RchiOBHm_Chr7g0178341

Zinc finger protein VAR3

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
1040131 .. 1043643
3513 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15893

Sequence Viewer

Length: 1317 bp
ATGTCCTCTGCTTCCAAGTTCATTCGCTTCGGCACCGCCCTCTTCCATTTTCCCAAACCAACTCTCTCTCCTCCTCCCTCTCCTTCCCTCCTCCCTCTCAAACCCTTCGCCACCTCACAATCTCTCCTCTTCTCCCGCCACTGCTCCTCCTCCTCCTCCGCCGCAGTCGCCTCCGTCGATACCTTCACCGCCAGTGGCACCGAAGCCCCTGTGCACCACCCCTGGCCGGAGTGGGTGGCTTTCGTCGACGGGCTGAAGACCAAGGGCTACTTCATCAAACCGCCGCCGCCTGCGGAGGACGGCGAGAGTGACGGCGTTTATACGGACATGAATCAGTTGAAGGATGCTTGCCTTAGCTTTGCTCGTGACCGCTTTGATGTTTTCAAATCATTGTCTGTGGCAGACATTCAAGCACTTGTGGAGGGTGGATGTCCCAATCTGTTGCGAAAAGCTGTGAATTCAGGAAAGCGATTGAGATTGTACGTGAAGCTGGATGAAGGCGATGTTTGTGGTGGTTGCAATCTGCGAGGTTCCTGTGACAGAGCTTATGTTGTTCTTAACGAATCTGAAGCCGCTGCCCGCACAGTGGATATAGTGCGAATATTAATGTATTATGCACTAGATCCACTCGTTATTTCTGGGCAAGAGAAACCTCCTGGTAGAGAGCTTATAGAAACATCTGCAAGAAAACTGCTGTCCAAGTTGCTTCAACTCAGTGAAACAGCTGTTGACCCATCACTGCCAATGCCTGCGGCCAAAGTTCTTACGAAGAAAAAACCATCTGTAAGTTTCATGGATGATGAGCCGTCTCAAACTGCTGAAATGAAGAGAGGAGATTGGATGTGTCCCAGGTGCAATTTTCTGAACTTTGCTAAAAATATAAGATGTCTAGAGTGTAAAGAAGAGGGCCCGCGAAAAGTTGATATGGGTGATGTTGAAATGAAAAAAGGAGACTGGGTCTGCTCTGAGTGCAATTTCATGAACTTCGCTAGAAATTTTCGCTGCCTAAAGTGCAAAACTCAAGGGCCAAAGAGACCCGGTGTAGATGATGTCAAAATGAAGAAAGGAGACTGGAACTGCCCACAGTGTGGGTTCATGAATTTTGCAAGCAAAAGGAATTGTTTGCGCTGTGAAGAGGTACGGCCCAAGATAAACCCTGGAGATTGGGACTGTCCCTCATGTAATTTCATGAATTATGGGAGAAACACAGAATGCCTGAAGTGTAAATGTGAACGCCCTGAAGGAGAAACTACAGTATACCCTAAGAAGAAACTACATACCGAATATGAGGAGCAAATATGGAGGCGTCCTCGCTAG

Protein Analysis

438

Amino Acids

49.11

Weight (kDa)

