Rh6BG413400

dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012880
Physical Location & Seq
Reverse (-)
63846794 .. 63849005
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG413400.1

Sequence Viewer

Length: 843 bp
ATGCCCACAACTCCTCCTGAAGTTTCCGAGATCAAACGGCCGAGACTAATCCAGAGCATGCCTGCTGCTTACCCACCCCCGTCCTCGGCCGACCCGCTTCCCTGCCCGCGCTGCAACTCCACCCAGACGAAGTTCTGCTACTACAACAACTACAACCTCGCTCAGCCCCGCCACTTCTGCAAGGGCTGCCGCCGCTACTGGACTCGTGGTGGGGCCCTCCGCAACGTCCCCGTCGGCGGCGGAACTCGCAACAAGAAACTCAAACTCTCTCACCGCGCCTCCTCCTCCAACTCCTCCAGCTCGCCTTCCTCTTCGTCCCTCACCCACGAGACCACCGCACCGAACAAACCCACTTCCGACTCCTCTGTGGAAAAGCCCGATTTGCCCTCCGACCAACAACAACAACTTCTCAACCTGAACGACAACGTTACGAGTGAAGGAGGGTTTTCGTTTCTGACGATGATGAACGCTCAGGAACAACAACCTGCGTTTTTGTCCCTTGGTGGGTACGGGTACGGGTACGGGTCGGGGTTTGCCCATGGGTTCCAGCAAGGTTACGGGTACGGCGCCAGAGCCGCAGGGGTTGATTTTCCGACGGAGATGGTCGGTGCTTTTGCTGGTGTCTATGGTGTTCCTGGGGCTGCTGCTTCTTCCGGGTTTGACATCAACACGTGGCAGATGGCGGTTGCTGATCATGAAGGTCAAGGTGGTGGATTGGTTGATTGGCCGGAGGTTCAGATTCTCGATTCCGTGCCAGCTGTCAGTGGTGGTGGTGCTGTCAAGGAAGAAAAGGTGGCAGCTGATACCTCAACTGACCCTTGTCTTAATTTCCCTGCATTCTGA

Protein Analysis

280

Amino Acids

29.72

Weight (kDa)

