Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006886

Physical Location & Seq

Genomic Coordinates Forward (+)

66577560 .. 66581354

Gene Structure 3795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00275000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTCCTCTGCTTCCAAGTTCATTCGCTTCGGCACCGCCCTCTTCCATTTTCCCAAACCAACTCTCTCTCCTCCTCCCTCTCCTTCCCTCCTCCCTCTCAAACCCTTCGCCACCTCACAATGTCTCCTCTTCTCACGCCACTGCTCCTCCTCGTCCTCCGCCGCAGTCGCCTCCGTCGATACCTTCACCTCCAGTGGCACCGAAGCCCCTCTGCACCACCCCTGGCCGGAGTGGGTGGCTTTCGTCGACGGGCTGAAGACCAAGGGCTACTTCATCAAACCGCCGCCGCCTGCGGAGGACGGCGAGAGTGACGGCGTTTATACGGACATGAATCAGCTGAAGGATGCTTGCCTTAGCTTTGCTCGTGACCGCTTTGATGTTTTCAAATCATTGTCTGTGGAAGACATTCAAGCACTTGTGGAGGGTGGATGTCCCAATCTGTTGCGAAAAGCTGTGAATTCAGGAAAGCGATTGAGATTGTACGTGAAGCTGGATGAAGGCGATGTTTGTGGTGGTTGCAATCTGCGAGGTTCCTGTGATAGAGCTTATGTTGTTCTTAACGAATCTGAAGCCGCTGCCCGCACAGTGGATATAGTGCGAATATTAATGTATTATGCACTAGATCCACTCGTTATTTCTGGGCAAGAGAAACCTCCTGGCAGAGAGCTTATAGAAACATCTGCAAGAAAACTGCTGTCCAAGTTGCTTCAACTCAGTGAAACAGCTGTTGACCCATCACTGCCAATGCCTGCGGCCAAAGTTCTTCCGAAGAAAAACCATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03022 ko05202 map03022 map05202

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

261

Amino Acids

28.41

Weight (kDa)

