FvH4_5g17400

Zinc finger protein VAR3

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
9964237 .. 9967366
3130 bp
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UTR
Exon/CDS
Intron
FvH4_5g17400.t4

Sequence Viewer

Length: 1317 bp
ATGTCATCCGCTTCAAAGTTCATCCGCTTCGGCACCGCGCTCTTCCGTTTCCCCAAATTACCTATCTCTCTTTCTCCTCCTCCTTCTCTCCTCTCTCTCAAACCGTTCTCCGCCTCACAATCCATCCTCTTCTCCCGCCACTGCTCCTCCTCCTCCGCCGCCGCCGCTTCCTCCGTCGATACCGCCACCTCTAGTATCACAGAAGCCCCGGTGCACCACCCCTGGCCGGAGTGGGTGGCTTTCGTCGATGGCCTGAAGACCAAGGGCTACTTTCTCAAACCGCCACCGCCTGCCGAGGACGGCGAGACTGACGGCGTTTACACCGATATGAATCAGTTGAAGGATGCTTGCCTTAGCTTTGCTCGTGACCGCTATGATGTTTTCAAATCATTGTCTGTCGAAGACATTCAGGCACTTGTGGAGGGTGGATGTCCCAATTTGTTGCGAAAAGCTGTGAATTCAGGGAAGCGGTTGAGATTCTACGTGAAGCTGGACGAAGGGGATGTTTGCGGTGGTTGCAATCTGCGAGGTTCCTGTGATAGAGCTTATGTCGTTCTTAATGAATTTGAAGCAGCTGCCCGTACGGTGGATATAGTGCGAATATTAATGTACTATGCGCTAGATCCGCTCGTTATTTCCGGGCAGCAGAAACCTCCTGGCAGAGAGCTTGTAGAAACGTCTGCAAGAAAACTGCTGGCTAAGTTGCTTCAACTCAGTGAAACAGATGTTGACCCATCACTGCCAATGCCTGCGGCCAAAGCTCTTCCAAAGAAAAAACCATCTATCCGTTTGATGGATGATGAGCTGTCTCAAGCTGCTGAAATGAAGAGAGGAGATTGGATGTGTCCCAAATGCAATTTTCTGAACTTCGCAAAAAATATAAGATGTCTAGAGTGTAAAGAGGAGGGCCCACGAAAAGTTGATATGAGTGATGTTGAAATGAAAAAAGGGGACTGGGTCTGCTCTGAGTGCAATTTCATGAACTTCGCTAGAAATGTTCGCTGCCTAAAGTGTGAAGCTCAAGGGCCAAAGAGACCCGGTGTAGATGATGTCAAAATGAAGAAAGGAGACTGGAACTGCCCACAGTGTGGGTTCATGAATTTCGCAAGCAAAAAGAATTGTCTCCGCTGTCAAGAGGTACGGCCCAAGCAAAACCCTGCAGATTGGGACTGTCCCTCATGTAATTTCATGAATTATTCAAGAAACACGGAATGCCTGAAGTGTAAATGTGAACGCCCTGACAGAGACACAACAGTATACCCTAAGAAGAAATTTCATACCGAGTATGAGGAGCACGAATGGAGGCGTCCTCGCTAG

Protein Analysis

439

Amino Acids

49.38

Weight (kDa)