6.2

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 32 - 86 5.2e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012880)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47655
fragaria_vesca FvH4_2g40660
malus_domestica MD08G1040100.v1.1 MD15G1034500.v1.1
prunus_persica Prupe.1G388600_v2.0.a1 Prupe.1G388600_v2.0.a1
pyrus_communis pycom08g03230 pycom15g03180
rosa_chinensis RchiOBHm_Chr6g0300001
rosa_laevigata RLG00000011373
rosa_multiflora Rmu_sc0001370.1_g000002 Rmu_sc0011230.1_g000001
rosa_roxburghii Rroxscaffold_7G00168210
rosa_rugosa Rorug06G0293400
rosa_samantha Rh6AG405100 Rh6BG413400 Rh6CG420500 Rh6DG406100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 493
AccB1I GGYRCC 1 cut(s) 566
AccII CGCG 2 cut(s) 109, 276
AclI AACGTT 1 cut(s) 426
AcoI YGGCCR 3 cut(s) 38, 87, 725
AcuI CTGAAG 1 cut(s) 39
AcvI CACGTG 1 cut(s) 672
AcyI GRCGYC 1 cut(s) 567
AfaI GTAC 4 cut(s) 509, 515, 521, 563
AfiI CCNNNNNNNGG 3 cut(s) 85, 236, 504
AflIII ACRYGT 1 cut(s) 669
AjnI CCWGG 1 cut(s) 634
AluBI AGCT 3 cut(s) 300, 758, 800
AluI AGCT 3 cut(s) 300, 758, 800
Alw26I GTCTC 2 cut(s) 37, 323
AoxI GGCC 4 cut(s) 38, 87, 213, 725
ApaI GGGCCC 1 cut(s) 217
ApeKI GCWGC 6 cut(s) 65, 111, 186, 641, 644, 797
AspLEI GCGC 3 cut(s) 111, 278, 569
AspS9I GGNCC 2 cut(s) 213, 214
AsuC2I CCSGG 1 cut(s) 655
AsuHPI GGTGA 2 cut(s) 263, 313
BaeGI GKGCMC 1 cut(s) 217
BanI GGYRCC 1 cut(s) 566
BanII GRGCYC 1 cut(s) 217
BarI GAAGNNNNNNTAC 2 cut(s) 122, 154
BauI CACGAG 2 cut(s) 204, 326
BbrPI CACGTG 1 cut(s) 672
BbvI GCAGC 6 cut(s) 52, 98, 173, 628, 631, 809
BccI CCATC 2 cut(s) 595, 673
BceAI ACGGC 2 cut(s) 53, 580
BciT130I CCWGG 1 cut(s) 636
BclI TGATCA 1 cut(s) 691
BcnI CCSGG 1 cut(s) 655
BcoDI GTCTC 2 cut(s) 37, 323
BfoI RGCGCY 1 cut(s) 570
BfuAI ACCTGC 1 cut(s) 493
BlpI GCTNAGC 1 cut(s) 162
Bme1390I CCNGG 2 cut(s) 636, 655
BmgT120I GGNCC 2 cut(s) 213, 214
BmiI GGNNCC 4 cut(s) 214, 215, 545, 568
BmrFI CCNGG 2 cut(s) 636, 655
BoxI GACNNNNGTC 1 cut(s) 819
BpmI CTGGAG 1 cut(s) 280
Bpu10I CCTNAGC 1 cut(s) 471
Bpu1102I GCTNAGC 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 655
BsaAI YACGTR 1 cut(s) 672
BsaHI GRCGYC 1 cut(s) 567
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 4 cut(s) 84, 499, 538, 635
BsaXI ACNNNNNCTCC 3 cut(s) 28, 263, 293
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 236, 504
Bse1I ACTGG 1 cut(s) 203
BseBI CCWGG 1 cut(s) 636
BseDI CCNNGG 4 cut(s) 84, 499, 538, 635
BseLI CCNNNNNNNGG 3 cut(s) 85, 236, 504
BseMII CTCAG 2 cut(s) 176, 485
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 4 cut(s) 271, 274, 283, 352
BseSI GKGCMC 1 cut(s) 217
BseX3I CGGCCG 2 cut(s) 38, 87
BseXI GCAGC 6 cut(s) 52, 98, 173, 628, 631, 809
Bsh1236I CGCG 2 cut(s) 109, 276
Bsh1285I CGRYCG 2 cut(s) 41, 90
BshFI GGCC 4 cut(s) 40, 89, 215, 727
BshNI GGYRCC 1 cut(s) 566
BsiEI CGRYCG 2 cut(s) 41, 90
BsiSI CCGG 2 cut(s) 654, 728
BslFI GGGAC 3 cut(s) 212, 301, 481
BslI CCNNNNNNNGG 3 cut(s) 85, 236, 504
BsmAI GTCTC 2 cut(s) 37, 323
BsmFI GGGAC 3 cut(s) 212, 301, 481
