Rh7CG014400

Zinc finger protein VAR3

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
1079076 .. 1082152
3077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG014400.1

Sequence Viewer

Length: 1314 bp
ATGTCCTCTGCTTCCAAGTTCATTCGCTTCGGCACCGCCCTCTTCCATTTTCCCAAACCAACTCTCTCTCCTCCTCCCTCTCCTTCCCTCCTCCCTCTCAAACCCTTCGCCACCTCACAATCTCTCCTCTTCTCCCGCCACTGCTCCTCCTCCGCCGCCGCAGTCGCCTCCGTCGATACCTTCACCGCCAGTAGCACCGAAGCCCCTGTGCACCACCCCTGGCCGGAGTGGGTGGCTTTCGTCGACGGGCTGAAGACCAAGGGCTACTTCATCAAACCGCCGCCGCCTGCGGAGGACGGCGAGAGTGACGGCGTTTATACGGACATGAATCAGTTGAAGGATGCTTGCCTTAGCTTTGCTCGTGACCGCTTTGATGTTTTCAAATCATTGACTGTGGCAGACATTCAAGCACTTGTGGAGGGTGGATGTCCCAATCTGTTGCGAAAAGCTGTGAATTCAGGAAAGCGATTGAGATTGTACGTGAAGCTGGATGAAGGCGATGTTTGTGGTGGTTGCAATCTGCGAGGTTCCTGTGACAGAGCTTATGTTGTTCTTAACGAATCTGAAGCCGCTGCCCGCACAGTGGATATAGTGCGAATATTAATGTATTATGCACTAGATCCACTCGTTATTTCTGGGCAAGAGAAACCTCCTGGTAGAGAGCTTATAGAAACATCTGCAAGAAAACTGCTGTCCAAGTTGCTTCAACTCAGTGAAACAGCTGTTGACCCGTCACTGCCAATGCCTGCGGCCAAAGTTCTTCCGAAGAAAAAACCATCTGTAAGTTTCATGGATGATGAGCCGTCTCAAACTGCTGAAATGAAGAGAGGAGATTGGATGTGTCCCAGGTGCAATTTTCTGAACTTCGCTAAAAATATAAGATGTCTAGAGTGTAAAGAAGAGGGTCCGCGAAAAGTTGATATGGGTGATGTTGAAATGAAAAAAGGAGACTGGGTCTGCTCTGAGTGCAATTTCATGAACTTCGCTAGAAATTTTCGCTGCCTAAAGTGCAAAACTCAAGGGCCAAAGAGACCCGGTGTAGATGATGTCAAAATGAAGAAAGGAGACTGGAACTGCCCACAGTGTGGGTTCATGAATTTTGCAAGCAAAAGGAATTGTTTGCGCTGTGAAGAGGTACGGCCCAAGATAAACCCTGGAGATTGGGACTGCCCCTCATGTAATTTCATGAATTATGGGAGAAACACAGAATGCCTGAAGTGTAAATGTGAACGCCCTGAAGGAGAAACTACAGTATACCCTAAGAAGAAACTACATACCGAATATGAGGAGCAAATATGGAGGCGTCCTCGCTAG

Protein Analysis

437

Amino Acids

49.05

Weight (kDa)

8.71

Isoelectric Point (pI)