8.7

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 315 - 343 2.4e-08 Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP PF00641 354 - 382 5.6e-08 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 1088
AccBSI CCGCTC 1 cut(s) 628
AccI GTMKAC 1 cut(s) 1257
AccII CGCG 1 cut(s) 38
AclWI GGATC 1 cut(s) 617
AcoI YGGCCR 2 cut(s) 224, 753
AcsI RAATTY 4 cut(s) 457, 563, 1099, 1271
AcuI CTGAAG 2 cut(s) 275, 1238
AcyI GRCGYC 1 cut(s) 1306
AdeI CACNNNGTG 1 cut(s) 1088
AfaI GTAC 3 cut(s) 583, 611, 1140
AfiI CCNNNNNNNGG 4 cut(s) 226, 586, 793, 1088
AgsI TTSAA 7 cut(s) 15, 340, 385, 569, 710, 938, 1200
AjnI CCWGG 2 cut(s) 221, 655
Alw21I GWGCWC 2 cut(s) 216, 1296
Alw26I GTCTC 6 cut(s) 299, 813, 1027, 1062, 1127, 1239
Alw44I GTGCAC 1 cut(s) 212
AlwI GGATC 1 cut(s) 617
AoxI GGCC 6 cut(s) 224, 250, 753, 907, 1025, 1142
ApaI GGGCCC 1 cut(s) 911
ApaLI GTGCAC 1 cut(s) 212
ApeKI GCWGC 5 cut(s) 572, 575, 643, 815, 1002
ApoI RAATTY 4 cut(s) 457, 563, 1099, 1271
AseI ATTAAT 1 cut(s) 605
Asp700I GAANNNNTTC 1 cut(s) 405
AspLEI GCGC 2 cut(s) 40, 619
AspS9I GGNCC 4 cut(s) 907, 908, 1025, 1143
AsuC2I CCSGG 3 cut(s) 209, 640, 1038
BaeGI GKGCMC 2 cut(s) 216, 911
BanI GGYRCC 1 cut(s) 32
BanII GRGCYC 1 cut(s) 911
BauI CACGAG 1 cut(s) 363
BbsI GAAGAC 2 cut(s) 263, 408
Bbv12I GWGCWC 2 cut(s) 216, 1296
BbvI GCAGC 5 cut(s) 562, 584, 655, 802, 989
BccI CCATC 5 cut(s) 131, 242, 742, 787, 787
BceAI ACGGC 3 cut(s) 316, 328, 1157
BciT130I CCWGG 2 cut(s) 223, 657
BcnI CCSGG 3 cut(s) 209, 640, 1038
BcoDI GTCTC 6 cut(s) 299, 813, 1027, 1062, 1127, 1239
BfaI CTAG 5 cut(s) 192, 620, 890, 990, 1315
BfmI CTRYAG 1 cut(s) 1158
BisI GCNGC 9 cut(s) 159, 162, 165, 573, 576, 644, 753, 816, 1003
BlsI GCNGC 9 cut(s) 160, 163, 166, 574, 577, 645, 754, 817, 1004
Bme1390I CCNGG 5 cut(s) 209, 223, 640, 657, 1038
BmgT120I GGNCC 4 cut(s) 907, 908, 1025, 1143
BmiI GGNNCC 3 cut(s) 34, 532, 909
BmrFI CCNGG 5 cut(s) 209, 223, 640, 657, 1038
BmrI ACTGGG 1 cut(s) 964
BmsI GCATC 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 964
BpiI GAAGAC 2 cut(s) 263, 408
BplI GAGNNNNNCTC 1 cut(s) 1294
Bpu10I CCTNAGC 1 cut(s) 353
BpuEI CTTGAG 2 cut(s) 795, 1005
BpuMI CCSGG 3 cut(s) 209, 640, 1038
BsaAI YACGTR 1 cut(s) 484
BsaBI GATNNNNATC 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 1306
BsaI GGTCTC 1 cut(s) 1027
BsaJI CCNNGG 4 cut(s) 207, 221, 261, 294
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 4 cut(s) 226, 586, 793, 1088
Bse1I ACTGG 2 cut(s) 959, 1076
Bse8I GATNNNNATC 1 cut(s) 330
BseBI CCWGG 2 cut(s) 223, 657
BseDI CCNNGG 4 cut(s) 207, 221, 261, 294
BseGI GGATG 8 cut(s) 5, 21, 123, 349, 434, 508, 802, 846
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 4 cut(s) 226, 586, 793, 1088
BseMII CTCAG 2 cut(s) 727, 957
