Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006886

Physical Location & Seq

Genomic Coordinates Forward (+)

17757414 .. 17761670

Gene Structure 4257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G233800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGTCAGCTGCTTCAAAGCTCATACGCTTTGGAACCGCAGCACTGTTCCATGCTCCCATAAGAACTATATCTGCGACCCCTTCACTTTGTTCTCTCAAACCCTTCGCTGCCTCACAATCTCTGCGCTTCCCCAGGTACAGCTCTTCCTCCGCTGCAATTGAAACTATTGATAGCGTCACCGCTAACAGCACAGAAGCACCGCTGCTCCATCCCTGGCCCGAGTGGGTGGCTTTTATCGACCGCTTGAAGACCAAAGGTTACTTCACCGGAACCCAGCCGAGCGAGAGTGACGATGTTTACACGGACATGACTCAAATAAAGGATGCGTGCCTCAGCTTTGCTCGTGACCGCTACGATGTTTTCAAATCACTGTCTACGGAAGATATGCAAGCAGTTGTGGAGGGTGGATGCCCCAATCTTTTCCGGAAAGCTGTGAATTCAGCAAAAAGATTGAGATTCTATCTGAGACTAGATGAAGGGGATGTTTGTGGTGCTTGCAATCTGCGGGGTTCCTGTGATAGAGCGTATGTGGTTCTTAAGGAATCTGAAGCTGCGGCACGGACAGTGGATATAGTCCGAATACTATTGTTTCATGCTCTGGATCCACTTGTTATTTCTGGGGGGGAGAAACCTCTTGGTAGAGACCTTCTAGAAACATCTGCAAGGAAACTGCTTTCTGAGTTGCTTCAACTCAGTGAAACAGCTGTTGACCCATCACTTCCAAAGCCTGCTGCCAAAGCTGAGAAAAAGTTATCTGCAAGTATCATTGATGATGGACTATCTCAAACTGTTGAAATGAAGAGAGGAGATTGGATGTGTCCCAAATGCAATTTTATGAACTTTGCTAAAAATATAAGATGCCTACAATGTAAAGAAGATGGCCCAAAAAAAGCTGATGCGGGTGATCTTGAAATGAAAAAGGGAGACTGGATCTGCACTGAATGCAATTTCATGAACTTCTCTAGAAATATACGCTGCCTAAAGTGCAAAGCTGAAGGGCCAAAGAGAGTCAGTACAGATGCTGTTGAAATGAAGAAAGGAGACTGGAACTGCCCAAAGTGCGCTTTCATGAATTTTGCAAGCAATAGGAAGTGTTTGCGTTGTCAAGAGACACGGCCCAAGAAAAATCCTACAGATTGGGACTGTCCCTCATGTAATTTCTTGAATTATGGTAGAAACACAGTCTGCCTGAAATGTAACTGTAAATGCCCCAAGGAAGCAACTACTAGTGAGTACGAGGAGCAGATGTGGAGGCACCCACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03022 ko05202 map03022 map05202

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

422

Amino Acids

47.12

Weight (kDa)