47.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 314 - 341 4.9e-07 Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP PF00641 353 - 381 6.6e-08 Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP PF00641 386 - 412 1.5e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 32
AccB7I CCANNNNNTGG 1 cut(s) 1085
AccI GTMKAC 2 cut(s) 243, 1254
AccII CGCG 1 cut(s) 910
AclWI GGATC 1 cut(s) 614
AcoI YGGCCR 2 cut(s) 221, 750
AcsI RAATTY 3 cut(s) 454, 991, 1096
AcuI CTGAAG 4 cut(s) 272, 585, 1235, 1257
AcyI GRCGYC 1 cut(s) 1303
AdeI CACNNNGTG 1 cut(s) 1085
AfaI GTAC 2 cut(s) 479, 1137
AfiI CCNNNNNNNGG 3 cut(s) 223, 583, 1085
AgsI TTSAA 5 cut(s) 337, 382, 407, 707, 935
AjnI CCWGG 4 cut(s) 218, 652, 845, 1153
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AluBI AGCT 6 cut(s) 354, 449, 487, 542, 664, 722
AluI AGCT 6 cut(s) 354, 449, 487, 542, 664, 722
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 4 cut(s) 810, 942, 1024, 1059
Alw44I GTGCAC 1 cut(s) 209
AlwI GGATC 1 cut(s) 614
AoxI GGCC 4 cut(s) 221, 750, 1022, 1139
ApaLI GTGCAC 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 572, 999
ApoI RAATTY 3 cut(s) 454, 991, 1096
AseI ATTAAT 1 cut(s) 602
AspLEI GCGC 1 cut(s) 1125
AspS9I GGNCC 3 cut(s) 905, 1022, 1140
AsuC2I CCSGG 1 cut(s) 1035
AsuHPI GGTGA 2 cut(s) 175, 938
AvaII GGWCC 1 cut(s) 905
BaeGI GKGCMC 1 cut(s) 213
BanI GGYRCC 1 cut(s) 32
BauI CACGAG 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 559, 986
BccI CCATC 1 cut(s) 784
BceAI ACGGC 4 cut(s) 313, 325, 787, 1154
BciT130I CCWGG 4 cut(s) 220, 654, 847, 1155
BcnI CCSGG 1 cut(s) 1035
BcoDI GTCTC 4 cut(s) 810, 942, 1024, 1059
BfaI CTAG 4 cut(s) 617, 887, 987, 1312
BfmI CTRYAG 1 cut(s) 1248
BisI GCNGC 8 cut(s) 156, 159, 281, 284, 570, 573, 750, 1000
BlsI GCNGC 8 cut(s) 157, 160, 282, 285, 571, 574, 751, 1001
Bme1390I CCNGG 5 cut(s) 220, 654, 847, 1035, 1155
Bme18I GGWCC 1 cut(s) 905
BmgT120I GGNCC 3 cut(s) 905, 1022, 1140
BmiI GGNNCC 3 cut(s) 34, 529, 906
BmrFI CCNGG 5 cut(s) 220, 654, 847, 1035, 1155
BmrI ACTGGG 1 cut(s) 961
BmsI GCATC 1 cut(s) 331
BmuI ACTGGG 1 cut(s) 961
BpiI GAAGAC 1 cut(s) 260
BplI GAGNNNNNCTC 1 cut(s) 1291
BpmI CTGGAG 1 cut(s) 1176
Bpu10I CCTNAGC 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 1002
BpuMI CCSGG 1 cut(s) 1035
BsaAI YACGTR 1 cut(s) 481
BsaHI GRCGYC 1 cut(s) 1303
BsaI GGTCTC 1 cut(s) 1024
BsaJI CCNNGG 4 cut(s) 218, 258, 845, 1153
BsaXI ACNNNNNCTCC 8 cut(s) 52, 82, 108, 131, 138, 161, 939, 969
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 583, 1085
Bse1I ACTGG 3 cut(s) 189, 956, 1073
BseBI CCWGG 4 cut(s) 220, 654, 847, 1155