BsmI GAATGC 1 cut(s) 836
BsnI GGCC 4 cut(s) 40, 89, 215, 727
Bso31I GGTCTC 1 cut(s) 323
Bsp120I GGGCCC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 30, 691
Bsp1720I GCTNAGC 1 cut(s) 162
Bsp19I CCATGG 1 cut(s) 538
BspANI GGCC 4 cut(s) 40, 89, 215, 727
BspCNI CTCAG 2 cut(s) 175, 484
BspFNI CGCG 2 cut(s) 109, 276
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 4 cut(s) 214, 215, 545, 568
BspMI ACCTGC 1 cut(s) 493
BspT107I GGYRCC 1 cut(s) 566
BspTNI GGTCTC 1 cut(s) 323
BsrI ACTGG 1 cut(s) 203
BssECI CCNNGG 4 cut(s) 84, 499, 538, 635
BssMI GATC 2 cut(s) 30, 691
BssNI GRCGYC 1 cut(s) 567
BssSI CACGAG 2 cut(s) 204, 326
BssT1I CCWWGG 2 cut(s) 499, 538
Bst2BI CACGAG 2 cut(s) 204, 326
Bst2UI CCWGG 1 cut(s) 636
Bst6I CTCTTC 1 cut(s) 316
BstACI GRCGYC 1 cut(s) 567
BstAPI GCANNNNNTGC 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 672
BstC8I GCNNGC 5 cut(s) 59, 63, 107, 302, 756
BstDEI CTNAG 2 cut(s) 162, 471
BstDSI CCRYGG 1 cut(s) 538
BstFNI CGCG 2 cut(s) 109, 276
BstH2I RGCGCY 1 cut(s) 570
BstHHI GCGC 3 cut(s) 111, 278, 569
BstKTI GATC 2 cut(s) 33, 694
BstMAI GTCTC 2 cut(s) 37, 323
BstMBI GATC 2 cut(s) 30, 691
BstMCI CGRYCG 2 cut(s) 41, 90
BstMWI GCNNNNNNNGC 7 cut(s) 111, 177, 186, 192, 246, 382, 575
BstNI CCWGG 1 cut(s) 636
BstNSI RCATGY 1 cut(s) 61
BstPAI GACNNNNGTC 1 cut(s) 819
BstSCI CCNGG 2 cut(s) 634, 653
BstSLI GKGCMC 1 cut(s) 217
BstUI CGCG 2 cut(s) 109, 276
BstV1I GCAGC 6 cut(s) 52, 98, 173, 628, 631, 809
BstZI CGGCCG 2 cut(s) 38, 87
BsuRI GGCC 4 cut(s) 40, 89, 215, 727
BtgI CCRYGG 1 cut(s) 538
BtsIMutI CAGTG 1 cut(s) 769
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 5 cut(s) 59, 63, 107, 302, 756
CciI TCATGA 1 cut(s) 694
CfoI GCGC 3 cut(s) 111, 278, 569
Cfr13I GGNCC 2 cut(s) 213, 214
Csp6I GTAC 4 cut(s) 508, 514, 520, 562
CviAII CATG 3 cut(s) 58, 539, 695
CviQI GTAC 4 cut(s) 508, 514, 520, 562
DdeI CTNAG 2 cut(s) 162, 471
DinI GGCGCC 1 cut(s) 568
DpnI GATC 2 cut(s) 32, 693
DpnII GATC 2 cut(s) 30, 691
EaeI YGGCCR 3 cut(s) 38, 87, 725
EagI CGGCCG 2 cut(s) 38, 87
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
EciI GGCGGA 1 cut(s) 255
EclXI CGGCCG 2 cut(s) 38, 87
Eco130I CCWWGG 2 cut(s) 499, 538
Eco24I GRGCYC 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 323
Eco52I CGGCCG 2 cut(s) 38, 87
Eco57I CTGAAG 1 cut(s) 39
Eco72I CACGTG 1 cut(s) 672
EcoO109I RGGNCCY 2 cut(s) 213, 214
EcoRII CCWGG 1 cut(s) 634
EcoT14I CCWWGG 2 cut(s) 499, 538
EcoT38I GRGCYC 1 cut(s) 217
EgeI GGCGCC 1 cut(s) 568
EheI GGCGCC 1 cut(s) 568
ErhI CCWWGG 2 cut(s) 499, 538
FaeI CATG 3 cut(s) 61, 542, 698
FaiI YATR 4 cut(s) 59, 540, 627, 696
FaqI GGGAC 3 cut(s) 212, 301, 481
FatI CATG 3 cut(s) 57, 538, 694
FauI CCCGC 3 cut(s) 102, 114, 176
FbaI TGATCA 1 cut(s) 691
FriOI GRGCYC 1 cut(s) 217
GlaI GCGC 3 cut(s) 110, 277, 568
GsuI CTGGAG 1 cut(s) 280
HaeII RGCGCY 1 cut(s) 570
HaeIII GGCC 4 cut(s) 40, 89, 215, 727
HapII CCGG 2 cut(s) 654, 728
HhaI GCGC 3 cut(s) 111, 278, 569
Hin1I GRCGYC 1 cut(s) 567
Hin1II CATG 3 cut(s) 61, 542, 698