BseNI ACTGG 2 cut(s) 959, 1076
BseRI GAGGAG 9 cut(s) 66, 69, 80, 136, 139, 142, 846, 917, 1304
BseSI GKGCMC 2 cut(s) 216, 911
BseXI GCAGC 5 cut(s) 562, 584, 655, 802, 989
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 6 cut(s) 226, 252, 755, 909, 1027, 1144
BshNI GGYRCC 1 cut(s) 32
BsiHKAI GWGCWC 2 cut(s) 216, 1296
BsiSI CCGG 4 cut(s) 209, 227, 639, 1038
BsiWI CGTACG 1 cut(s) 581
BslFI GGGAC 5 cut(s) 417, 831, 965, 1158, 1181
BslI CCNNNNNNNGG 4 cut(s) 226, 586, 793, 1088
BsmAI GTCTC 6 cut(s) 299, 813, 1027, 1062, 1127, 1239
BsmFI GGGAC 5 cut(s) 417, 831, 965, 1158, 1181
BsmI GAATGC 1 cut(s) 1217
BsnI GGCC 6 cut(s) 226, 252, 755, 909, 1027, 1144
Bso31I GGTCTC 1 cut(s) 1027
Bsp120I GGGCCC 1 cut(s) 907
Bsp1286I GDGCHC 3 cut(s) 216, 911, 1296
Bsp143I GATC 1 cut(s) 622
BspANI GGCC 6 cut(s) 226, 252, 755, 909, 1027, 1144
BspCNI CTCAG 2 cut(s) 726, 958
BspFNI CGCG 1 cut(s) 38
BspHI TCATGA 3 cut(s) 978, 1095, 1188
BspLI GGNNCC 3 cut(s) 34, 532, 909
BspMAI CTGCAG 1 cut(s) 1162
BspPI GGATC 1 cut(s) 617
BspQI GCTCTTC 2 cut(s) 47, 768
BspT107I GGYRCC 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 1027
BsrBI CCGCTC 1 cut(s) 628
BsrI ACTGG 2 cut(s) 959, 1076
BssECI CCNNGG 4 cut(s) 207, 221, 261, 294
BssMI GATC 1 cut(s) 622
BssNAI GTATAC 1 cut(s) 1258
BssNI GRCGYC 1 cut(s) 1306
BssSI CACGAG 1 cut(s) 363
BssT1I CCWWGG 1 cut(s) 261
Bst1107I GTATAC 1 cut(s) 1258
Bst2BI CACGAG 1 cut(s) 363
Bst2UI CCWGG 2 cut(s) 223, 657
Bst4CI ACNGT 5 cut(s) 105, 586, 1086, 1172, 1255
Bst6I CTCTTC 4 cut(s) 47, 134, 768, 821
BstACI GRCGYC 1 cut(s) 1306
BstBAI YACGTR 1 cut(s) 484
BstC8I GCNNGC 5 cut(s) 291, 349, 696, 750, 1108
BstDEI CTNAG 5 cut(s) 353, 699, 713, 966, 1263
BstF5I GGATG 8 cut(s) 5, 21, 123, 349, 434, 508, 802, 846
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 2 cut(s) 40, 619
BstKTI GATC 1 cut(s) 625
BstMAI GTCTC 6 cut(s) 299, 813, 1027, 1062, 1127, 1239
BstMBI GATC 1 cut(s) 622
BstMWI GCNNNNNNNGC 5 cut(s) 164, 516, 625, 758, 969
BstNI CCWGG 2 cut(s) 223, 657
BstSCI CCNGG 5 cut(s) 207, 221, 638, 655, 1036
BstSFI CTRYAG 1 cut(s) 1158
BstSLI GKGCMC 2 cut(s) 216, 911
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 5 cut(s) 562, 584, 655, 802, 989
BstV2I GAAGAC 2 cut(s) 263, 408
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
BstZ17I GTATAC 1 cut(s) 1258
BsuRI GGCC 6 cut(s) 226, 252, 755, 909, 1027, 1144
BtsCI GGATG 8 cut(s) 5, 21, 123, 349, 434, 508, 802, 846
BtsI GCAGTG 2 cut(s) 139, 737
BtsIMutI CAGTG 4 cut(s) 139, 721, 737, 1091
Cac8I GCNNGC 5 cut(s) 291, 349, 696, 750, 1108
CciI TCATGA 3 cut(s) 978, 1095, 1188
CfoI GCGC 2 cut(s) 40, 619
Cfr13I GGNCC 4 cut(s) 907, 908, 1025, 1143
CseI GACGC 1 cut(s) 1295
Csp6I GTAC 3 cut(s) 582, 610, 1139
CviAII CATG 4 cut(s) 979, 1096, 1179, 1189
