RLG00000005454

Zinc finger protein VAR3

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
67733175 .. 67736204
3030 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005454

Sequence Viewer

Length: 1308 bp
ATGTCCTCTGCTTCCAAGTTCATTCGCTTCGGCACCGCCCTCTTCCATTTTCCCAAACCAACTCTCTCTCCTCCTCCCTCTCCTTCGCTCCTTCCTCTCAAACCCTTCGCCACCTCACAATCTCTCCTCTTCTCCCGCCACTGCTCCTCCGCCGCAGTCGCCTCCGTCGATACCTTCACCGCCAGTGGCACCGAAGCCCCTGTGCACCACCCCTGGCCGGAGTGGGTGGCTTTCGTCGACGGGCTGAAGACCAAGGGCTACTTCATCAAACCGCCGCCGCCTGCGGAGGACGGCGAGAGTGACGGCGTTTATACGGACATGAATCAGTTGAAGGATGCTTGCCTTAGCTTTGCTCGTGACCGCTTTGATGTTTTCAAATCATTGTCTGTGGAAGACATTCAAGCACTTGTGGAGGGTGGATGTCCCAATCTGTTGCGAAAAGCTGTGAATTCAGGAAAGCGATTGAGATTGTACGTGAAGCTGGATGAAGGCGATGTTTGTGGTGGTTGCAATCTGCGAGGTTCCTGTGATAGAGCTTATGTTGTTCTTAACGAATCTGAAGCCGCTGCCCGCACAGTGGATATAGTGCGAATATTAATGTATTATGCACTAGATCCACTCGTTATTTCTGGGCAAGAGAAACCTCCTGGCAGAGAGCTTATAGAAACATCTGCAAGAAAACTGCTGTCCAAGTTGCTTCAACTAAGTGAAACAGCTGTTGACCCATCACTGCCAATGCCTGCGGCCAAAGTTCTTCCGAAGAAAAAACCATCTGCAAGTTTCATGGATGATGAGCCGTCTCAAACTGCTGAAATGAAGAGAGGAGATTGGATGTGTCCCAGGTGCAATTTTCTGAACTTCGCTAAAAATATAAGATGTCTAGAGTGTAAAGAAGAGGGCCCGCGAAAAGTTGATATGGGTGATGTTGAAATGAAAAAAGGAGACTGGGTCTGCTCTGAGTGCAATTTCATGAACTTCGCTAGAAATTTTCGCTGCCTAAAGTGCAAAACTCAAGGGCCAAAGAGACCCGGTGTAGACGATGTCAAAATGAAGAAAGGAGACTGGAACTGCCCACAGTGTGGGTTCATGAATTTTGCAAGCAAAAGGAATTGTTTGCGATGTGAAGAGGTACGGCCCAAGATAAACCCTGGAGATTGGGACTGTCCCTCATGTAATTTCATGAATTATGGGAGAAACACAGAATGCCTGAAGTGTAAATGTGAACGCCCTGAAGGAGAAACTACAGTATACCCTAAGAAGAAACTACATACTGAATATGAGGAGCAAATATGGAGGCGTCCTCGCTAG

Protein Analysis

436

Amino Acids

48.87

Weight (kDa)

