Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006886

Physical Location & Seq

Genomic Coordinates Reverse (-)

14234340 .. 14238433

Gene Structure 4094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTCAAAAATTCAGGACATTTGGAGATCATTAAGTAGGGTAACAGAGAGCTCGAAGTTAGCAGATCAGCAGCTTTCTCAGAAATTCAGCAAAGCTGTTTTTAACTTCAATTACCAAACAAACAAAGGACGTACAGGCACACCAACTCTCTCCCCTCCTCCTCCTTCTCCTTCCTTCCTCTCTCTCAAACCCTACGCTGCCTCACGGTCTCTTCTCTTCTATCACCATTGCTCCTCCACCGCCGCAGTCTCCTCCGTCGATACCGTCACGGCCGGTAGCACCGAAGGCCCCGTGCACCACCCATGGCCGGAGTGGGTGGCCTTCGTTGACCGATTGAAGACCAAGGGCTGCTTCATCAAACCACCGCTGCCCTGCAGAGGACAAGAAGATCGAGCGCCGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03022 ko05202 map03022 map05202

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

134

Amino Acids

14.88

Weight (kDa)

9.76

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48570
fragaria_vesca	FvH4_5g17400 FvH4_5g17400 FvH4_5g17400 FvH4_5g17400
malus_domestica	MD06G1227200.v1.1 MD14G1236700.v1.1
prunus_persica	Prupe.5G233800_v2.0.a1 Prupe.5G233800_v2.0.a1
pyrus_communis	pycom06g20370 pycom14g19770
rosa_chinensis	RchiOBHm_Chr7g0178341
rosa_laevigata	RLG00000005454
rosa_multiflora	Rmu_co8220688.1_g000001 Rmu_sc0014842.1_g000010 Rmu_sc0028437.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229690 Rroxscaffold_3G00275000
rosa_rugosa	Rorug06G0416100
rosa_samantha	Rh7AG014900 Rh7BG014400 Rh7CG014400 Rh7CG435500 Rh7DG014700
rosa_wichuraiana	Rw0G010220 Rw7G001180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	400
AciI	CCGC	5 cut(s)	240, 243, 365, 398, 400
AcoI	YGGCCR	2 cut(s)	270, 305
AcsI	RAATTY	2 cut(s)	9, 83
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	2 cut(s)	307, 377
AgsI	TTSAA	2 cut(s)	109, 337
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	3 cut(s)	51, 73, 95
AluI	AGCT	3 cut(s)	51, 73, 95
Alw21I	GWGCWC	2 cut(s)	53, 297
Alw26I	GTCTC	2 cut(s)	213, 253
Alw44I	GTGCAC	1 cut(s)	293
AoxI	GGCC	4 cut(s)	270, 286, 305, 318
ApaLI	GTGCAC	1 cut(s)	293
ApeKI	GCWGC	4 cut(s)	70, 197, 348, 367
ApoI	RAATTY	2 cut(s)	9, 83
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	297
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	344
Bbv12I	GWGCWC	2 cut(s)	53, 297
BbvI	GCAGC	4 cut(s)	82, 184, 335, 354
BceAI	ACGGC	1 cut(s)	285
BcoDI	GTCTC	2 cut(s)	213, 253
BfmI	CTRYAG	1 cut(s)	373
BfoI	RGCGCY	1 cut(s)	398
BisI	GCNGC	6 cut(s)	71, 198, 243, 349, 368, 398
BlsI	GCNGC	6 cut(s)	72, 199, 244, 350, 369, 399
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	213
BsaJI	CCNNGG	3 cut(s)	302, 342, 398
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 377
Bse118I	RCCGGY	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	226
BseDI	CCNNGG	3 cut(s)	302, 342, 398