8.12

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48570
fragaria_vesca	FvH4_5g17400 FvH4_5g17400 FvH4_5g17400 FvH4_5g17400
malus_domestica	MD06G1227200.v1.1 MD14G1236700.v1.1
prunus_persica	Prupe.5G233800_v2.0.a1 Prupe.5G233800_v2.0.a1
pyrus_communis	pycom06g20370 pycom14g19770
rosa_chinensis	RchiOBHm_Chr7g0178341
rosa_laevigata	RLG00000005454
rosa_multiflora	Rmu_co8220688.1_g000001 Rmu_sc0014842.1_g000010 Rmu_sc0028437.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229690 Rroxscaffold_3G00275000
rosa_rugosa	Rorug06G0416100
rosa_samantha	Rh7AG014900 Rh7BG014400 Rh7CG014400 Rh7CG435500 Rh7DG014700
rosa_wichuraiana	Rw0G010220 Rw7G001180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	32, 197
AccI	GTMKAC	1 cut(s)	246
AclWI	GGATC	1 cut(s)	617
AcoI	YGGCCR	2 cut(s)	224, 753
AcsI	RAATTY	1 cut(s)	457
AcuI	CTGAAG	3 cut(s)	275, 359, 588
AfaI	GTAC	1 cut(s)	482
AfiI	CCNNNNNNNGG	2 cut(s)	226, 586
AgsI	TTSAA	3 cut(s)	385, 410, 710
AjnI	CCWGG	2 cut(s)	221, 655
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	7 cut(s)	337, 357, 452, 490, 545, 667, 725
AluI	AGCT	7 cut(s)	337, 357, 452, 490, 545, 667, 725
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	617
AoxI	GGCC	2 cut(s)	224, 753
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	1 cut(s)	457
AseI	ATTAAT	1 cut(s)	605
Asp700I	GAANNNNTTC	1 cut(s)	405
AsuHPI	GGTGA	1 cut(s)	178
BanI	GGYRCC	2 cut(s)	32, 197
BauI	CACGAG	1 cut(s)	363
BbsI	GAAGAC	2 cut(s)	263, 408
BbvI	GCAGC	1 cut(s)	562
BccI	CCATC	1 cut(s)	742
BceAI	ACGGC	2 cut(s)	316, 328
BciT130I	CCWGG	2 cut(s)	223, 657
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	620
BisI	GCNGC	6 cut(s)	162, 284, 287, 573, 576, 753
BlsI	GCNGC	6 cut(s)	163, 285, 288, 574, 577, 754
Bme1390I	CCNGG	2 cut(s)	223, 657
BmiI	GGNNCC	3 cut(s)	34, 199, 532
BmrFI	CCNGG	2 cut(s)	223, 657
BmsI	GCATC	1 cut(s)	334
BpiI	GAAGAC	2 cut(s)	263, 408
BpmI	CTGGAG	1 cut(s)	175
Bpu10I	CCTNAGC	1 cut(s)	353
BsaAI	YACGTR	1 cut(s)	484
BsaJI	CCNNGG	2 cut(s)	221, 261
BsaXI	ACNNNNNCTCC	6 cut(s)	52, 82, 108, 131, 138, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 586
Bse1I	ACTGG	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	223, 657
BseDI	CCNNGG	2 cut(s)	221, 261
BseGI	GGATG	3 cut(s)	349, 434, 499
BseLI	CCNNNNNNNGG	2 cut(s)	226, 586
BseMII	CTCAG	1 cut(s)	727
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	6 cut(s)	60, 63, 80, 116, 136, 139
BseXI	GCAGC	1 cut(s)	562
BsgI	GTGCAG	1 cut(s)	197
BshFI	GGCC	2 cut(s)	226, 755
BshNI	GGYRCC	2 cut(s)	32, 197
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	417
BslI	CCNNNNNNNGG	2 cut(s)	226, 586
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	417
BsnI	GGCC	2 cut(s)	226, 755
Bsp143I	GATC	1 cut(s)	622
BspANI	GGCC	2 cut(s)	226, 755
BspCNI	CTCAG	1 cut(s)	726
BspLI	GGNNCC	3 cut(s)	34, 199, 532
BspPI	GGATC	1 cut(s)	617
BspT107I	GGYRCC	2 cut(s)	32, 197
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	221, 261
BssMI	GATC	1 cut(s)	622
BssSI	CACGAG	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	223, 657
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	2 cut(s)	47, 134
BstBAI	YACGTR	1 cut(s)	484
BstC8I	GCNNGC	4 cut(s)	291, 349, 580, 750
BstDEI	CTNAG	2 cut(s)	353, 713
BstF5I	GGATG	3 cut(s)	349, 434, 499
BstKTI	GATC	1 cut(s)	625
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	1 cut(s)	622
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	2 cut(s)	223, 657
BstSCI	CCNGG	2 cut(s)	221, 655
BstV1I	GCAGC	1 cut(s)	562
BstV2I	GAAGAC	2 cut(s)	263, 408
BstX2I	RGATCY	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	622
BsuRI	GGCC	2 cut(s)	226, 755
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	3 cut(s)	349, 434, 499
BtsI	GCAGTG	2 cut(s)	139, 737
