AT1G48570

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006886
Physical Location & Seq
Reverse (-)
17953870 .. 17957719
3850 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48570.1

Sequence Viewer

Length: 1368 bp
ATGTCATCTTCCAGAATATTCCTAGTCGGTAATTCCATATTCCGACCTCACAAACCATCCTTTCCTCTCTCTTTCAATCGTTTTCCATCTGTATCTCTCCGCTTCCGATGCTTCTCCAGTGACGCCGCCGCCGCAGTAGCAACCACCGTGGATTCGGATTCGCCGTCTCTCACTCCTCATCCATGGCCAGAGTGGATAACTTTCGTCGATCGCTTAAAGACGAAAGGATATTTCACCAAAGACACCGAAGATGATACTGTTTATCAGGAAATGATTCTCGTTAAAGATGCTTGTCTCAGCTTCGCTCGTGATCGTTACGACGTTCTCAGATCCTTATCATCAGGAGATGTACAAGCTCTTGTGGAGCGTGGATGCCCTAATCTCTTCAGAAAAACTGTGAATTCTTCCAAAAGGATTCGAGCTCATGTTAAGTTAAACGAAGGAGATGTTTGTGGTTCTTGTGATCTTCGTAGCTCGTGTGATAGAGCTTATGTGATACTTAAGGATACAGAAGCTGATGCTCGAACTGTTGATGTTATGCGTTTACTATTGTTCAATGCGCTTGATTCTATAGTTATCTCTCGAGGTGAAGTTCCACCTGGTAAAGAACTTGTTCATGAGTCTGCAAGAAGACTTCTTTTAGAGTTGGTTGAGTTTAGTGAGAAGCCTTTAATCCCTGCTTTACCAAAACCTTCTTCAAAGGAATCTTCTTTGCCTTCGAAAGAGAGAGCTTTTAAGTCGAGGAATGATGAGCCTTCTCAGCGTGTGGCTTTTAAATCGAGGAATGATGATCCTTCTCAACGTGTGGCTTTTAAATCGAGGAATGATGAGCCTTCTCACCGTGTGGCTTTTAAATCGCGGAACGATGAGTCTTCTCAACGTGATCGACCTCTTTACAGTGCAGATTGGGCTTGTCCTAAATGCGACTTTGTAAACTTTGCCAGAAATGAAAGATGCCGAGAGTGCAATGAAGTCGCTGACAGACGACCTGTTGCTGCTGTTGTCAAGGAAGGTGACTGGCTATGTCCTGAGTGTAGTTTCTTAAACTTCACAAGAAACCAGAGCTGTCTGAAATGCAAAGCAAAGGGACCAAAGAAAACTTCAATGGTGAATATTGTTGAAATGAAGAAAGGAGACTGGAACTGCACTGGGTGTGGATATATGAACTTTGCTAGCAACAAACAGTGTCGAGAGTGCCGAGAACAACGTCACAAGACGCTAGCTGAGCCTGGAGATTGGGAATGCCCCTCATGCGACTTCGTGAACTTTAGGAGAAACGATGCTTGCAAGAAATGCGAGTGCAAACGACCTAGCCAAGCCAATAACGATCAAGAAGACCATACATGGAAACGACCCGCCTTAGTGTAA

Protein Analysis

455

Amino Acids

51.82

Weight (kDa)

8.84

Isoelectric Point (pI)