8.65

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 312 - 339 4.8e-07 Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP PF00641 351 - 379 6.5e-08 Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP PF00641 384 - 410 1.5e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 32, 188
AccB7I CCANNNNNTGG 1 cut(s) 1079
AccI GTMKAC 3 cut(s) 237, 1035, 1248
AccII CGCG 1 cut(s) 904
AclWI GGATC 1 cut(s) 608
AcoI YGGCCR 2 cut(s) 215, 744
AcsI RAATTY 3 cut(s) 448, 985, 1090
AcuI CTGAAG 4 cut(s) 266, 579, 1229, 1251
AcyI GRCGYC 1 cut(s) 1297
AdeI CACNNNGTG 1 cut(s) 1079
AfaI GTAC 2 cut(s) 473, 1131
AfiI CCNNNNNNNGG 3 cut(s) 217, 577, 1079
AgsI TTSAA 5 cut(s) 331, 376, 401, 701, 929
AjnI CCWGG 4 cut(s) 212, 646, 839, 1147
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 6 cut(s) 348, 443, 481, 536, 658, 716
AluI AGCT 6 cut(s) 348, 443, 481, 536, 658, 716
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 4 cut(s) 804, 936, 1018, 1053
Alw44I GTGCAC 1 cut(s) 203
AlwI GGATC 1 cut(s) 608
AoxI GGCC 5 cut(s) 215, 744, 898, 1016, 1133
ApaI GGGCCC 1 cut(s) 902
ApaLI GTGCAC 1 cut(s) 203
ApeKI GCWGC 2 cut(s) 566, 993
ApoI RAATTY 3 cut(s) 448, 985, 1090
AseI ATTAAT 1 cut(s) 596
Asp700I GAANNNNTTC 1 cut(s) 396
AspS9I GGNCC 4 cut(s) 898, 899, 1016, 1134
AsuC2I CCSGG 1 cut(s) 1029
AsuHPI GGTGA 2 cut(s) 169, 932
BaeGI GKGCMC 2 cut(s) 207, 902
BanI GGYRCC 2 cut(s) 32, 188
BanII GRGCYC 1 cut(s) 902
BauI CACGAG 1 cut(s) 354
BbsI GAAGAC 2 cut(s) 254, 399
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 553, 980
BccI CCATC 2 cut(s) 733, 778
BceAI ACGGC 4 cut(s) 307, 319, 781, 1148
BciT130I CCWGG 4 cut(s) 214, 648, 841, 1149
BcnI CCSGG 1 cut(s) 1029
BcoDI GTCTC 4 cut(s) 804, 936, 1018, 1053
BfaI CTAG 4 cut(s) 611, 881, 981, 1306
BfmI CTRYAG 1 cut(s) 1242
BisI GCNGC 7 cut(s) 153, 275, 278, 564, 567, 744, 994
BlsI GCNGC 7 cut(s) 154, 276, 279, 565, 568, 745, 995
Bme1390I CCNGG 5 cut(s) 214, 648, 841, 1029, 1149
BmgT120I GGNCC 4 cut(s) 898, 899, 1016, 1134
BmiI GGNNCC 4 cut(s) 34, 190, 523, 900
BmrFI CCNGG 5 cut(s) 214, 648, 841, 1029, 1149
BmrI ACTGGG 1 cut(s) 955
BmsI GCATC 1 cut(s) 325
BmuI ACTGGG 1 cut(s) 955
BpiI GAAGAC 2 cut(s) 254, 399
BplI GAGNNNNNCTC 1 cut(s) 1285
BpmI CTGGAG 1 cut(s) 1170
Bpu10I CCTNAGC 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 996
BpuMI CCSGG 1 cut(s) 1029
BsaAI YACGTR 1 cut(s) 475
BsaHI GRCGYC 1 cut(s) 1297
BsaI GGTCTC 1 cut(s) 1018
BsaJI CCNNGG 4 cut(s) 212, 252, 839, 1147
BsaXI ACNNNNNCTCC 8 cut(s) 52, 82, 108, 131, 138, 161, 933, 963
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 577, 1079
Bse1I ACTGG 3 cut(s) 183, 950, 1067
BseBI CCWGG 4 cut(s) 214, 648, 841, 1149
BseDI CCNNGG 4 cut(s) 212, 252, 839, 1147
BseGI GGATG 5 cut(s) 340, 425, 490, 793, 837
BseLI CCNNNNNNNGG 3 cut(s) 217, 577, 1079
BseMII CTCAG 1 cut(s) 948
BseNI ACTGG 3 cut(s) 183, 950, 1067
BseRI GAGGAG 6 cut(s) 60, 63, 116, 136, 837, 1295
BseSI GKGCMC 2 cut(s) 207, 902
BseXI GCAGC 2 cut(s) 553, 980
Bsh1236I CGCG 1 cut(s) 904
BshFI GGCC 5 cut(s) 217, 746, 900, 1018, 1135
BshNI GGYRCC 2 cut(s) 32, 188
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 2 cut(s) 218, 1029
BslFI GGGAC 4 cut(s) 408, 822, 1149, 1172
BslI CCNNNNNNNGG 3 cut(s) 217, 577, 1079
BsmAI GTCTC 4 cut(s) 804, 936, 1018, 1053
BsmBI CGTCTC 1 cut(s) 804