8.7

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48570
fragaria_vesca	FvH4_5g17400 FvH4_5g17400 FvH4_5g17400 FvH4_5g17400
malus_domestica	MD06G1227200.v1.1 MD14G1236700.v1.1
prunus_persica	Prupe.5G233800_v2.0.a1 Prupe.5G233800_v2.0.a1
pyrus_communis	pycom06g20370 pycom14g19770
rosa_chinensis	RchiOBHm_Chr7g0178341
rosa_laevigata	RLG00000005454
rosa_multiflora	Rmu_co8220688.1_g000001 Rmu_sc0014842.1_g000010 Rmu_sc0028437.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229690 Rroxscaffold_3G00275000
rosa_rugosa	Rorug06G0416100
rosa_samantha	Rh7AG014900 Rh7BG014400 Rh7CG014400 Rh7CG435500 Rh7DG014700
rosa_wichuraiana	Rw0G010220 Rw7G001180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1254
AccI	GTMKAC	1 cut(s)	374
AccIII	TCCGGA	1 cut(s)	423
AciI	CCGC	9 cut(s)	36, 150, 180, 200, 241, 349, 505, 554, 899
AclWI	GGATC	3 cut(s)	596, 609, 938
AcsI	RAATTY	2 cut(s)	436, 1072
AcuI	CTGAAG	2 cut(s)	567, 1014
AfaI	GTAC	3 cut(s)	137, 1015, 1235
AflII	CTTAAG	1 cut(s)	536
AgsI	TTSAA	9 cut(s)	15, 161, 247, 364, 689, 794, 911, 1028, 1165
AhlI	ACTAGT	1 cut(s)	1226
AjnI	CCWGG	2 cut(s)	131, 212
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
Alw26I	GTCTC	5 cut(s)	460, 636, 918, 1035, 1103
AlwI	GGATC	3 cut(s)	596, 609, 938
AlwNI	CAGNNNCTG	1 cut(s)	1022
Ama87I	CYCGRG	1 cut(s)	218
Aor13HI	TCCGGA	1 cut(s)	423
AoxI	GGCC	4 cut(s)	215, 880, 998, 1115
ApeKI	GCWGC	8 cut(s)	8, 38, 107, 152, 202, 551, 731, 975
ApoI	RAATTY	2 cut(s)	436, 1072
AspLEI	GCGC	2 cut(s)	126, 1064
AspS9I	GGNCC	4 cut(s)	216, 881, 998, 1116
AsuHPI	GGTGA	3 cut(s)	169, 256, 914
AvaI	CYCGRG	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	601
BanI	GGYRCC	1 cut(s)	1254
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	254
BbvCI	CCTCAGC	1 cut(s)	332
BbvI	GCAGC	7 cut(s)	50, 94, 139, 189, 538, 718, 962
BccI	CCATC	4 cut(s)	216, 721, 767, 872
BceAI	ACGGC	1 cut(s)	1130
BciT130I	CCWGG	2 cut(s)	133, 214
BcoDI	GTCTC	5 cut(s)	460, 636, 918, 1035, 1103
BcuI	ACTAGT	1 cut(s)	1226
BfaI	CTAG	5 cut(s)	470, 650, 963, 1227, 1264
BfmI	CTRYAG	1 cut(s)	1131
BfrI	CTTAAG	1 cut(s)	536
BisI	GCNGC	9 cut(s)	9, 39, 108, 153, 203, 552, 555, 732, 976
BlsI	GCNGC	9 cut(s)	10, 40, 109, 154, 204, 553, 556, 733, 977
Bme1390I	CCNGG	2 cut(s)	133, 214
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	4 cut(s)	216, 881, 998, 1116
BmiI	GGNNCC	5 cut(s)	34, 271, 511, 603, 1256
BmrFI	CCNGG	2 cut(s)	133, 214
BmsI	GCATC	5 cut(s)	313, 398, 848, 886, 1009
BpiI	GAAGAC	1 cut(s)	254
Bpu10I	CCTNAGC	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	636
BsaJI	CCNNGG	3 cut(s)	131, 212, 1212
BsaWI	WCCGGW	2 cut(s)	266, 423