8.71

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 315 - 342 4.9e-07 Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP PF00641 354 - 382 6.6e-08 Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP PF00641 387 - 413 1.5e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 32, 197
AccB7I CCANNNNNTGG 1 cut(s) 1088
AccI GTMKAC 2 cut(s) 246, 1257
AccII CGCG 1 cut(s) 913
AclWI GGATC 1 cut(s) 617
AcoI YGGCCR 2 cut(s) 224, 753
AcsI RAATTY 3 cut(s) 457, 994, 1099
AcuI CTGAAG 4 cut(s) 275, 588, 1238, 1260
AcyI GRCGYC 1 cut(s) 1306
AdeI CACNNNGTG 1 cut(s) 1088
AfaI GTAC 2 cut(s) 482, 1140
AfiI CCNNNNNNNGG 3 cut(s) 226, 586, 1088
AgsI TTSAA 5 cut(s) 340, 385, 410, 710, 938
AjnI CCWGG 4 cut(s) 221, 655, 848, 1156
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 6 cut(s) 357, 452, 490, 545, 667, 725
AluI AGCT 6 cut(s) 357, 452, 490, 545, 667, 725
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 4 cut(s) 813, 945, 1027, 1062
Alw44I GTGCAC 1 cut(s) 212
AlwI GGATC 1 cut(s) 617
AoxI GGCC 5 cut(s) 224, 753, 907, 1025, 1142
ApaI GGGCCC 1 cut(s) 911
ApaLI GTGCAC 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 575, 1002
ApoI RAATTY 3 cut(s) 457, 994, 1099
AseI ATTAAT 1 cut(s) 605
AspLEI GCGC 1 cut(s) 1128
AspS9I GGNCC 4 cut(s) 907, 908, 1025, 1143
AsuC2I CCSGG 1 cut(s) 1038
AsuHPI GGTGA 2 cut(s) 178, 941
BaeGI GKGCMC 2 cut(s) 216, 911
BanI GGYRCC 2 cut(s) 32, 197
BanII GRGCYC 1 cut(s) 911
BauI CACGAG 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 562, 989
BccI CCATC 2 cut(s) 742, 787
BceAI ACGGC 4 cut(s) 316, 328, 790, 1157
BciT130I CCWGG 4 cut(s) 223, 657, 850, 1158
BcnI CCSGG 1 cut(s) 1038
BcoDI GTCTC 4 cut(s) 813, 945, 1027, 1062
BfaI CTAG 4 cut(s) 620, 890, 990, 1315
BfmI CTRYAG 1 cut(s) 1251
BisI GCNGC 7 cut(s) 162, 284, 287, 573, 576, 753, 1003
BlsI GCNGC 7 cut(s) 163, 285, 288, 574, 577, 754, 1004
Bme1390I CCNGG 5 cut(s) 223, 657, 850, 1038, 1158
BmgT120I GGNCC 4 cut(s) 907, 908, 1025, 1143
BmiI GGNNCC 4 cut(s) 34, 199, 532, 909
BmrFI CCNGG 5 cut(s) 223, 657, 850, 1038, 1158
BmrI ACTGGG 1 cut(s) 964
BmsI GCATC 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 964
BpiI GAAGAC 1 cut(s) 263
BplI GAGNNNNNCTC 1 cut(s) 1294
BpmI CTGGAG 1 cut(s) 1179
Bpu10I CCTNAGC 1 cut(s) 353
BpuEI CTTGAG 1 cut(s) 1005
BpuMI CCSGG 1 cut(s) 1038
BsaAI YACGTR 1 cut(s) 484
BsaHI GRCGYC 1 cut(s) 1306
BsaI GGTCTC 1 cut(s) 1027
BsaJI CCNNGG 4 cut(s) 221, 261, 848, 1156
BsaXI ACNNNNNCTCC 8 cut(s) 52, 82, 108, 131, 138, 161, 942, 972
Bsc4I CCNNNNNNNGG 3 cut(s) 226, 586, 1088
Bse1I ACTGG 3 cut(s) 192, 959, 1076
BseBI CCWGG 4 cut(s) 223, 657, 850, 1158
BseDI CCNNGG 4 cut(s) 221, 261, 848, 1156