59.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 336 - 364 9.5e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 859
AciI CCGC 6 cut(s) 100, 126, 129, 132, 859, 1356
AclWI GGATC 2 cut(s) 324, 785
AcoI YGGCCR 1 cut(s) 185
AcsI RAATTY 1 cut(s) 400
AcuI CTGAAG 1 cut(s) 370
AcyI GRCGYC 1 cut(s) 123
AdeI CACNNNGTG 2 cut(s) 844, 1152
AfaI GTAC 1 cut(s) 351
AflII CTTAAG 1 cut(s) 500
AflIII ACRYGT 1 cut(s) 802
AgsI TTSAA 5 cut(s) 76, 556, 699, 1104, 1121
AjnI CCWGG 2 cut(s) 598, 1228
AjuI GAANNNNNNNTTGG 4 cut(s) 679, 711, 1084, 1116
AluBI AGCT 9 cut(s) 300, 356, 422, 474, 488, 515, 731, 1065, 1223
AluI AGCT 9 cut(s) 300, 356, 422, 474, 488, 515, 731, 1065, 1223
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 3 cut(s) 171, 299, 1128
AlwI GGATC 2 cut(s) 324, 785
AlwNI CAGNNNCTG 1 cut(s) 515
Ama87I CYCGRG 1 cut(s) 582
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 995
ApoI RAATTY 1 cut(s) 400
Asp700I GAANNNNTTC 2 cut(s) 273, 612
AspLEI GCGC 1 cut(s) 562
AspS9I GGNCC 1 cut(s) 1088
AsuHPI GGTGA 5 cut(s) 226, 599, 830, 1025, 1120
AsuII TTCGAA 1 cut(s) 719
AsuNHI GCTAGC 2 cut(s) 1172, 1219
AvaI CYCGRG 1 cut(s) 582
AvaII GGWCC 1 cut(s) 1088
BalI TGGCCA 1 cut(s) 187
BanII GRGCYC 1 cut(s) 424
BauI CACGAG 2 cut(s) 306, 475
BbsI GAAGAC 3 cut(s) 637, 864, 1341
Bbv12I GWGCWC 1 cut(s) 424
BbvI GCAGC 1 cut(s) 982
BccI CCATC 2 cut(s) 64, 94
BceAI ACGGC 1 cut(s) 148
BcgI CGANNNNNNTGC 2 cut(s) 955, 989
BciT130I CCWGG 2 cut(s) 600, 1230
BciVI GTATCC 1 cut(s) 499
BcoDI GTCTC 3 cut(s) 171, 299, 1128
BfaI CTAG 4 cut(s) 23, 1173, 1220, 1311
BfmI CTRYAG 1 cut(s) 570
BfrI CTTAAG 1 cut(s) 500
BfuI GTATCC 1 cut(s) 499
BisI GCNGC 4 cut(s) 126, 129, 132, 996
BlpI GCTNAGC 1 cut(s) 1224
BlsI GCNGC 4 cut(s) 127, 130, 133, 997
Bme1390I CCNGG 2 cut(s) 600, 1230
Bme18I GGWCC 1 cut(s) 1088
BmeT110I CYCGRG 1 cut(s) 582
BmgT120I GGNCC 1 cut(s) 1088
BmiI GGNNCC 1 cut(s) 1089
BmrFI CCNGG 2 cut(s) 600, 1230
BmrI ACTGGG 1 cut(s) 1158
BmsI GCATC 6 cut(s) 98, 277, 362, 508, 944, 1270
BmtI GCTAGC 2 cut(s) 1176, 1223
BmuI ACTGGG 1 cut(s) 1158
BpiI GAAGAC 3 cut(s) 637, 864, 1341
BpmI CTGGAG 2 cut(s) 100, 1251
Bpu1102I GCTNAGC 1 cut(s) 1224
Bpu14I TTCGAA 1 cut(s) 719
BsaBI GATNNNNATC 1 cut(s) 334
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 147, 182
Bse1I ACTGG 4 cut(s) 117, 1022, 1142, 1153
Bse3DI GCAATG 1 cut(s) 973
Bse8I GATNNNNATC 1 cut(s) 334
BseBI CCWGG 2 cut(s) 600, 1230
BseDI CCNNGG 2 cut(s) 147, 182
BseGI GGATG 3 cut(s) 56, 178, 377
BseJI GATNNNNATC 1 cut(s) 334
BseMI GCAATG 1 cut(s) 973
BseMII CTCAG 5 cut(s) 310, 340, 773, 1020, 1215
BseNI ACTGG 4 cut(s) 117, 1022, 1142, 1153
BseRI GAGGAG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 982
BsgI GTGCAG 2 cut(s) 921, 1129