Hin6I GCGC 3 cut(s) 109, 276, 567
HinP1I GCGC 3 cut(s) 109, 276, 567
HinfI GANTC 4 cut(s) 202, 359, 739, 746
HpaII CCGG 2 cut(s) 654, 728
HphI GGTGA 2 cut(s) 263, 313
Hpy188I TCNGA 7 cut(s) 28, 358, 391, 456, 594, 738, 842
Hpy188III TCNNGA 5 cut(s) 17, 52, 473, 695, 743
Hpy99I CGWCG 2 cut(s) 236, 598
HpyAV CCTTC 3 cut(s) 315, 431, 692
HpyCH4IV ACGT 3 cut(s) 225, 426, 671
HpyCH4V TGCA 3 cut(s) 114, 180, 836
HpyF10VI GCNNNNNNNGC 7 cut(s) 111, 177, 186, 192, 246, 382, 575
HpyF3I CTNAG 2 cut(s) 162, 471
HpySE526I ACGT 3 cut(s) 225, 426, 671
Hsp92I GRCGYC 1 cut(s) 567
Hsp92II CATG 3 cut(s) 61, 542, 698
HspAI GCGC 3 cut(s) 109, 276, 567
KasI GGCGCC 1 cut(s) 566
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 2 cut(s) 30, 691
Lsp1109I GCAGC 6 cut(s) 52, 98, 173, 628, 631, 809
MaeII ACGT 3 cut(s) 225, 426, 671
MaeIII GTNAC 2 cut(s) 427, 554
MalI GATC 2 cut(s) 32, 693
MboI GATC 2 cut(s) 30, 691
MboII GAAGA 3 cut(s) 303, 642, 797
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 826
Mly113I GGCGCC 1 cut(s) 567
MlyI GAGTC 2 cut(s) 196, 353
MmeI TCCRAC 4 cut(s) 312, 381, 414, 617
MseI TTAA 1 cut(s) 825
MspA1I CMGCKG 2 cut(s) 758, 800
MspI CCGG 2 cut(s) 654, 728
MspR9I CCNGG 2 cut(s) 636, 655
Mva1269I GAATGC 1 cut(s) 836
MvaI CCWGG 1 cut(s) 636
MvnI CGCG 2 cut(s) 109, 276
MwoI GCNNNNNNNGC 7 cut(s) 111, 177, 186, 192, 246, 382, 575
NarI GGCGCC 1 cut(s) 567
NciI CCSGG 1 cut(s) 655
NcoI CCATGG 1 cut(s) 538
NdeII GATC 2 cut(s) 30, 691
NlaIII CATG 3 cut(s) 61, 542, 698
NlaIV GGNNCC 4 cut(s) 214, 215, 545, 568
NmeAIII GCCGAG 2 cut(s) 65, 66
NspI RCATGY 1 cut(s) 61
PaeI GCATGC 1 cut(s) 61
PagI TCATGA 1 cut(s) 694
PcsI WCGNNNNNNNCGW 1 cut(s) 455
PctI GAATGC 1 cut(s) 836
PfeI GAWTC 2 cut(s) 739, 746
PleI GAGTC 2 cut(s) 196, 353
PluTI GGCGCC 1 cut(s) 570
PmaCI CACGTG 1 cut(s) 672
PmlI CACGTG 1 cut(s) 672
PpsI GAGTC 2 cut(s) 196, 353
Ppu21I YACGTR 1 cut(s) 672
PshAI GACNNNNGTC 1 cut(s) 819
Psp1406I AACGTT 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 634
PspCI CACGTG 1 cut(s) 672
PspGI CCWGG 1 cut(s) 634
PspN4I GGNNCC 4 cut(s) 214, 215, 545, 568
PspOMI GGGCCC 1 cut(s) 213
PspPI GGNCC 2 cut(s) 213, 214
PvuII CAGCTG 2 cut(s) 758, 800
RsaI GTAC 4 cut(s) 509, 515, 521, 563
RsaNI GTAC 4 cut(s) 508, 514, 520, 562
SaqAI TTAA 1 cut(s) 825
Sau3AI GATC 2 cut(s) 30, 691
Sau96I GGNCC 2 cut(s) 213, 214
SchI GAGTC 2 cut(s) 196, 353
ScrFI CCNGG 2 cut(s) 636, 655
SduI GDGCHC 1 cut(s) 217
SfoI GGCGCC 1 cut(s) 568
SphI GCATGC 1 cut(s) 61
Sse9I AATT 1 cut(s) 826
SspDI GGCGCC 1 cut(s) 566
StyD4I CCNGG 2 cut(s) 634, 653
StyI CCWWGG 2 cut(s) 499, 538
TaiI ACGT 3 cut(s) 228, 429, 674
TaqI TCGA 1 cut(s) 744
TasI AATT 1 cut(s) 826
TauI GCSGC 4 cut(s) 192, 195, 240, 578
TfiI GAWTC 2 cut(s) 739, 746
Tru1I TTAA 1 cut(s) 825
Tru9I TTAA 1 cut(s) 825
TscAI CASTG 1 cut(s) 769
TseI GCWGC 6 cut(s) 65, 111, 186, 641, 644, 797
TspDTI ATGAA 2 cut(s) 479, 711
TspGWI ACGGA 2 cut(s) 611, 739
TspRI CASTG 1 cut(s) 769
XceI RCATGY 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.