BsmFI GGGAC 4 cut(s) 408, 822, 1149, 1172
BsmI GAATGC 1 cut(s) 1208
BsnI GGCC 5 cut(s) 217, 746, 900, 1018, 1135
Bso31I GGTCTC 1 cut(s) 1018
Bsp120I GGGCCC 1 cut(s) 898
Bsp1286I GDGCHC 2 cut(s) 207, 902
Bsp143I GATC 1 cut(s) 613
BspANI GGCC 5 cut(s) 217, 746, 900, 1018, 1135
BspCNI CTCAG 1 cut(s) 949
BspFNI CGCG 1 cut(s) 904
BspHI TCATGA 3 cut(s) 969, 1086, 1179
BspLI GGNNCC 4 cut(s) 34, 190, 523, 900
BspPI GGATC 1 cut(s) 608
BspT107I GGYRCC 2 cut(s) 32, 188
BspTNI GGTCTC 1 cut(s) 1018
BsrI ACTGG 3 cut(s) 183, 950, 1067
BssECI CCNNGG 4 cut(s) 212, 252, 839, 1147
BssMI GATC 1 cut(s) 613
BssNAI GTATAC 1 cut(s) 1249
BssNI GRCGYC 1 cut(s) 1297
BssSI CACGAG 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 252
Bst1107I GTATAC 1 cut(s) 1249
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 4 cut(s) 214, 648, 841, 1149
Bst4CI ACNGT 4 cut(s) 577, 1077, 1163, 1246
Bst6I CTCTTC 5 cut(s) 47, 134, 812, 888, 1119
BstACI GRCGYC 1 cut(s) 1297
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 6 cut(s) 282, 340, 571, 741, 902, 1099
BstDEI CTNAG 4 cut(s) 344, 704, 957, 1254
BstF5I GGATG 5 cut(s) 340, 425, 490, 793, 837
BstFNI CGCG 1 cut(s) 904
BstKTI GATC 1 cut(s) 616
BstMAI GTCTC 4 cut(s) 804, 936, 1018, 1053
BstMBI GATC 1 cut(s) 613
BstMWI GCNNNNNNNGC 3 cut(s) 158, 960, 1002
BstNI CCWGG 4 cut(s) 214, 648, 841, 1149
BstSCI CCNGG 5 cut(s) 212, 646, 839, 1027, 1147
BstSFI CTRYAG 1 cut(s) 1242
BstSLI GKGCMC 2 cut(s) 207, 902
BstUI CGCG 1 cut(s) 904
BstV1I GCAGC 2 cut(s) 553, 980
BstV2I GAAGAC 2 cut(s) 254, 399
BstX2I RGATCY 1 cut(s) 613
BstYI RGATCY 1 cut(s) 613
BstZ17I GTATAC 1 cut(s) 1249
BsuRI GGCC 5 cut(s) 217, 746, 900, 1018, 1135
BtgZI GCGATG 2 cut(s) 507, 1132
BtsCI GGATG 5 cut(s) 340, 425, 490, 793, 837
BtsI GCAGTG 2 cut(s) 139, 728
BtsIMutI CAGTG 5 cut(s) 139, 190, 582, 728, 1082
Cac8I GCNNGC 6 cut(s) 282, 340, 571, 741, 902, 1099
CciI TCATGA 3 cut(s) 969, 1086, 1179
Cfr13I GGNCC 4 cut(s) 898, 899, 1016, 1134
CseI GACGC 1 cut(s) 1286
Csp6I GTAC 2 cut(s) 472, 1130
CviAII CATG 6 cut(s) 319, 784, 970, 1087, 1170, 1180
CviQI GTAC 2 cut(s) 472, 1130
DdeI CTNAG 4 cut(s) 344, 704, 957, 1254
DpnI GATC 1 cut(s) 615
DpnII GATC 1 cut(s) 613
DraIII CACNNNGTG 1 cut(s) 1079
EaeI YGGCCR 2 cut(s) 215, 744
Eam1104I CTCTTC 5 cut(s) 47, 134, 812, 888, 1119
EarI CTCTTC 5 cut(s) 47, 134, 812, 888, 1119
EciI GGCGGA 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 902
Eco31I GGTCTC 1 cut(s) 1018
Eco57I CTGAAG 4 cut(s) 266, 579, 1229, 1251
EcoO109I RGGNCCY 1 cut(s) 898
EcoRI GAATTC 1 cut(s) 448
EcoRII CCWGG 4 cut(s) 212, 646, 839, 1147
EcoT14I CCWWGG 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 902
ErhI CCWWGG 1 cut(s) 252
Esp3I CGTCTC 1 cut(s) 804
FaeI CATG 6 cut(s) 322, 787, 973, 1090, 1173, 1183
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 4 cut(s) 408, 822, 1149, 1172
FatI CATG 6 cut(s) 318, 783, 969, 1086, 1169, 1179
FauI CCCGC 3 cut(s) 143, 578, 909
FblI GTMKAC 3 cut(s) 237, 1035, 1248
Fnu4HI GCNGC 7 cut(s) 153, 275, 278, 564, 567, 744, 994
FokI GGATG 5 cut(s) 347, 432, 497, 800, 844
FriOI GRGCYC 1 cut(s) 902
Fsp4HI GCNGC 7 cut(s) 153, 275, 278, 564, 567, 744, 994
FspBI CTAG 4 cut(s) 611, 881, 981, 1306
GluI GCNGC 7 cut(s) 153, 275, 278, 564, 567, 744, 994
GsuI CTGGAG 1 cut(s) 1170