Bsh1236I CGCG 1 cut(s) 859
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 1 cut(s) 187
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 424
BsiHKCI CYCGRG 1 cut(s) 582
BslFI GGGAC 1 cut(s) 1101
BsmAI GTCTC 3 cut(s) 171, 299, 1128
BsmBI CGTCTC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 1101
BsmI GAATGC 1 cut(s) 1247
BsnI GGCC 1 cut(s) 187
BsoBI CYCGRG 1 cut(s) 582
Bsp119I TTCGAA 1 cut(s) 719
Bsp1286I GDGCHC 1 cut(s) 424
Bsp1407I TGTACA 1 cut(s) 349
Bsp143I GATC 7 cut(s) 208, 310, 329, 463, 790, 883, 1327
Bsp1720I GCTNAGC 1 cut(s) 1224
Bsp19I CCATGG 1 cut(s) 182
BspACI CCGC 6 cut(s) 100, 126, 129, 132, 859, 1356
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 5 cut(s) 309, 339, 772, 1021, 1216
BspFNI CGCG 1 cut(s) 859
BspHI TCATGA 1 cut(s) 616
BspLI GGNNCC 1 cut(s) 1089
BspOI GCTAGC 2 cut(s) 1176, 1223
BspPI GGATC 2 cut(s) 324, 785
BspT104I TTCGAA 1 cut(s) 719
BspTI CTTAAG 1 cut(s) 500
BsrDI GCAATG 1 cut(s) 973
BsrGI TGTACA 1 cut(s) 349
BsrI ACTGG 4 cut(s) 117, 1022, 1142, 1153
BssECI CCNNGG 2 cut(s) 147, 182
BssMI GATC 7 cut(s) 208, 310, 329, 463, 790, 883, 1327
BssNI GRCGYC 1 cut(s) 123
BssSI CACGAG 2 cut(s) 306, 475
BssT1I CCWWGG 1 cut(s) 182
Bst2BI CACGAG 2 cut(s) 306, 475
Bst2UI CCWGG 2 cut(s) 600, 1230
Bst4CI ACNGT 7 cut(s) 148, 259, 397, 529, 842, 899, 1185
Bst6I CTCTTC 1 cut(s) 389
BstACI GRCGYC 1 cut(s) 123
BstAFI CTTAAG 1 cut(s) 500
BstAPI GCANNNNNTGC 1 cut(s) 1293
BstAUI TGTACA 1 cut(s) 349
BstBI TTCGAA 1 cut(s) 719
BstC8I GCNNGC 3 cut(s) 1174, 1221, 1285
BstDEI CTNAG 6 cut(s) 296, 326, 759, 1029, 1224, 1360
BstDSI CCRYGG 2 cut(s) 147, 182
BstF5I GGATG 3 cut(s) 56, 178, 377
BstFNI CGCG 1 cut(s) 859
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 7 cut(s) 211, 313, 332, 466, 793, 886, 1330
BstMAI GTCTC 3 cut(s) 171, 299, 1128
BstMBI GATC 7 cut(s) 208, 310, 329, 463, 790, 883, 1327
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 9 cut(s) 108, 131, 137, 760, 908, 963, 1225, 1251, 1293
BstNI CCWGG 2 cut(s) 600, 1230
BstSCI CCNGG 2 cut(s) 598, 1228
BstSFI CTRYAG 1 cut(s) 570
BstUI CGCG 1 cut(s) 859
BstV1I GCAGC 1 cut(s) 982
BstV2I GAAGAC 3 cut(s) 637, 864, 1341
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 1 cut(s) 187
BtgI CCRYGG 2 cut(s) 147, 182
BtsCI GGATG 3 cut(s) 56, 178, 377
BtsIMutI CAGTG 4 cut(s) 124, 904, 1146, 1190
Cac8I GCNNGC 3 cut(s) 1174, 1221, 1285
CaiI CAGNNNCTG 1 cut(s) 515
CciI TCATGA 1 cut(s) 616
CfoI GCGC 1 cut(s) 562
Cfr13I GGNCC 1 cut(s) 1088
CseI GACGC 2 cut(s) 131, 1225
CsiI ACCWGGT 1 cut(s) 598
Csp6I GTAC 1 cut(s) 350
CspCI CAANNNNNGTGG 2 cut(s) 129, 164
CviAII CATG 5 cut(s) 183, 425, 617, 1251, 1344
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 6 cut(s) 296, 326, 759, 1029, 1224, 1360
