 cut(s) 40, 89, 215, 721
BshNI GGYRCC 1 cut(s) 560
BsiEI CGRYCG 2 cut(s) 41, 90
BsiSI CCGG 2 cut(s) 648, 722
BslFI GGGAC 3 cut(s) 212, 301, 481
BslI CCNNNNNNNGG 3 cut(s) 85, 236, 504
BsmAI GTCTC 2 cut(s) 37, 323
BsmFI GGGAC 3 cut(s) 212, 301, 481
BsmI GAATGC 1 cut(s) 827
BsnI GGCC 4 cut(s) 40, 89, 215, 721
Bso31I GGTCTC 1 cut(s) 323
Bsp120I GGGCCC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 3 cut(s) 30, 685, 694
Bsp19I CCATGG 1 cut(s) 532
BspANI GGCC 4 cut(s) 40, 89, 215, 721
BspCNI CTCAG 2 cut(s) 175, 487
BspFNI CGCG 2 cut(s) 109, 276
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 4 cut(s) 214, 215, 539, 562
BspT107I GGYRCC 1 cut(s) 560
BspTNI GGTCTC 1 cut(s) 323
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 5 cut(s) 84, 485, 499, 532, 629
BssMI GATC 3 cut(s) 30, 685, 694
BssNI GRCGYC 1 cut(s) 561
BssSI CACGAG 2 cut(s) 204, 326
BssT1I CCWWGG 1 cut(s) 532
Bst2BI CACGAG 2 cut(s) 204, 326
Bst2UI CCWGG 2 cut(s) 486, 630
Bst6I CTCTTC 1 cut(s) 316
BstACI GRCGYC 1 cut(s) 561
BstAPI GCANNNNNTGC 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 666
BstC8I GCNNGC 5 cut(s) 59, 63, 107, 302, 750
BstDEI CTNAG 2 cut(s) 162, 474
BstDSI CCRYGG 1 cut(s) 532
BstFNI CGCG 2 cut(s) 109, 276
BstH2I RGCGCY 1 cut(s) 564
BstHHI GCGC 3 cut(s) 111, 278, 563
BstKTI GATC 3 cut(s) 33, 688, 697
BstMAI GTCTC 2 cut(s) 37, 323
BstMBI GATC 3 cut(s) 30, 685, 694
BstMCI CGRYCG 2 cut(s) 41, 90
BstMWI GCNNNNNNNGC 7 cut(s) 111, 177, 186, 192, 246, 382, 569
BstNI CCWGG 2 cut(s) 486, 630
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 3 cut(s) 484, 628, 647
BstSLI GKGCMC 1 cut(s) 217
BstUI CGCG 2 cut(s) 109, 276
BstV1I GCAGC 5 cut(s) 52, 98, 173, 622, 800
BstZI CGGCCG 2 cut(s) 38, 87
BsuRI GGCC 4 cut(s) 40, 89, 215, 721
BtgI CCRYGG 1 cut(s) 532
BtsIMutI CAGTG 1 cut(s) 763
Cac8I GCNNGC 5 cut(s) 59, 63, 107, 302, 750
CciI TCATGA 1 cut(s) 688
CfoI GCGC 3 cut(s) 111, 278, 563
Cfr13I GGNCC 2 cut(s) 213, 214
Csp6I GTAC 3 cut(s) 508, 514, 556
CviAII CATG 3 cut(s) 58, 533, 689
CviQI GTAC 3 cut(s) 508, 514, 556
DdeI CTNAG 2 cut(s) 162, 474
DinI GGCGCC 1 cut(s) 562
DpnI GATC 3 cut(s) 32, 687, 696
DpnII GATC 3 cut(s) 30, 685, 694
EaeI YGGCCR 3 cut(s) 38, 87, 719
EagI CGGCCG 2 cut(s) 38, 87
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
EciI GGCGGA 1 cut(s) 255
EclXI CGGCCG 2 cut(s) 38, 87
Eco130I CCWWGG 1 cut(s) 532
Eco24I GRGCYC 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 323
Eco52I CGGCCG 2 cut(s) 38, 87
Eco57I CTGAAG 1 cut(s) 39
Eco72I CACGTG 1 cut(s) 666
EcoO109I RGGNCCY 2 cut(s) 213, 214
EcoRII CCWGG 2 cut(s) 484, 628
EcoT14I CCWWGG 1 cut(s) 532
EcoT38I GRGCYC 1 cut(s) 217
EgeI GGCGCC 1 cut(s) 562
EheI GGCGCC 1 cut(s) 562
ErhI CCWWGG 1 cut(s) 532
FaeI CATG 3 cut(s) 61, 536, 692
FaiI YATR 4 cut(s) 59, 534, 621, 690
FaqI GGGAC 3 cut(s) 212, 301, 481
FatI CATG 3 cut(s) 57, 532, 688
FauI CCCGC 3 cut(s) 102, 114, 176
FbaI TGATCA 1 cut(s) 685
Fnu4HI GCNGC 9 cut(s) 66, 112, 187, 190, 193, 238, 570, 636, 789
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 9 cut(s) 66, 112, 187, 190, 193, 238, 570, 636, 789
GlaI GCGC 3 cut(s) 110, 277, 562
GluI GCNGC 9 cut(s) 66, 112, 187, 190, 193, 238, 570, 636, 789
GsuI CTGGAG 1 cut(s) 280
HaeII RGCGCY 1 cut(s) 564
HaeIII GGCC 4 cut(s) 40, 89, 215, 721