BtsIMutI	CAGTG	5 cut(s)	139, 199, 591, 721, 737
Cac8I	GCNNGC	4 cut(s)	291, 349, 580, 750
Csp6I	GTAC	1 cut(s)	481
CviAII	CATG	1 cut(s)	328
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	2 cut(s)	353, 713
DpnI	GATC	1 cut(s)	624
DpnII	GATC	1 cut(s)	622
EaeI	YGGCCR	2 cut(s)	224, 753
Eam1104I	CTCTTC	2 cut(s)	47, 134
EarI	CTCTTC	2 cut(s)	47, 134
EciI	GGCGGA	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	261
Eco57I	CTGAAG	3 cut(s)	275, 359, 588
EcoRI	GAATTC	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	221, 655
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	1 cut(s)	331
FaiI	YATR	6 cut(s)	321, 329, 549, 593, 615, 671
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	1 cut(s)	327
FauI	CCCGC	1 cut(s)	587
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	6 cut(s)	162, 284, 287, 573, 576, 753
FokI	GGATG	3 cut(s)	356, 441, 506
Fsp4HI	GCNGC	6 cut(s)	162, 284, 287, 573, 576, 753
FspBI	CTAG	1 cut(s)	620
GluI	GCNGC	6 cut(s)	162, 284, 287, 573, 576, 753
GsuI	CTGGAG	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	226, 755
HapII	CCGG	1 cut(s)	227
Hin1II	CATG	1 cut(s)	331
HincII	GTYRAC	2 cut(s)	247, 730
HindII	GTYRAC	2 cut(s)	247, 730
HinfI	GANTC	2 cut(s)	331, 563
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	2 cut(s)	247, 730
Hpy188I	TCNGA	2 cut(s)	568, 768
Hpy188III	TCNNGA	2 cut(s)	365, 462
Hpy8I	GTNNAC	2 cut(s)	247, 730
Hpy99I	CGWCG	3 cut(s)	179, 248, 251
HpyAV	CCTTC	5 cut(s)	93, 115, 193, 334, 491
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	4 cut(s)	214, 519, 617, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	2 cut(s)	353, 713
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	622
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	1 cut(s)	562
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	620
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	2 cut(s)	308, 365
MalI	GATC	1 cut(s)	624
MboI	GATC	1 cut(s)	622
MboII	GAAGA	6 cut(s)	34, 121, 268, 413, 755, 781
MflI	RGATCY	1 cut(s)	622
MluCI	AATT	1 cut(s)	457
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	2 cut(s)	558, 605
MspA1I	CMGCKG	3 cut(s)	337, 575, 725
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	2 cut(s)	223, 657
MvaI	CCWGG	2 cut(s)	223, 657
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	1 cut(s)	622
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	3 cut(s)	34, 199, 532
NmuCI	GTSAC	2 cut(s)	308, 365
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	331, 563
PkrI	GCNGC	6 cut(s)	163, 285, 288, 574, 577, 754
Ppu21I	YACGTR	1 cut(s)	484
PshBI	ATTAAT	1 cut(s)	605
Psp6I	CCWGG	2 cut(s)	221, 655
PspGI	CCWGG	2 cut(s)	221, 655
PspN4I	GGNNCC	3 cut(s)	34, 199, 532
PsuI	RGATCY	1 cut(s)	622
PvuII	CAGCTG	2 cut(s)	337, 725
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	558, 605
SatI	GCNGC	6 cut(s)	162, 284, 287, 573, 576, 753
Sau3AI	GATC	1 cut(s)	622
ScrFI	CCNGG	2 cut(s)	223, 657
SfaNI	GCATC	1 cut(s)	334
SgrDI	CGTCGACG	1 cut(s)	245
Sse9I	AATT	1 cut(s)	457
SspI	AATATT	1 cut(s)	603
SspMI	CTAG	1 cut(s)	620
StyD4I	CCNGG	2 cut(s)	221, 655
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	586
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	2 cut(s)	177, 246
TasI	AATT	1 cut(s)	457
TauI	GCSGC	5 cut(s)	164, 286, 289, 575, 755
TfiI	GAWTC	2 cut(s)	331, 563
Tru1I	TTAA	2 cut(s)	558, 605
Tru9I	TTAA	2 cut(s)	558, 605
TscAI	CASTG	5 cut(s)	146, 199, 591, 721, 744
TseFI	GTSAC	2 cut(s)	308, 365
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	2 cut(s)	308, 365
TspDTI	ATGAA	4 cut(s)	10, 262, 344, 510
TspGWI	ACGGA	2 cut(s)	163, 338
TspRI	CASTG	5 cut(s)	146, 199, 591, 721, 744
VspI	ATTAAT	1 cut(s)	605
XapI	RAATTY	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.