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 219, 1232, 1262
Bse1I	ACTGG	2 cut(s)	932, 1049
BseAI	TCCGGA	1 cut(s)	423
BseBI	CCWGG	2 cut(s)	133, 214
BseDI	CCNNGG	3 cut(s)	131, 212, 1212
BseGI	GGATG	5 cut(s)	208, 328, 413, 487, 819
BseMII	CTCAG	5 cut(s)	346, 455, 669, 706, 732
BseNI	ACTGG	2 cut(s)	932, 1049
BseRI	GAGGAG	2 cut(s)	819, 1253
BseXI	GCAGC	7 cut(s)	50, 94, 139, 189, 538, 718, 962
BseYI	CCCAGC	1 cut(s)	273
BsgI	GTGCAG	1 cut(s)	919
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	4 cut(s)	217, 882, 1000, 1117
BshNI	GGYRCC	1 cut(s)	1254
BsiEI	CGRYCG	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	2 cut(s)	267, 424
BslFI	GGGAC	3 cut(s)	804, 1131, 1154
BsmAI	GTCTC	5 cut(s)	460, 636, 918, 1035, 1103
BsmFI	GGGAC	3 cut(s)	804, 1131, 1154
BsmI	GAATGC	1 cut(s)	947
BsnI	GGCC	4 cut(s)	217, 882, 1000, 1117
Bso31I	GGTCTC	1 cut(s)	636
BsoBI	CYCGRG	1 cut(s)	218
Bsp13I	TCCGGA	1 cut(s)	423
Bsp143I	GATC	3 cut(s)	601, 904, 930
BspACI	CCGC	9 cut(s)	36, 150, 180, 200, 241, 349, 505, 554, 899
BspANI	GGCC	4 cut(s)	217, 882, 1000, 1117
BspCNI	CTCAG	5 cut(s)	345, 456, 670, 705, 733
BspEI	TCCGGA	1 cut(s)	423
BspHI	TCATGA	2 cut(s)	951, 1068
BspLI	GGNNCC	5 cut(s)	34, 271, 511, 603, 1256
BspPI	GGATC	3 cut(s)	596, 609, 938
BspQI	GCTCTTC	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	1254
BspTI	CTTAAG	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	636
BsrI	ACTGG	2 cut(s)	932, 1049
BssECI	CCNNGG	3 cut(s)	131, 212, 1212
BssMI	GATC	3 cut(s)	601, 904, 930
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	1212
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	2 cut(s)	133, 214
Bst4CI	ACNGT	7 cut(s)	45, 372, 565, 790, 1145, 1183, 1202
Bst6I	CTCTTC	2 cut(s)	148, 794
BstAFI	CTTAAG	1 cut(s)	536
BstAPI	GCANNNNNTGC	1 cut(s)	942
BstC8I	GCNNGC	5 cut(s)	328, 390, 496, 729, 1081
BstDEI	CTNAG	5 cut(s)	332, 464, 678, 692, 741
BstF5I	GGATG	5 cut(s)	208, 328, 413, 487, 819
BstHHI	GCGC	2 cut(s)	126, 1064
BstKTI	GATC	3 cut(s)	604, 907, 933
BstMAI	GTCTC	5 cut(s)	460, 636, 918, 1035, 1103
BstMBI	GATC	3 cut(s)	601, 904, 930
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	4 cut(s)	737, 942, 984, 1059
BstNI	CCWGG	2 cut(s)	133, 214
BstSCI	CCNGG	2 cut(s)	131, 212
BstSFI	CTRYAG	1 cut(s)	1131
BstV1I	GCAGC	7 cut(s)	50, 94, 139, 189, 538, 718, 962
BstV2I	GAAGAC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	601, 930
BstYI	RGATCY	2 cut(s)	601, 930
BsuRI	GGCC	4 cut(s)	217, 882, 1000, 1117
BtsCI	GGATG	5 cut(s)	208, 328, 413, 487, 819
BtsIMutI	CAGTG	5 cut(s)	41, 368, 570, 700, 936
Cac8I	GCNNGC	5 cut(s)	328, 390, 496, 729, 1081