BseDI CCNNGG 4 cut(s) 218, 258, 845, 1153
BseGI GGATG 5 cut(s) 346, 431, 496, 799, 843
BseLI CCNNNNNNNGG 3 cut(s) 223, 583, 1085
BseMII CTCAG 2 cut(s) 724, 954
BseNI ACTGG 3 cut(s) 189, 956, 1073
BseRI GAGGAG 8 cut(s) 60, 63, 80, 116, 136, 139, 843, 1301
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 2 cut(s) 559, 986
Bsh1236I CGCG 1 cut(s) 910
BshFI GGCC 4 cut(s) 223, 752, 1024, 1141
BshNI GGYRCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 213
BsiSI CCGG 2 cut(s) 224, 1035
BslFI GGGAC 3 cut(s) 414, 828, 1178
BslI CCNNNNNNNGG 3 cut(s) 223, 583, 1085
BsmAI GTCTC 4 cut(s) 810, 942, 1024, 1059
BsmBI CGTCTC 1 cut(s) 810
BsmFI GGGAC 3 cut(s) 414, 828, 1178
BsmI GAATGC 1 cut(s) 1214
BsnI GGCC 4 cut(s) 223, 752, 1024, 1141
Bso31I GGTCTC 1 cut(s) 1024
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 1 cut(s) 619
BspANI GGCC 4 cut(s) 223, 752, 1024, 1141
BspCNI CTCAG 2 cut(s) 723, 955
BspFNI CGCG 1 cut(s) 910
BspHI TCATGA 3 cut(s) 975, 1092, 1185
BspLI GGNNCC 3 cut(s) 34, 529, 906
BspPI GGATC 1 cut(s) 614
BspT107I GGYRCC 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 1024
BsrI ACTGG 3 cut(s) 189, 956, 1073
BssECI CCNNGG 4 cut(s) 218, 258, 845, 1153
BssMI GATC 1 cut(s) 619
BssNAI GTATAC 1 cut(s) 1255
BssNI GRCGYC 1 cut(s) 1303
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 258
Bst1107I GTATAC 1 cut(s) 1255
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 4 cut(s) 220, 654, 847, 1155
Bst4CI ACNGT 4 cut(s) 394, 583, 1083, 1252
Bst6I CTCTTC 5 cut(s) 47, 134, 818, 894, 1125
BstACI GRCGYC 1 cut(s) 1303
BstBAI YACGTR 1 cut(s) 481
BstC8I GCNNGC 5 cut(s) 288, 346, 577, 747, 1105
BstDEI CTNAG 4 cut(s) 350, 710, 963, 1260
BstF5I GGATG 5 cut(s) 346, 431, 496, 799, 843
BstFNI CGCG 1 cut(s) 910
BstHHI GCGC 1 cut(s) 1125
BstKTI GATC 1 cut(s) 622
BstMAI GTCTC 4 cut(s) 810, 942, 1024, 1059
BstMBI GATC 1 cut(s) 619
BstMWI GCNNNNNNNGC 3 cut(s) 164, 966, 1008
BstNI CCWGG 4 cut(s) 220, 654, 847, 1155
BstSCI CCNGG 5 cut(s) 218, 652, 845, 1033, 1153
BstSFI CTRYAG 1 cut(s) 1248
BstSLI GKGCMC 1 cut(s) 213
BstUI CGCG 1 cut(s) 910
BstV1I GCAGC 2 cut(s) 559, 986
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 1 cut(s) 619
BstYI RGATCY 1 cut(s) 619
BstZ17I GTATAC 1 cut(s) 1255
BsuRI GGCC 4 cut(s) 223, 752, 1024, 1141
BtgZI GCGATG 1 cut(s) 513
BtsCI GGATG 5 cut(s) 346, 431, 496, 799, 843
BtsI GCAGTG 2 cut(s) 139, 734
BtsIMutI CAGTG 5 cut(s) 139, 588, 718, 734, 1088
Cac8I GCNNGC 5 cut(s) 288, 346, 577, 747, 1105
CciI TCATGA 3 cut(s) 975, 1092, 1185
CfoI GCGC 1 cut(s) 1125
Cfr13I GGNCC 3 cut(s) 905, 1022, 1140
CseI GACGC 1 cut(s) 1292
Csp6I GTAC 2 cut(s) 478, 1136