CviQI GTAC 3 cut(s) 582, 610, 1139
DdeI CTNAG 5 cut(s) 353, 699, 713, 966, 1263
DpnI GATC 1 cut(s) 624
DpnII GATC 1 cut(s) 622
DraIII CACNNNGTG 1 cut(s) 1088
EaeI YGGCCR 2 cut(s) 224, 753
Eam1104I CTCTTC 4 cut(s) 47, 134, 768, 821
EarI CTCTTC 4 cut(s) 47, 134, 768, 821
EciI GGCGGA 2 cut(s) 100, 145
Eco130I CCWWGG 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 911
Eco31I GGTCTC 1 cut(s) 1027
Eco57I CTGAAG 2 cut(s) 275, 1238
EcoO109I RGGNCCY 1 cut(s) 907
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 221, 655
EcoT14I CCWWGG 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 911
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 4 cut(s) 982, 1099, 1182, 1192
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 5 cut(s) 417, 831, 965, 1158, 1181
FatI CATG 4 cut(s) 978, 1095, 1178, 1188
FauI CCCGC 1 cut(s) 143
FblI GTMKAC 1 cut(s) 1257
Fnu4HI GCNGC 9 cut(s) 159, 162, 165, 573, 576, 644, 753, 816, 1003
FokI GGATG 7 cut(s) 8, 110, 356, 441, 515, 809, 853
FriOI GRGCYC 1 cut(s) 911
Fsp4HI GCNGC 9 cut(s) 159, 162, 165, 573, 576, 644, 753, 816, 1003
FspBI CTAG 5 cut(s) 192, 620, 890, 990, 1315
GlaI GCGC 2 cut(s) 39, 618
GluI GCNGC 9 cut(s) 159, 162, 165, 573, 576, 644, 753, 816, 1003
HaeIII GGCC 6 cut(s) 226, 252, 755, 909, 1027, 1144
HapII CCGG 4 cut(s) 209, 227, 639, 1038
HgaI GACGC 1 cut(s) 1295
HhaI GCGC 2 cut(s) 40, 619
Hin1I GRCGYC 1 cut(s) 1306
Hin1II CATG 4 cut(s) 982, 1099, 1182, 1192
Hin6I GCGC 2 cut(s) 38, 617
HinP1I GCGC 2 cut(s) 38, 617
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HinfI GANTC 2 cut(s) 331, 477
HpaII CCGG 4 cut(s) 209, 227, 639, 1038
Hpy166II GTNNAC 5 cut(s) 214, 319, 730, 1232, 1258
Hpy188I TCNGA 2 cut(s) 864, 967
Hpy188III TCNNGA 7 cut(s) 365, 890, 979, 1096, 1133, 1189, 1200
Hpy8I GTNNAC 5 cut(s) 214, 319, 730, 1232, 1258
Hpy99I CGWCG 2 cut(s) 179, 248
HpyAV CCTTC 3 cut(s) 93, 334, 491
HpyCH4III ACNGT 5 cut(s) 105, 586, 1086, 1172, 1255
HpyCH4IV ACGT 2 cut(s) 483, 677
HpyCH4V TGCA 6 cut(s) 214, 519, 683, 855, 972, 1160
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 516, 625, 758, 969
HpyF3I CTNAG 5 cut(s) 353, 699, 713, 966, 1263
HpySE526I ACGT 2 cut(s) 483, 677
Hsp92I GRCGYC 1 cut(s) 1306
Hsp92II CATG 4 cut(s) 982, 1099, 1182, 1192
HspAI GCGC 2 cut(s) 38, 617
Kzo9I GATC 1 cut(s) 622
LguI GCTCTTC 2 cut(s) 47, 768
LmnI GCTCC 2 cut(s) 149, 1291
Lsp1109I GCAGC 5 cut(s) 562, 584, 655, 802, 989
LweI GCATC 1 cut(s) 334
MaeI CTAG 5 cut(s) 192, 620, 890, 990, 1315
MaeII ACGT 2 cut(s) 483, 677
MaeIII GTNAC 1 cut(s) 365
MalI GATC 1 cut(s) 624
MbiI CCGCTC 1 cut(s) 628
MboI GATC 1 cut(s) 622
MboII GAAGA 8 cut(s) 34, 121, 268, 413, 755, 838, 1072, 1279
MflI RGATCY 1 cut(s) 622
MhlI GDGCHC 3 cut(s) 216, 911, 1296
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 2 cut(s) 558, 605