BseLI	CCNNNNNNNGG	2 cut(s)	307, 377
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	92
BseRI	GAGGAG	4 cut(s)	147, 150, 223, 241
BseSI	GKGCMC	1 cut(s)	297
BseX3I	CGGCCG	1 cut(s)	270
BseXI	GCAGC	4 cut(s)	82, 184, 335, 354
Bsh1236I	CGCG	1 cut(s)	400
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	4 cut(s)	272, 288, 307, 320
BsiEI	CGRYCG	1 cut(s)	273
BsiHKAI	GWGCWC	2 cut(s)	53, 297
BsiSI	CCGG	2 cut(s)	273, 308
BslI	CCNNNNNNNGG	2 cut(s)	307, 377
BsmAI	GTCTC	2 cut(s)	213, 253
BsnI	GGCC	4 cut(s)	272, 288, 307, 320
Bso31I	GGTCTC	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	53, 297
Bsp143I	GATC	3 cut(s)	26, 64, 388
Bsp19I	CCATGG	1 cut(s)	302
BspACI	CCGC	5 cut(s)	240, 243, 365, 398, 400
BspANI	GGCC	4 cut(s)	272, 288, 307, 320
BspCNI	CTCAG	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	289
BspMAI	CTGCAG	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	226
BsrFI	RCCGGY	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	3 cut(s)	302, 342, 398
BssMI	GATC	3 cut(s)	26, 64, 388
BssT1I	CCWWGG	2 cut(s)	302, 342
Bst4CI	ACNGT	2 cut(s)	207, 265
Bst6I	CTCTTC	2 cut(s)	216, 221
BstDEI	CTNAG	1 cut(s)	78
BstDSI	CCRYGG	2 cut(s)	302, 398
BstFNI	CGCG	1 cut(s)	400
BstH2I	RGCGCY	1 cut(s)	398
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	3 cut(s)	29, 67, 391
BstMAI	GTCTC	2 cut(s)	213, 253
BstMBI	GATC	3 cut(s)	26, 64, 388
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	373
BstSLI	GKGCMC	1 cut(s)	297
BstUI	CGCG	1 cut(s)	400
BstV1I	GCAGC	4 cut(s)	82, 184, 335, 354
BstV2I	GAAGAC	1 cut(s)	344
BstZI	CGGCCG	1 cut(s)	270
BsuRI	GGCC	4 cut(s)	272, 288, 307, 320
BtgI	CCRYGG	2 cut(s)	302, 398
CfoI	GCGC	1 cut(s)	397
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	287
Cfr42I	CCGCGG	1 cut(s)	401
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	1 cut(s)	303
CviJI	RGCY	8 cut(s)	51, 73, 95, 272, 288, 307, 320, 348
CviKI_1	RGCY	8 cut(s)	51, 73, 95, 272, 288, 307, 320, 348
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	3 cut(s)	28, 66, 390
DpnII	GATC	3 cut(s)	26, 64, 388
EaeI	YGGCCR	2 cut(s)	270, 305
EagI	CGGCCG	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	216, 221
EarI	CTCTTC	2 cut(s)	216, 221
Ecl136II	GAGCTC	1 cut(s)	51
EclXI	CGGCCG	1 cut(s)	270
Eco130I	CCWWGG	2 cut(s)	302, 342
Eco24I	GRGCYC	1 cut(s)	53
Eco31I	GGTCTC	1 cut(s)	213
Eco52I	CGGCCG	1 cut(s)	270
Eco53kI	GAGCTC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	287
EcoT14I	CCWWGG	2 cut(s)	302, 342
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	2 cut(s)	302, 342
FaeI	CATG	1 cut(s)	306
FaiI	YATR	1 cut(s)	304
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FatI	CATG	1 cut(s)	302
Fnu4HI	GCNGC	6 cut(s)	71, 198, 243, 349, 368, 398