CviAII CATG 6 cut(s) 325, 790, 976, 1093, 1176, 1186
CviQI GTAC 2 cut(s) 478, 1136
DdeI CTNAG 4 cut(s) 350, 710, 963, 1260
DpnI GATC 1 cut(s) 621
DpnII GATC 1 cut(s) 619
DraIII CACNNNGTG 1 cut(s) 1085
EaeI YGGCCR 2 cut(s) 221, 750
Eam1104I CTCTTC 5 cut(s) 47, 134, 818, 894, 1125
EarI CTCTTC 5 cut(s) 47, 134, 818, 894, 1125
EciI GGCGGA 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 1024
Eco47I GGWCC 1 cut(s) 905
Eco57I CTGAAG 4 cut(s) 272, 585, 1235, 1257
EcoRI GAATTC 1 cut(s) 454
EcoRII CCWGG 4 cut(s) 218, 652, 845, 1153
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 810
FaeI CATG 6 cut(s) 328, 793, 979, 1096, 1179, 1189
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 3 cut(s) 414, 828, 1178
FatI CATG 6 cut(s) 324, 789, 975, 1092, 1175, 1185
FauI CCCGC 2 cut(s) 143, 584
FblI GTMKAC 2 cut(s) 243, 1254
Fnu4HI GCNGC 8 cut(s) 156, 159, 281, 284, 570, 573, 750, 1000
FokI GGATG 5 cut(s) 353, 438, 503, 806, 850
Fsp4HI GCNGC 8 cut(s) 156, 159, 281, 284, 570, 573, 750, 1000
FspBI CTAG 4 cut(s) 617, 887, 987, 1312
GlaI GCGC 1 cut(s) 1124
GluI GCNGC 8 cut(s) 156, 159, 281, 284, 570, 573, 750, 1000
GsuI CTGGAG 1 cut(s) 1176
HaeIII GGCC 4 cut(s) 223, 752, 1024, 1141
HapII CCGG 2 cut(s) 224, 1035
HgaI GACGC 1 cut(s) 1292
HhaI GCGC 1 cut(s) 1125
Hin1I GRCGYC 1 cut(s) 1303
Hin1II CATG 6 cut(s) 328, 793, 979, 1096, 1179, 1189
Hin6I GCGC 1 cut(s) 1123
HinP1I GCGC 1 cut(s) 1123
HincII GTYRAC 2 cut(s) 244, 727
HindII GTYRAC 2 cut(s) 244, 727
HinfI GANTC 2 cut(s) 328, 560
HpaII CCGG 2 cut(s) 224, 1035
HphI GGTGA 2 cut(s) 175, 938
Hpy166II GTNNAC 5 cut(s) 211, 244, 727, 1229, 1255
Hpy188I TCNGA 4 cut(s) 565, 765, 861, 964
Hpy188III TCNNGA 6 cut(s) 362, 459, 887, 976, 1093, 1186
Hpy8I GTNNAC 5 cut(s) 211, 244, 727, 1229, 1255
Hpy99I CGWCG 3 cut(s) 176, 245, 248
HpyAV CCTTC 6 cut(s) 93, 115, 190, 331, 488, 1232
HpyCH4III ACNGT 4 cut(s) 394, 583, 1083, 1252
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 8 cut(s) 211, 516, 614, 680, 852, 969, 1011, 1103
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 966, 1008
HpyF3I CTNAG 4 cut(s) 350, 710, 963, 1260
HpySE526I ACGT 1 cut(s) 480
Hsp92I GRCGYC 1 cut(s) 1303
Hsp92II CATG 6 cut(s) 328, 793, 979, 1096, 1179, 1189
HspAI GCGC 1 cut(s) 1123
Kzo9I GATC 1 cut(s) 619
LmnI GCTCC 2 cut(s) 149, 1288
Lsp1109I GCAGC 2 cut(s) 559, 986
LweI GCATC 1 cut(s) 331
MaeI CTAG 4 cut(s) 617, 887, 987, 1312
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 4 cut(s) 305, 362, 533, 732
MalI GATC 1 cut(s) 621
MboI GATC 1 cut(s) 619
MflI RGATCY 1 cut(s) 619
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 8 cut(s) 454, 853, 970, 991, 1096, 1114, 1180, 1189