DpnI GATC 7 cut(s) 210, 312, 331, 465, 792, 885, 1329
DpnII GATC 7 cut(s) 208, 310, 329, 463, 790, 883, 1327
DraI TTTAAA 3 cut(s) 775, 814, 853
DraIII CACNNNGTG 2 cut(s) 844, 1152
EaeI YGGCCR 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
Ecl136II GAGCTC 1 cut(s) 422
Eco130I CCWWGG 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 1088
Eco53kI GAGCTC 1 cut(s) 422
Eco57I CTGAAG 1 cut(s) 370
Eco88I CYCGRG 1 cut(s) 582
EcoICRI GAGCTC 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 400
EcoRII CCWGG 2 cut(s) 598, 1228
EcoT14I CCWWGG 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 182
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 5 cut(s) 186, 428, 620, 1254, 1347
FaqI GGGAC 1 cut(s) 1101
FatI CATG 5 cut(s) 182, 424, 616, 1250, 1343
FauI CCCGC 1 cut(s) 1363
Fnu4HI GCNGC 4 cut(s) 126, 129, 132, 996
FokI GGATG 3 cut(s) 43, 165, 384
FriOI GRGCYC 1 cut(s) 424
Fsp4HI GCNGC 4 cut(s) 126, 129, 132, 996
FspBI CTAG 4 cut(s) 23, 1173, 1220, 1311
GlaI GCGC 1 cut(s) 561
GluI GCNGC 4 cut(s) 126, 129, 132, 996
GsuI CTGGAG 2 cut(s) 100, 1251
HaeIII GGCC 1 cut(s) 187
HgaI GACGC 2 cut(s) 131, 1225
HhaI GCGC 1 cut(s) 562
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 5 cut(s) 186, 428, 620, 1254, 1347
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HinfI GANTC 8 cut(s) 152, 158, 274, 415, 566, 620, 704, 869
HphI GGTGA 5 cut(s) 226, 599, 830, 1025, 1120
Hpy166II GTNNAC 3 cut(s) 545, 934, 1264
Hpy188I TCNGA 6 cut(s) 44, 107, 157, 329, 389, 1071
Hpy8I GTNNAC 3 cut(s) 545, 934, 1264
Hpy99I CGWCG 2 cut(s) 209, 323
HpyAV CCTTC 7 cut(s) 434, 702, 726, 765, 804, 843, 1004
HpyCH4III ACNGT 7 cut(s) 148, 259, 397, 529, 842, 899, 1185
HpyCH4IV ACGT 4 cut(s) 321, 802, 880, 1207
HpyCH4V TGCA 7 cut(s) 626, 902, 966, 1077, 1146, 1287, 1302
HpyF10VI GCNNNNNNNGC 9 cut(s) 108, 131, 137, 760, 908, 963, 1225, 1251, 1293
HpyF3I CTNAG 6 cut(s) 296, 326, 759, 1029, 1224, 1360
HpySE526I ACGT 4 cut(s) 321, 802, 880, 1207
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 5 cut(s) 186, 428, 620, 1254, 1347
HspAI GCGC 1 cut(s) 560
Kzo9I GATC 7 cut(s) 208, 310, 329, 463, 790, 883, 1327
LmnI GCTCC 1 cut(s) 364
Lsp1109I GCAGC 1 cut(s) 982
LweI GCATC 6 cut(s) 98, 277, 362, 508, 944, 1270
MabI ACCWGGT 1 cut(s) 598
MaeI CTAG 4 cut(s) 23, 1173, 1220, 1311
MaeII ACGT 4 cut(s) 321, 802, 880, 1207
MaeIII GTNAC 4 cut(s) 119, 314, 1013, 1208
MalI GATC 7 cut(s) 210, 312, 331, 465, 792, 885, 1329
MboI GATC 7 cut(s) 208, 310, 329, 463, 790, 883, 1327
MflI RGATCY 1 cut(s) 329
MhlI GDGCHC 1 cut(s) 424
MlsI TGGCCA 1 cut(s) 187
MluCI AATT 2 cut(s) 31, 400
MluNI TGGCCA 1 cut(s) 187
MlyI GAGTC 2 cut(s) 629, 878
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 9 cut(s) 57, 75, 186, 578, 735, 774, 813, 900, 1258