BseGI GGATG 5 cut(s) 349, 434, 499, 802, 846
BseLI CCNNNNNNNGG 3 cut(s) 226, 586, 1088
BseMII CTCAG 2 cut(s) 727, 957
BseNI ACTGG 3 cut(s) 192, 959, 1076
BseSI GKGCMC 2 cut(s) 216, 911
BseXI GCAGC 2 cut(s) 562, 989
Bsh1236I CGCG 1 cut(s) 913
BshFI GGCC 5 cut(s) 226, 755, 909, 1027, 1144
BshNI GGYRCC 2 cut(s) 32, 197
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 2 cut(s) 227, 1038
BslFI GGGAC 4 cut(s) 417, 831, 1158, 1181
BslI CCNNNNNNNGG 3 cut(s) 226, 586, 1088
BsmAI GTCTC 4 cut(s) 813, 945, 1027, 1062
BsmBI CGTCTC 1 cut(s) 813
BsmFI GGGAC 4 cut(s) 417, 831, 1158, 1181
BsmI GAATGC 1 cut(s) 1217
BsnI GGCC 5 cut(s) 226, 755, 909, 1027, 1144
Bso31I GGTCTC 1 cut(s) 1027
Bsp120I GGGCCC 1 cut(s) 907
Bsp1286I GDGCHC 2 cut(s) 216, 911
Bsp143I GATC 1 cut(s) 622
BspANI GGCC 5 cut(s) 226, 755, 909, 1027, 1144
BspCNI CTCAG 2 cut(s) 726, 958
BspFNI CGCG 1 cut(s) 913
BspHI TCATGA 3 cut(s) 978, 1095, 1188
BspLI GGNNCC 4 cut(s) 34, 199, 532, 909
BspPI GGATC 1 cut(s) 617
BspT107I GGYRCC 2 cut(s) 32, 197
BspTNI GGTCTC 1 cut(s) 1027
BsrI ACTGG 3 cut(s) 192, 959, 1076
BssECI CCNNGG 4 cut(s) 221, 261, 848, 1156
BssMI GATC 1 cut(s) 622
BssNAI GTATAC 1 cut(s) 1258
BssNI GRCGYC 1 cut(s) 1306
BssSI CACGAG 1 cut(s) 363
BssT1I CCWWGG 1 cut(s) 261
Bst1107I GTATAC 1 cut(s) 1258
Bst2BI CACGAG 1 cut(s) 363
Bst2UI CCWGG 4 cut(s) 223, 657, 850, 1158
Bst4CI ACNGT 4 cut(s) 586, 1086, 1172, 1255
Bst6I CTCTTC 5 cut(s) 47, 134, 821, 897, 1128
BstACI GRCGYC 1 cut(s) 1306
BstBAI YACGTR 1 cut(s) 484
BstC8I GCNNGC 6 cut(s) 291, 349, 580, 750, 911, 1108
BstDEI CTNAG 4 cut(s) 353, 713, 966, 1263
BstF5I GGATG 5 cut(s) 349, 434, 499, 802, 846
BstFNI CGCG 1 cut(s) 913
BstHHI GCGC 1 cut(s) 1128
BstKTI GATC 1 cut(s) 625
BstMAI GTCTC 4 cut(s) 813, 945, 1027, 1062
BstMBI GATC 1 cut(s) 622
BstMWI GCNNNNNNNGC 3 cut(s) 167, 969, 1011
BstNI CCWGG 4 cut(s) 223, 657, 850, 1158
BstSCI CCNGG 5 cut(s) 221, 655, 848, 1036, 1156
BstSFI CTRYAG 1 cut(s) 1251
BstSLI GKGCMC 2 cut(s) 216, 911
BstUI CGCG 1 cut(s) 913
BstV1I GCAGC 2 cut(s) 562, 989
BstV2I GAAGAC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
BstZ17I GTATAC 1 cut(s) 1258
BsuRI GGCC 5 cut(s) 226, 755, 909, 1027, 1144
BtgZI GCGATG 1 cut(s) 516
BtsCI GGATG 5 cut(s) 349, 434, 499, 802, 846
BtsI GCAGTG 2 cut(s) 139, 737
BtsIMutI CAGTG 6 cut(s) 139, 199, 591, 721, 737, 1091
Cac8I GCNNGC 6 cut(s) 291, 349, 580, 750, 911, 1108
CciI TCATGA 3 cut(s) 978, 1095, 1188
CfoI GCGC 1 cut(s) 1128
Cfr13I GGNCC 4 cut(s) 907, 908, 1025, 1143
CseI GACGC 1 cut(s) 1295
Csp6I GTAC 2 cut(s) 481, 1139
CviAII CATG 6 cut(s) 328, 793, 979, 1096, 1179, 1189
CviQI GTAC 2 cut(s) 481, 1139
