Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8220688.1

Orthogroup ID

OG0006886

Physical Location & Seq

Genomic Coordinates Reverse (-)

123 .. 506

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8220688.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgtcctctgcttccaagttcattcgcttcggcaccgccctcttccattttcccaaaccaactctctctcctcctccctctccttccctcctccctctcaaacccttcgccacctcacaatctctcctcttctcccgccactgctcctcctccgccgcagtcgcctccgtcgataccttcaccgccagtggcaccgaagcccccgtgcaccacccctggccggagtgggtggctttcgtcgacgggctgaagaccaagggctacttcatcaaaccgccgccgcctgcggaggacggcgagagtgacggcgtttatacggacatgaatcagttgaaggatgcttgccttagctttgctcgtgaccgctttgatgttttcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03022 ko05202 map03022 map05202

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

127

Amino Acids

13.86

Weight (kDa)

6.89

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48570
fragaria_vesca	FvH4_5g17400 FvH4_5g17400 FvH4_5g17400 FvH4_5g17400
malus_domestica	MD06G1227200.v1.1 MD14G1236700.v1.1
prunus_persica	Prupe.5G233800_v2.0.a1 Prupe.5G233800_v2.0.a1
pyrus_communis	pycom06g20370 pycom14g19770
rosa_chinensis	RchiOBHm_Chr7g0178341
rosa_laevigata	RLG00000005454
rosa_multiflora	Rmu_co8220688.1_g000001 Rmu_sc0014842.1_g000010 Rmu_sc0028437.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229690 Rroxscaffold_3G00275000
rosa_rugosa	Rorug06G0416100
rosa_samantha	Rh7AG014900 Rh7BG014400 Rh7CG014400 Rh7CG435500 Rh7DG014700
rosa_wichuraiana	Rw0G010220 Rw7G001180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	32, 191
AccI	GTMKAC	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	2 cut(s)	334, 379
AjnI	CCWGG	1 cut(s)	215
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AluBI	AGCT	1 cut(s)	351
AluI	AGCT	1 cut(s)	351
Alw21I	GWGCWC	1 cut(s)	210
Alw44I	GTGCAC	1 cut(s)	206
AoxI	GGCC	1 cut(s)	218
ApaLI	GTGCAC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	210
BanI	GGYRCC	2 cut(s)	32, 191
BauI	CACGAG	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	210
BceAI	ACGGC	2 cut(s)	310, 322
BciT130I	CCWGG	1 cut(s)	217
BisI	GCNGC	3 cut(s)	156, 278, 281
BlsI	GCNGC	3 cut(s)	157, 279, 282
Bme1390I	CCNGG	1 cut(s)	217
BmiI	GGNNCC	2 cut(s)	34, 193
BmrFI	CCNGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	215, 255
BsaXI	ACNNNNNCTCC	6 cut(s)	52, 82, 108, 131, 138, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	2 cut(s)	215, 255
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	6 cut(s)	60, 63, 80, 116, 136, 139
BseSI	GKGCMC	1 cut(s)	210
BshFI	GGCC	1 cut(s)	220
BshNI	GGYRCC	2 cut(s)	32, 191
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	220
BsnI	GGCC	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	34, 193
BspT107I	GGYRCC	2 cut(s)	32, 191
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	2 cut(s)	215, 255
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	217
Bst6I	CTCTTC	2 cut(s)	47, 134
BstC8I	GCNNGC	2 cut(s)	285, 343
BstDEI	CTNAG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	215
BstSLI	GKGCMC	1 cut(s)	210
BstV2I	GAAGAC	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	2 cut(s)	139, 193
Cac8I	GCNNGC	2 cut(s)	285, 343
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	6 cut(s)	200, 220, 233, 247, 261, 351
CviKI_1	RGCY	6 cut(s)	200, 220, 233, 247, 261, 351
DdeI	CTNAG	1 cut(s)	347
EaeI	YGGCCR	1 cut(s)	218
Eam1104I	CTCTTC	2 cut(s)	47, 134
EarI	CTCTTC	2 cut(s)	47, 134
EciI	GGCGGA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	1 cut(s)	325
FaiI	YATR	2 cut(s)	315, 323
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FatI	CATG	1 cut(s)	321
FauI	CCCGC	1 cut(s)	143
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	3 cut(s)	156, 278, 281
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	3 cut(s)	156, 278, 281
GluI	GCNGC	3 cut(s)	156, 278, 281
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	1 cut(s)	325
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	2 cut(s)	208, 241
Hpy188III	TCNNGA	1 cut(s)	359
Hpy8I	GTNNAC	2 cut(s)	208, 241
Hpy99I	CGWCG	3 cut(s)	173, 242, 245
HpyAV	CCTTC	4 cut(s)	93, 115, 187, 328
HpyCH4V	TGCA	1 cut(s)	208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	1 cut(s)	347
Hsp92II	CATG	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	5 cut(s)	199, 202, 229, 234, 297
LweI	GCATC	1 cut(s)	328
MaeIII	GTNAC	2 cut(s)	302, 359
MboII	GAAGA	3 cut(s)	34, 121, 262
MhlI	GDGCHC	1 cut(s)	210
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	217
MwoI	GCNNNNNNNGC	1 cut(s)	161
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	2 cut(s)	34, 193
NmuCI	GTSAC	2 cut(s)	302, 359
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	3 cut(s)	157, 279, 282
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	34, 193
SalI	GTCGAC	1 cut(s)	239
SatI	GCNGC	3 cut(s)	156, 278, 281
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	3 cut(s)	116, 179, 353
SfaNI	GCATC	1 cut(s)	328
SgrDI	CGTCGACG	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	215
StyI	CCWWGG	1 cut(s)	255
TaqI	TCGA	2 cut(s)	171, 240
TauI	GCSGC	3 cut(s)	158, 280, 283
TfiI	GAWTC	1 cut(s)	325
TscAI	CASTG	2 cut(s)	146, 193
TseFI	GTSAC	2 cut(s)	302, 359
Tsp45I	GTSAC	2 cut(s)	302, 359
TspDTI	ATGAA	3 cut(s)	10, 256, 338
TspGWI	ACGGA	2 cut(s)	157, 332
TspRI	CASTG	2 cut(s)	146, 193
VneI	GTGCAC	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.