CaiI	CAGNNNCTG	1 cut(s)	1022
CciI	TCATGA	2 cut(s)	951, 1068
CfoI	GCGC	2 cut(s)	126, 1064
Cfr13I	GGNCC	4 cut(s)	216, 881, 998, 1116
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	3 cut(s)	136, 1014, 1234
CviAII	CATG	6 cut(s)	50, 307, 593, 952, 1069, 1152
CviQI	GTAC	3 cut(s)	136, 1014, 1234
DdeI	CTNAG	5 cut(s)	332, 464, 678, 692, 741
DpnI	GATC	3 cut(s)	603, 906, 932
DpnII	GATC	3 cut(s)	601, 904, 930
Eam1104I	CTCTTC	2 cut(s)	148, 794
EarI	CTCTTC	2 cut(s)	148, 794
Eco130I	CCWWGG	1 cut(s)	1212
Eco31I	GGTCTC	1 cut(s)	636
Eco57I	CTGAAG	2 cut(s)	567, 1014
Eco88I	CYCGRG	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	436
EcoRII	CCWGG	2 cut(s)	131, 212
EcoT14I	CCWWGG	1 cut(s)	1212
ErhI	CCWWGG	1 cut(s)	1212
FaeI	CATG	6 cut(s)	53, 310, 596, 955, 1072, 1155
FaqI	GGGAC	3 cut(s)	804, 1131, 1154
FatI	CATG	6 cut(s)	49, 306, 592, 951, 1068, 1151
FauI	CCCGC	2 cut(s)	498, 892
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	9 cut(s)	9, 39, 108, 153, 203, 552, 555, 732, 976
FokI	GGATG	5 cut(s)	195, 335, 420, 494, 826
Fsp4HI	GCNGC	9 cut(s)	9, 39, 108, 153, 203, 552, 555, 732, 976
FspBI	CTAG	5 cut(s)	470, 650, 963, 1227, 1264
GlaI	GCGC	2 cut(s)	125, 1063
GluI	GCNGC	9 cut(s)	9, 39, 108, 153, 203, 552, 555, 732, 976
GsaI	CCCAGC	1 cut(s)	277
HaeIII	GGCC	4 cut(s)	217, 882, 1000, 1117
HapII	CCGG	2 cut(s)	267, 424
HgaI	GACGC	1 cut(s)	163
HhaI	GCGC	2 cut(s)	126, 1064
Hin1II	CATG	6 cut(s)	53, 310, 596, 955, 1072, 1155
Hin6I	GCGC	2 cut(s)	124, 1062
HinP1I	GCGC	2 cut(s)	124, 1062
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HinfI	GANTC	4 cut(s)	310, 456, 542, 1008
HpaII	CCGG	2 cut(s)	267, 424
HphI	GGTGA	3 cut(s)	169, 256, 914
Hpy166II	GTNNAC	3 cut(s)	298, 375, 709
Hpy188I	TCNGA	4 cut(s)	465, 547, 578, 679
Hpy8I	GTNNAC	3 cut(s)	298, 375, 709
HpyAV	CCTTC	5 cut(s)	90, 112, 470, 656, 989
HpyCH4III	ACNGT	7 cut(s)	45, 372, 565, 790, 1145, 1183, 1202
HpyF10VI	GCNNNNNNNGC	4 cut(s)	737, 942, 984, 1059
HpyF3I	CTNAG	5 cut(s)	332, 464, 678, 692, 741
Hsp92II	CATG	6 cut(s)	53, 310, 596, 955, 1072, 1155
HspAI	GCGC	2 cut(s)	124, 1062
Kpn2I	TCCGGA	1 cut(s)	423
Kzo9I	GATC	3 cut(s)	601, 904, 930
LguI	GCTCTTC	1 cut(s)	148
LmnI	GCTCC	3 cut(s)	58, 210, 1240
Lsp1109I	GCAGC	7 cut(s)	50, 94, 139, 189, 538, 718, 962
LweI	GCATC	5 cut(s)	313, 398, 848, 886, 1009
MaeI	CTAG	5 cut(s)	470, 650, 963, 1227, 1264
MaeIII	GTNAC	5 cut(s)	175, 257, 287, 344, 1196
MalI	GATC	3 cut(s)	603, 906, 932
MboI	GATC	3 cut(s)	601, 904, 930
MboII	GAAGA	6 cut(s)	135, 259, 392, 811, 887, 1045
MfeI	CAATTG	1 cut(s)	156
MflI	RGATCY	2 cut(s)	601, 930
MluCI	AATT	7 cut(s)	156, 436, 829, 946, 1072, 1156, 1165