Mox20I TGGCCA 1 cut(s) 187
MroXI GAANNNNTTC 2 cut(s) 273, 612
MscI TGGCCA 1 cut(s) 187
Msp20I TGGCCA 1 cut(s) 187
MspCI CTTAAG 1 cut(s) 500
MspR9I CCNGG 2 cut(s) 600, 1230
Mva1269I GAATGC 1 cut(s) 1247
MvaI CCWGG 2 cut(s) 600, 1230
MvnI CGCG 1 cut(s) 859
MwoI GCNNNNNNNGC 9 cut(s) 108, 131, 137, 760, 908, 963, 1225, 1251, 1293
NcoI CCATGG 1 cut(s) 182
NdeII GATC 7 cut(s) 208, 310, 329, 463, 790, 883, 1327
NheI GCTAGC 2 cut(s) 1172, 1219
NlaIII CATG 5 cut(s) 186, 428, 620, 1254, 1347
NlaIV GGNNCC 1 cut(s) 1089
NmeAIII GCCGAG 2 cut(s) 983, 1223
NmuCI GTSAC 3 cut(s) 119, 1013, 1208
NspV TTCGAA 1 cut(s) 719
PaeR7I CTCGAG 1 cut(s) 582
PagI TCATGA 1 cut(s) 616
PcsI WCGNNNNNNNCGW 2 cut(s) 161, 1195
PctI GAATGC 1 cut(s) 1247
PdmI GAANNNNTTC 2 cut(s) 273, 612
PfeI GAWTC 6 cut(s) 152, 158, 274, 415, 566, 704
PkrI GCNGC 4 cut(s) 127, 130, 133, 997
Ple19I CGATCG 1 cut(s) 211
PleI GAGTC 2 cut(s) 628, 877
PpsI GAGTC 2 cut(s) 628, 877
Psp124BI GAGCTC 1 cut(s) 424
Psp6I CCWGG 2 cut(s) 598, 1228
PspGI CCWGG 2 cut(s) 598, 1228
PspN4I GGNNCC 1 cut(s) 1089
PspPI GGNCC 1 cut(s) 1088
PstNI CAGNNNCTG 1 cut(s) 515
PsuI RGATCY 1 cut(s) 329
PvuI CGATCG 1 cut(s) 211
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
SacI GAGCTC 1 cut(s) 424
SatI GCNGC 4 cut(s) 126, 129, 132, 996
Sau3AI GATC 7 cut(s) 208, 310, 329, 463, 790, 883, 1327
Sau96I GGNCC 1 cut(s) 1088
SchI GAGTC 2 cut(s) 629, 878
ScrFI CCNGG 2 cut(s) 600, 1230
SduI GDGCHC 1 cut(s) 424
SexAI ACCWGGT 1 cut(s) 598
SfaNI GCATC 6 cut(s) 98, 277, 362, 508, 944, 1270
SfcI CTRYAG 1 cut(s) 570
Sfr274I CTCGAG 1 cut(s) 582
SfuI TTCGAA 1 cut(s) 719
SinI GGWCC 1 cut(s) 1088
SlaI CTCGAG 1 cut(s) 582
SmlI CTYRAG 2 cut(s) 500, 582
SmoI CTYRAG 2 cut(s) 500, 582
Sse9I AATT 2 cut(s) 31, 400
SsiI CCGC 6 cut(s) 100, 126, 129, 132, 859, 1356
SspI AATATT 2 cut(s) 18, 1114
SspMI CTAG 4 cut(s) 23, 1173, 1220, 1311
SstI GAGCTC 1 cut(s) 424
StyD4I CCNGG 2 cut(s) 598, 1228
StyI CCWWGG 1 cut(s) 182
TaaI ACNGT 7 cut(s) 148, 259, 397, 529, 842, 899, 1185
TaiI ACGT 4 cut(s) 324, 805, 883, 1210
TasI AATT 2 cut(s) 31, 400
TatI WGTACW 1 cut(s) 349
TauI GCSGC 3 cut(s) 128, 131, 134
TfiI GAWTC 6 cut(s) 152, 158, 274, 415, 566, 704
TscAI CASTG 4 cut(s) 124, 904, 1153, 1190
TseFI GTSAC 3 cut(s) 119, 1013, 1208
TseI GCWGC 1 cut(s) 995
Tsp45I GTSAC 3 cut(s) 119, 1013, 1208
TspDTI ATGAA 5 cut(s) 605, 963, 984, 1139, 1178
TspRI CASTG 4 cut(s) 124, 904, 1153, 1190
Vha464I CTTAAG 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 1088
XapI RAATTY 1 cut(s) 400
XcmI CCANNNNNNNNNTGG 1 cut(s) 189
XhoI CTCGAG 1 cut(s) 582
XmnI GAANNNNTTC 2 cut(s) 273, 612
XspI CTAG 4 cut(s) 23, 1173, 1220, 1311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.