MslI CAYNNNNRTG 1 cut(s) 326
MspA1I CMGCKG 2 cut(s) 575, 1128
MspI CCGG 4 cut(s) 209, 227, 639, 1038
MspR9I CCNGG 5 cut(s) 209, 223, 640, 657, 1038
Mva1269I GAATGC 1 cut(s) 1217
MvaI CCWGG 2 cut(s) 223, 657
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 5 cut(s) 164, 516, 625, 758, 969
NciI CCSGG 3 cut(s) 209, 640, 1038
NdeII GATC 1 cut(s) 622
NlaIII CATG 4 cut(s) 982, 1099, 1182, 1192
NlaIV GGNNCC 3 cut(s) 34, 532, 909
NmeAIII GCCGAG 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 365
PagI TCATGA 3 cut(s) 978, 1095, 1188
PciSI GCTCTTC 2 cut(s) 47, 768
PctI GAATGC 1 cut(s) 1217
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 2 cut(s) 331, 477
Pfl23II CGTACG 1 cut(s) 581
PflFI GACNNNGTC 1 cut(s) 956
PflMI CCANNNNNTGG 1 cut(s) 1088
PkrI GCNGC 9 cut(s) 160, 163, 166, 574, 577, 645, 754, 817, 1004
Ppu21I YACGTR 1 cut(s) 484
PshBI ATTAAT 1 cut(s) 605
Psp6I CCWGG 2 cut(s) 221, 655
PspGI CCWGG 2 cut(s) 221, 655
PspLI CGTACG 1 cut(s) 581
PspN4I GGNNCC 3 cut(s) 34, 532, 909
PspOMI GGGCCC 1 cut(s) 907
PspPI GGNCC 4 cut(s) 907, 908, 1025, 1143
PstI CTGCAG 1 cut(s) 1162
PsuI RGATCY 1 cut(s) 622
PsyI GACNNNGTC 1 cut(s) 956
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 3 cut(s) 583, 611, 1140
RsaNI GTAC 3 cut(s) 582, 610, 1139
RseI CAYNNNNRTG 1 cut(s) 326
SapI GCTCTTC 2 cut(s) 47, 768
SaqAI TTAA 2 cut(s) 558, 605
SatI GCNGC 9 cut(s) 159, 162, 165, 573, 576, 644, 753, 816, 1003
Sau3AI GATC 1 cut(s) 622
Sau96I GGNCC 4 cut(s) 907, 908, 1025, 1143
ScrFI CCNGG 5 cut(s) 209, 223, 640, 657, 1038
SduI GDGCHC 3 cut(s) 216, 911, 1296
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 1158
SmiMI CAYNNNNRTG 1 cut(s) 326
SmlI CTYRAG 2 cut(s) 810, 1020
SmoI CTYRAG 2 cut(s) 810, 1020
SspI AATATT 1 cut(s) 603
SspMI CTAG 5 cut(s) 192, 620, 890, 990, 1315
StyD4I CCNGG 5 cut(s) 207, 221, 638, 655, 1036
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 5 cut(s) 105, 586, 1086, 1172, 1255
TaiI ACGT 2 cut(s) 486, 680
TaqI TCGA 3 cut(s) 177, 246, 399
TatI WGTACW 1 cut(s) 609
TauI GCSGC 4 cut(s) 161, 164, 167, 755
TfiI GAWTC 2 cut(s) 331, 477
Tru1I TTAA 2 cut(s) 558, 605
Tru9I TTAA 2 cut(s) 558, 605
TscAI CASTG 4 cut(s) 146, 721, 744, 1091
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 5 cut(s) 572, 575, 643, 815, 1002
Tsp45I GTSAC 1 cut(s) 365
TspGWI ACGGA 4 cut(s) 35, 163, 776, 1223
TspRI CASTG 4 cut(s) 146, 721, 744, 1091
Tth111I GACNNNGTC 1 cut(s) 956
Van91I CCANNNNNTGG 1 cut(s) 1088
VneI GTGCAC 1 cut(s) 212
VspI ATTAAT 1 cut(s) 605
XapI RAATTY 4 cut(s) 457, 563, 1099, 1271
XbaI TCTAGA 1 cut(s) 889
XmiI GTMKAC 1 cut(s) 1257
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 5 cut(s) 192, 620, 890, 990, 1315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.