MlyI	GAGTC	2 cut(s)	304, 1017
MnlI	CCTC	9 cut(s)	121, 157, 341, 394, 642, 797, 1159, 1231, 1245
MroI	TCCGGA	1 cut(s)	423
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	4 cut(s)	8, 152, 202, 704
MspCI	CTTAAG	1 cut(s)	536
MspI	CCGG	2 cut(s)	267, 424
MspR9I	CCNGG	2 cut(s)	133, 214
MunI	CAATTG	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	947
MvaI	CCWGG	2 cut(s)	133, 214
MwoI	GCNNNNNNNGC	4 cut(s)	737, 942, 984, 1059
NdeII	GATC	3 cut(s)	601, 904, 930
NlaIII	CATG	6 cut(s)	53, 310, 596, 955, 1072, 1155
NlaIV	GGNNCC	5 cut(s)	34, 271, 511, 603, 1256
NmeAIII	GCCGAG	1 cut(s)	303
NmuCI	GTSAC	3 cut(s)	175, 287, 344
PagI	TCATGA	2 cut(s)	951, 1068
PciSI	GCTCTTC	1 cut(s)	148
PctI	GAATGC	1 cut(s)	947
PfeI	GAWTC	2 cut(s)	456, 542
PkrI	GCNGC	9 cut(s)	10, 40, 109, 154, 204, 553, 556, 733, 977
PleI	GAGTC	2 cut(s)	304, 1016
PpsI	GAGTC	2 cut(s)	304, 1016
Psp6I	CCWGG	2 cut(s)	131, 212
PspFI	CCCAGC	1 cut(s)	273
PspGI	CCWGG	2 cut(s)	131, 212
PspN4I	GGNNCC	5 cut(s)	34, 271, 511, 603, 1256
PspPI	GGNCC	4 cut(s)	216, 881, 998, 1116
PstNI	CAGNNNCTG	1 cut(s)	1022
PsuI	RGATCY	2 cut(s)	601, 930
PvuII	CAGCTG	2 cut(s)	8, 704
RsaI	GTAC	3 cut(s)	137, 1015, 1235
RsaNI	GTAC	3 cut(s)	136, 1014, 1234
RseI	CAYNNNNRTG	1 cut(s)	305
SapI	GCTCTTC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	9 cut(s)	9, 39, 108, 153, 203, 552, 555, 732, 976
Sau3AI	GATC	3 cut(s)	601, 904, 930
Sau96I	GGNCC	4 cut(s)	216, 881, 998, 1116
SchI	GAGTC	2 cut(s)	304, 1017
ScrFI	CCNGG	2 cut(s)	133, 214
SfaNI	GCATC	5 cut(s)	313, 398, 848, 886, 1009
SfcI	CTRYAG	1 cut(s)	1131
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
SpeI	ACTAGT	1 cut(s)	1226
Sse9I	AATT	7 cut(s)	156, 436, 829, 946, 1072, 1156, 1165
SsiI	CCGC	9 cut(s)	36, 150, 180, 200, 241, 349, 505, 554, 899
SspMI	CTAG	5 cut(s)	470, 650, 963, 1227, 1264
StyD4I	CCNGG	2 cut(s)	131, 212
StyI	CCWWGG	1 cut(s)	1212
TaaI	ACNGT	7 cut(s)	45, 372, 565, 790, 1145, 1183, 1202
TaqI	TCGA	1 cut(s)	237
TasI	AATT	7 cut(s)	156, 436, 829, 946, 1072, 1156, 1165
TatI	WGTACW	1 cut(s)	1013
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	2 cut(s)	456, 542
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	5 cut(s)	48, 375, 570, 700, 943
TseFI	GTSAC	3 cut(s)	175, 287, 344
TseI	GCWGC	8 cut(s)	8, 38, 107, 152, 202, 551, 731, 975
Tsp45I	GTSAC	3 cut(s)	175, 287, 344
TspGWI	ACGGA	3 cut(s)	317, 392, 574
TspRI	CASTG	5 cut(s)	48, 375, 570, 700, 943
Vha464I	CTTAAG	1 cut(s)	536
XapI	RAATTY	2 cut(s)	436, 1072
XbaI	TCTAGA	2 cut(s)	649, 962
XmiI	GTMKAC	1 cut(s)	374
XspI	CTAG	5 cut(s)	470, 650, 963, 1227, 1264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.