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	6 cut(s)	71, 198, 243, 349, 368, 398
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	6 cut(s)	71, 198, 243, 349, 368, 398
HaeII	RGCGCY	1 cut(s)	398
HaeIII	GGCC	4 cut(s)	272, 288, 307, 320
HapII	CCGG	2 cut(s)	273, 308
HhaI	GCGC	1 cut(s)	397
Hin1II	CATG	1 cut(s)	306
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HpaII	CCGG	2 cut(s)	273, 308
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	295, 328
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	2 cut(s)	295, 328
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	5 cut(s)	174, 180, 184, 278, 331
HpyCH4III	ACNGT	2 cut(s)	207, 265
HpyCH4IV	ACGT	1 cut(s)	130
HpyCH4V	TGCA	2 cut(s)	295, 375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	130
Hsp92II	CATG	1 cut(s)	306
HspAI	GCGC	1 cut(s)	395
KspI	CCGCGG	1 cut(s)	401
Kzo9I	GATC	3 cut(s)	26, 64, 388
LmnI	GCTCC	1 cut(s)	236
LpnPI	CCDG	4 cut(s)	120, 286, 321, 385
Lsp1109I	GCAGC	4 cut(s)	82, 184, 335, 354
MaeII	ACGT	1 cut(s)	130
MaeIII	GTNAC	2 cut(s)	40, 265
MalI	GATC	3 cut(s)	28, 66, 390
MboI	GATC	3 cut(s)	26, 64, 388
MboII	GAAGA	4 cut(s)	203, 208, 349, 398
MhlI	GDGCHC	2 cut(s)	53, 297
MluCI	AATT	3 cut(s)	9, 83, 109
MnlI	CCTC	8 cut(s)	165, 168, 171, 188, 211, 244, 262, 371
MseI	TTAA	2 cut(s)	32, 102
MspA1I	CMGCKG	2 cut(s)	367, 400
MspI	CCGG	2 cut(s)	273, 308
MvnI	CGCG	1 cut(s)	400
MwoI	GCNNNNNNNGC	1 cut(s)	285
NcoI	CCATGG	1 cut(s)	302
NdeII	GATC	3 cut(s)	26, 64, 388
NlaIII	CATG	1 cut(s)	306
NlaIV	GGNNCC	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	265
PkrI	GCNGC	6 cut(s)	72, 199, 244, 350, 369, 399
Psp124BI	GAGCTC	1 cut(s)	53
PspN4I	GGNNCC	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	287
PstI	CTGCAG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	53
SacII	CCGCGG	1 cut(s)	401
SaqAI	TTAA	2 cut(s)	32, 102
SatI	GCNGC	6 cut(s)	71, 198, 243, 349, 368, 398
Sau3AI	GATC	3 cut(s)	26, 64, 388
Sau96I	GGNCC	1 cut(s)	287
SduI	GDGCHC	2 cut(s)	53, 297
SetI	ASST	4 cut(s)	53, 75, 97, 133
SfcI	CTRYAG	1 cut(s)	373
Sfr303I	CCGCGG	1 cut(s)	401
SgrBI	CCGCGG	1 cut(s)	401
Sse9I	AATT	3 cut(s)	9, 83, 109
SsiI	CCGC	5 cut(s)	240, 243, 365, 398, 400
SstI	GAGCTC	1 cut(s)	53
StyI	CCWWGG	2 cut(s)	302, 342
TaaI	ACNGT	2 cut(s)	207, 265
TaiI	ACGT	1 cut(s)	133
TaqI	TCGA	3 cut(s)	53, 258, 391
TaqII	GACCGA	1 cut(s)	345
TasI	AATT	3 cut(s)	9, 83, 109
TauI	GCSGC	2 cut(s)	245, 400
Tru1I	TTAA	2 cut(s)	32, 102
Tru9I	TTAA	2 cut(s)	32, 102
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	4 cut(s)	70, 197, 348, 367
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	1 cut(s)	343
TspGWI	ACGGA	1 cut(s)	244
VneI	GTGCAC	1 cut(s)	293
XapI	RAATTY	2 cut(s)	9, 83
XcmI	CCANNNNNNNNNTGG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.