MseI TTAA 2 cut(s) 555, 602
MspA1I CMGCKG 2 cut(s) 572, 722
MspI CCGG 2 cut(s) 224, 1035
MspR9I CCNGG 5 cut(s) 220, 654, 847, 1035, 1155
Mva1269I GAATGC 1 cut(s) 1214
MvaI CCWGG 4 cut(s) 220, 654, 847, 1155
MvnI CGCG 1 cut(s) 910
MwoI GCNNNNNNNGC 3 cut(s) 164, 966, 1008
NciI CCSGG 1 cut(s) 1035
NdeII GATC 1 cut(s) 619
NlaIII CATG 6 cut(s) 328, 793, 979, 1096, 1179, 1189
NlaIV GGNNCC 3 cut(s) 34, 529, 906
NmuCI GTSAC 4 cut(s) 305, 362, 533, 732
PagI TCATGA 3 cut(s) 975, 1092, 1185
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PctI GAATGC 1 cut(s) 1214
PfeI GAWTC 2 cut(s) 328, 560
PflFI GACNNNGTC 1 cut(s) 953
PflMI CCANNNNNTGG 1 cut(s) 1085
PkrI GCNGC 8 cut(s) 157, 160, 282, 285, 571, 574, 751, 1001
Ppu21I YACGTR 1 cut(s) 481
PshBI ATTAAT 1 cut(s) 602
Psp6I CCWGG 4 cut(s) 218, 652, 845, 1153
PspGI CCWGG 4 cut(s) 218, 652, 845, 1153
PspN4I GGNNCC 3 cut(s) 34, 529, 906
PspPI GGNCC 3 cut(s) 905, 1022, 1140
PsuI RGATCY 1 cut(s) 619
PsyI GACNNNGTC 1 cut(s) 953
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 2 cut(s) 479, 1137
RsaNI GTAC 2 cut(s) 478, 1136
SalI GTCGAC 1 cut(s) 242
SaqAI TTAA 2 cut(s) 555, 602
SatI GCNGC 8 cut(s) 156, 159, 281, 284, 570, 573, 750, 1000
Sau3AI GATC 1 cut(s) 619
Sau96I GGNCC 3 cut(s) 905, 1022, 1140
ScrFI CCNGG 5 cut(s) 220, 654, 847, 1035, 1155
SduI GDGCHC 1 cut(s) 213
SfaNI GCATC 1 cut(s) 331
SfcI CTRYAG 1 cut(s) 1248
SgrDI CGTCGACG 1 cut(s) 242
SinI GGWCC 1 cut(s) 905
SmlI CTYRAG 1 cut(s) 1017
SmoI CTYRAG 1 cut(s) 1017
Sse9I AATT 8 cut(s) 454, 853, 970, 991, 1096, 1114, 1180, 1189
SspI AATATT 1 cut(s) 600
SspMI CTAG 4 cut(s) 617, 887, 987, 1312
StyD4I CCNGG 5 cut(s) 218, 652, 845, 1033, 1153
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 4 cut(s) 394, 583, 1083, 1252
TaiI ACGT 1 cut(s) 483
TaqI TCGA 2 cut(s) 174, 243
TasI AATT 8 cut(s) 454, 853, 970, 991, 1096, 1114, 1180, 1189
TauI GCSGC 6 cut(s) 158, 161, 283, 286, 572, 752
TfiI GAWTC 2 cut(s) 328, 560
Tru1I TTAA 2 cut(s) 555, 602
Tru9I TTAA 2 cut(s) 555, 602
TscAI CASTG 5 cut(s) 146, 588, 718, 741, 1088
TseFI GTSAC 4 cut(s) 305, 362, 533, 732
TseI GCWGC 2 cut(s) 572, 999
Tsp45I GTSAC 4 cut(s) 305, 362, 533, 732
TspGWI ACGGA 2 cut(s) 160, 335
TspRI CASTG 5 cut(s) 146, 588, 718, 741, 1088
Tth111I GACNNNGTC 1 cut(s) 953
Van91I CCANNNNNTGG 1 cut(s) 1085
VneI GTGCAC 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 905
VspI ATTAAT 1 cut(s) 602
XapI RAATTY 3 cut(s) 454, 991, 1096
XbaI TCTAGA 1 cut(s) 886
XmiI GTMKAC 2 cut(s) 243, 1254
XspI CTAG 4 cut(s) 617, 887, 987, 1312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.