DdeI CTNAG 4 cut(s) 353, 713, 966, 1263
DpnI GATC 1 cut(s) 624
DpnII GATC 1 cut(s) 622
DraIII CACNNNGTG 1 cut(s) 1088
EaeI YGGCCR 2 cut(s) 224, 753
Eam1104I CTCTTC 5 cut(s) 47, 134, 821, 897, 1128
EarI CTCTTC 5 cut(s) 47, 134, 821, 897, 1128
EciI GGCGGA 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 911
Eco31I GGTCTC 1 cut(s) 1027
Eco57I CTGAAG 4 cut(s) 275, 588, 1238, 1260
EcoO109I RGGNCCY 1 cut(s) 907
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 4 cut(s) 221, 655, 848, 1156
EcoT14I CCWWGG 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 911
ErhI CCWWGG 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 813
FaeI CATG 6 cut(s) 331, 796, 982, 1099, 1182, 1192
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 4 cut(s) 417, 831, 1158, 1181
FatI CATG 6 cut(s) 327, 792, 978, 1095, 1178, 1188
FauI CCCGC 3 cut(s) 143, 587, 918
FblI GTMKAC 2 cut(s) 246, 1257
Fnu4HI GCNGC 7 cut(s) 162, 284, 287, 573, 576, 753, 1003
FokI GGATG 5 cut(s) 356, 441, 506, 809, 853
FriOI GRGCYC 1 cut(s) 911
Fsp4HI GCNGC 7 cut(s) 162, 284, 287, 573, 576, 753, 1003
FspBI CTAG 4 cut(s) 620, 890, 990, 1315
GlaI GCGC 1 cut(s) 1127
GluI GCNGC 7 cut(s) 162, 284, 287, 573, 576, 753, 1003
GsuI CTGGAG 1 cut(s) 1179
HaeIII GGCC 5 cut(s) 226, 755, 909, 1027, 1144
HapII CCGG 2 cut(s) 227, 1038
HgaI GACGC 1 cut(s) 1295
HhaI GCGC 1 cut(s) 1128
Hin1I GRCGYC 1 cut(s) 1306
Hin1II CATG 6 cut(s) 331, 796, 982, 1099, 1182, 1192
Hin6I GCGC 1 cut(s) 1126
HinP1I GCGC 1 cut(s) 1126
HincII GTYRAC 2 cut(s) 247, 730
HindII GTYRAC 2 cut(s) 247, 730
HinfI GANTC 2 cut(s) 331, 563
HpaII CCGG 2 cut(s) 227, 1038
HphI GGTGA 2 cut(s) 178, 941
Hpy166II GTNNAC 5 cut(s) 214, 247, 730, 1232, 1258
Hpy188I TCNGA 3 cut(s) 568, 864, 967
Hpy188III TCNNGA 6 cut(s) 365, 462, 890, 979, 1096, 1189
Hpy8I GTNNAC 5 cut(s) 214, 247, 730, 1232, 1258
Hpy99I CGWCG 3 cut(s) 179, 248, 251
HpyAV CCTTC 6 cut(s) 93, 115, 193, 334, 491, 1235
HpyCH4III ACNGT 4 cut(s) 586, 1086, 1172, 1255
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 8 cut(s) 214, 519, 617, 683, 855, 972, 1014, 1106
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 969, 1011
HpyF3I CTNAG 4 cut(s) 353, 713, 966, 1263
HpySE526I ACGT 1 cut(s) 483
Hsp92I GRCGYC 1 cut(s) 1306
Hsp92II CATG 6 cut(s) 331, 796, 982, 1099, 1182, 1192
HspAI GCGC 1 cut(s) 1126
Kzo9I GATC 1 cut(s) 622
LmnI GCTCC 2 cut(s) 149, 1291
Lsp1109I GCAGC 2 cut(s) 562, 989
LweI GCATC 1 cut(s) 334
MaeI CTAG 4 cut(s) 620, 890, 990, 1315
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 3 cut(s) 308, 365, 536
MalI GATC 1 cut(s) 624
MboI GATC 1 cut(s) 622
MboII GAAGA 9 cut(s) 34, 121, 268, 781, 838, 914, 1072, 1145, 1279