HapII CCGG 2 cut(s) 648, 722
HhaI GCGC 3 cut(s) 111, 278, 563
Hin1I GRCGYC 1 cut(s) 561
Hin1II CATG 3 cut(s) 61, 536, 692
Hin6I GCGC 3 cut(s) 109, 276, 561
HinP1I GCGC 3 cut(s) 109, 276, 561
HinfI GANTC 3 cut(s) 202, 359, 740
HpaII CCGG 2 cut(s) 648, 722
HphI GGTGA 2 cut(s) 263, 313
Hpy188I TCNGA 6 cut(s) 28, 358, 391, 459, 588, 833
Hpy188III TCNNGA 5 cut(s) 17, 52, 476, 689, 737
Hpy99I CGWCG 2 cut(s) 236, 592
HpyAV CCTTC 2 cut(s) 315, 434
HpyCH4IV ACGT 3 cut(s) 225, 429, 665
HpyCH4V TGCA 3 cut(s) 114, 180, 827
HpyF10VI GCNNNNNNNGC 7 cut(s) 111, 177, 186, 192, 246, 382, 569
HpyF3I CTNAG 2 cut(s) 162, 474
HpySE526I ACGT 3 cut(s) 225, 429, 665
Hsp92I GRCGYC 1 cut(s) 561
Hsp92II CATG 3 cut(s) 61, 536, 692
HspAI GCGC 3 cut(s) 109, 276, 561
KasI GGCGCC 1 cut(s) 560
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 3 cut(s) 30, 685, 694
Lsp1109I GCAGC 5 cut(s) 52, 98, 173, 622, 800
MaeII ACGT 3 cut(s) 225, 429, 665
MaeIII GTNAC 2 cut(s) 430, 548
MalI GATC 3 cut(s) 32, 687, 696
MboI GATC 3 cut(s) 30, 685, 694
MboII GAAGA 4 cut(s) 303, 636, 704, 788
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 2 cut(s) 732, 817
Mly113I GGCGCC 1 cut(s) 561
MlyI GAGTC 2 cut(s) 196, 353
MmeI TCCRAC 4 cut(s) 312, 381, 414, 611
MseI TTAA 1 cut(s) 816
MspA1I CMGCKG 2 cut(s) 752, 791
MspI CCGG 2 cut(s) 648, 722
MspR9I CCNGG 3 cut(s) 486, 630, 649
Mva1269I GAATGC 1 cut(s) 827
MvaI CCWGG 2 cut(s) 486, 630
MvnI CGCG 2 cut(s) 109, 276
MwoI GCNNNNNNNGC 7 cut(s) 111, 177, 186, 192, 246, 382, 569
NarI GGCGCC 1 cut(s) 561
NciI CCSGG 1 cut(s) 649
NcoI CCATGG 1 cut(s) 532
NdeII GATC 3 cut(s) 30, 685, 694
NlaIII CATG 3 cut(s) 61, 536, 692
NlaIV GGNNCC 4 cut(s) 214, 215, 539, 562
NmeAIII GCCGAG 2 cut(s) 65, 66
NspI RCATGY 1 cut(s) 61
PaeI GCATGC 1 cut(s) 61
PagI TCATGA 1 cut(s) 688
PcsI WCGNNNNNNNCGW 1 cut(s) 458
PctI GAATGC 1 cut(s) 827
PfeI GAWTC 1 cut(s) 740
PkrI GCNGC 9 cut(s) 67, 113, 188, 191, 194, 239, 571, 637, 790
PleI GAGTC 2 cut(s) 196, 353
PluTI GGCGCC 1 cut(s) 564
PmaCI CACGTG 1 cut(s) 666
PmlI CACGTG 1 cut(s) 666
PpsI GAGTC 2 cut(s) 196, 353
Ppu21I YACGTR 1 cut(s) 666
Psp1406I AACGTT 1 cut(s) 429
Psp6I CCWGG 2 cut(s) 484, 628
PspCI CACGTG 1 cut(s) 666
PspGI CCWGG 2 cut(s) 484, 628
PspN4I GGNNCC 4 cut(s) 214, 215, 539, 562
PspOMI GGGCCC 1 cut(s) 213
PspPI GGNCC 2 cut(s) 213, 214
PvuII CAGCTG 2 cut(s) 752, 791
RsaI GTAC 3 cut(s) 509, 515, 557
RsaNI GTAC 3 cut(s) 508, 514, 556
SaqAI TTAA 1 cut(s) 816
SatI GCNGC 9 cut(s) 66, 112, 187, 190, 193, 238, 570, 636, 789
Sau3AI GATC 3 cut(s) 30, 685, 694
Sau96I GGNCC 2 cut(s) 213, 214
SchI GAGTC 2 cut(s) 196, 353
ScrFI CCNGG 3 cut(s) 486, 630, 649
SduI GDGCHC 1 cut(s) 217
SfoI GGCGCC 1 cut(s) 562
SphI GCATGC 1 cut(s) 61
Sse9I AATT 2 cut(s) 732, 817
SspDI GGCGCC 1 cut(s) 560
StyD4I CCNGG 3 cut(s) 484, 628, 647
StyI CCWWGG 1 cut(s) 532
TaiI ACGT 3 cut(s) 228, 432, 668
TaqI TCGA 1 cut(s) 738
TasI AATT 2 cut(s) 732, 817
TauI GCSGC 4 cut(s) 192, 195, 240, 572
TfiI GAWTC 1 cut(s) 740
Tru1I TTAA 1 cut(s) 816
Tru9I TTAA 1 cut(s) 816
TscAI CASTG 1 cut(s) 763
TseI GCWGC 5 cut(s) 65, 111, 186, 635, 788
TspDTI ATGAA 2 cut(s) 482, 705
TspGWI ACGGA 2 cut(s) 605, 733
TspRI CASTG 1 cut(s) 763
XapI RAATTY 1 cut(s) 732
XceI RCATGY 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.