MflI RGATCY 1 cut(s) 622
MhlI GDGCHC 2 cut(s) 216, 911
MluCI AATT 8 cut(s) 457, 856, 973, 994, 1099, 1117, 1183, 1192
MseI TTAA 2 cut(s) 558, 605
MspA1I CMGCKG 2 cut(s) 575, 725
MspI CCGG 2 cut(s) 227, 1038
MspR9I CCNGG 5 cut(s) 223, 657, 850, 1038, 1158
Mva1269I GAATGC 1 cut(s) 1217
MvaI CCWGG 4 cut(s) 223, 657, 850, 1158
MvnI CGCG 1 cut(s) 913
MwoI GCNNNNNNNGC 3 cut(s) 167, 969, 1011
NciI CCSGG 1 cut(s) 1038
NdeII GATC 1 cut(s) 622
NlaIII CATG 6 cut(s) 331, 796, 982, 1099, 1182, 1192
NlaIV GGNNCC 4 cut(s) 34, 199, 532, 909
NmuCI GTSAC 3 cut(s) 308, 365, 536
PagI TCATGA 3 cut(s) 978, 1095, 1188
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PctI GAATGC 1 cut(s) 1217
PfeI GAWTC 2 cut(s) 331, 563
PflFI GACNNNGTC 1 cut(s) 956
PflMI CCANNNNNTGG 1 cut(s) 1088
PkrI GCNGC 7 cut(s) 163, 285, 288, 574, 577, 754, 1004
Ppu21I YACGTR 1 cut(s) 484
PshBI ATTAAT 1 cut(s) 605
Psp6I CCWGG 4 cut(s) 221, 655, 848, 1156
PspGI CCWGG 4 cut(s) 221, 655, 848, 1156
PspN4I GGNNCC 4 cut(s) 34, 199, 532, 909
PspOMI GGGCCC 1 cut(s) 907
PspPI GGNCC 4 cut(s) 907, 908, 1025, 1143
PsuI RGATCY 1 cut(s) 622
PsyI GACNNNGTC 1 cut(s) 956
PvuII CAGCTG 1 cut(s) 725
RsaI GTAC 2 cut(s) 482, 1140
RsaNI GTAC 2 cut(s) 481, 1139
SalI GTCGAC 1 cut(s) 245
SaqAI TTAA 2 cut(s) 558, 605
SatI GCNGC 7 cut(s) 162, 284, 287, 573, 576, 753, 1003
Sau3AI GATC 1 cut(s) 622
Sau96I GGNCC 4 cut(s) 907, 908, 1025, 1143
ScrFI CCNGG 5 cut(s) 223, 657, 850, 1038, 1158
SduI GDGCHC 2 cut(s) 216, 911
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 1251
SgrDI CGTCGACG 1 cut(s) 245
SmlI CTYRAG 1 cut(s) 1020
SmoI CTYRAG 1 cut(s) 1020
Sse9I AATT 8 cut(s) 457, 856, 973, 994, 1099, 1117, 1183, 1192
SspI AATATT 1 cut(s) 603
SspMI CTAG 4 cut(s) 620, 890, 990, 1315
StyD4I CCNGG 5 cut(s) 221, 655, 848, 1036, 1156
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 4 cut(s) 586, 1086, 1172, 1255
TaiI ACGT 1 cut(s) 486
TaqI TCGA 2 cut(s) 177, 246
TasI AATT 8 cut(s) 457, 856, 973, 994, 1099, 1117, 1183, 1192
TauI GCSGC 5 cut(s) 164, 286, 289, 575, 755
TfiI GAWTC 2 cut(s) 331, 563
Tru1I TTAA 2 cut(s) 558, 605
Tru9I TTAA 2 cut(s) 558, 605
TscAI CASTG 6 cut(s) 146, 199, 591, 721, 744, 1091
TseFI GTSAC 3 cut(s) 308, 365, 536
TseI GCWGC 2 cut(s) 575, 1002
Tsp45I GTSAC 3 cut(s) 308, 365, 536
TspGWI ACGGA 2 cut(s) 163, 338
TspRI CASTG 6 cut(s) 146, 199, 591, 721, 744, 1091
Tth111I GACNNNGTC 1 cut(s) 956
Van91I CCANNNNNTGG 1 cut(s) 1088
VneI GTGCAC 1 cut(s) 212
VspI ATTAAT 1 cut(s) 605
XapI RAATTY 3 cut(s) 457, 994, 1099
XbaI TCTAGA 1 cut(s) 889
XmiI GTMKAC 2 cut(s) 246, 1257
XspI CTAG 4 cut(s) 620, 890, 990, 1315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.