HaeIII GGCC 5 cut(s) 217, 746, 900, 1018, 1135
HapII CCGG 2 cut(s) 218, 1029
HgaI GACGC 1 cut(s) 1286
Hin1I GRCGYC 1 cut(s) 1297
Hin1II CATG 6 cut(s) 322, 787, 973, 1090, 1173, 1183
HincII GTYRAC 2 cut(s) 238, 721
HindII GTYRAC 2 cut(s) 238, 721
HinfI GANTC 2 cut(s) 322, 554
HpaII CCGG 2 cut(s) 218, 1029
HphI GGTGA 2 cut(s) 169, 932
Hpy166II GTNNAC 6 cut(s) 205, 238, 721, 1036, 1223, 1249
Hpy188I TCNGA 4 cut(s) 559, 759, 855, 958
Hpy188III TCNNGA 6 cut(s) 356, 453, 881, 970, 1087, 1180
Hpy8I GTNNAC 6 cut(s) 205, 238, 721, 1036, 1223, 1249
Hpy99I CGWCG 3 cut(s) 170, 239, 242
HpyAV CCTTC 7 cut(s) 93, 101, 115, 184, 325, 482, 1226
HpyCH4III ACNGT 4 cut(s) 577, 1077, 1163, 1246
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 9 cut(s) 205, 510, 608, 674, 776, 846, 963, 1005, 1097
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 960, 1002
HpyF3I CTNAG 4 cut(s) 344, 704, 957, 1254
HpySE526I ACGT 1 cut(s) 474
Hsp92I GRCGYC 1 cut(s) 1297
Hsp92II CATG 6 cut(s) 322, 787, 973, 1090, 1173, 1183
Kzo9I GATC 1 cut(s) 613
LmnI GCTCC 3 cut(s) 93, 149, 1282
Lsp1109I GCAGC 2 cut(s) 553, 980
LweI GCATC 1 cut(s) 325
MaeI CTAG 4 cut(s) 611, 881, 981, 1306
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 2 cut(s) 299, 356
MalI GATC 1 cut(s) 615
MboI GATC 1 cut(s) 613
MflI RGATCY 1 cut(s) 613
MhlI GDGCHC 2 cut(s) 207, 902
MluCI AATT 8 cut(s) 448, 847, 964, 985, 1090, 1108, 1174, 1183
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 2 cut(s) 549, 596
MspA1I CMGCKG 2 cut(s) 566, 716
MspI CCGG 2 cut(s) 218, 1029
MspR9I CCNGG 5 cut(s) 214, 648, 841, 1029, 1149
Mva1269I GAATGC 1 cut(s) 1208
MvaI CCWGG 4 cut(s) 214, 648, 841, 1149
MvnI CGCG 1 cut(s) 904
MwoI GCNNNNNNNGC 3 cut(s) 158, 960, 1002
NciI CCSGG 1 cut(s) 1029
NdeII GATC 1 cut(s) 613
NlaIII CATG 6 cut(s) 322, 787, 973, 1090, 1173, 1183
NlaIV GGNNCC 4 cut(s) 34, 190, 523, 900
NmuCI GTSAC 2 cut(s) 299, 356
PagI TCATGA 3 cut(s) 969, 1086, 1179
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 1 cut(s) 1208
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 2 cut(s) 322, 554
PflFI GACNNNGTC 2 cut(s) 947, 1040
PflMI CCANNNNNTGG 1 cut(s) 1079
PkrI GCNGC 7 cut(s) 154, 276, 279, 565, 568, 745, 995
Ppu21I YACGTR 1 cut(s) 475
PshBI ATTAAT 1 cut(s) 596
Psp6I CCWGG 4 cut(s) 212, 646, 839, 1147
PspGI CCWGG 4 cut(s) 212, 646, 839, 1147
PspN4I GGNNCC 4 cut(s) 34, 190, 523, 900
PspOMI GGGCCC 1 cut(s) 898
PspPI GGNCC 4 cut(s) 898, 899, 1016, 1134
PsuI RGATCY 1 cut(s) 613
PsyI GACNNNGTC 2 cut(s) 947, 1040
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 2 cut(s) 473, 1131
RsaNI GTAC 2 cut(s) 472, 1130
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 2 cut(s) 549, 596
SatI GCNGC 7 cut(s) 153, 275, 278, 564, 567, 744, 994
Sau3AI GATC 1 cut(s) 613
Sau96I GGNCC 4 cut(s) 898, 899, 1016, 1134
ScrFI CCNGG 5 cut(s) 214, 648, 841, 1029, 1149
SduI GDGCHC 2 cut(s) 207, 902
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 1 cut(s) 1242
SgrDI CGTCGACG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 1011
SmoI CTYRAG 1 cut(s) 1011
Sse9I AATT 8 cut(s) 448, 847, 964, 985, 1090, 1108, 1174, 1183
SspI AATATT 1 cut(s) 594
SspMI CTAG 4 cut(s) 611, 881, 981, 1306
StyD4I CCNGG 5 cut(s) 212, 646, 839, 1027, 1147
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 4 cut(s) 577, 1077, 1163, 1246
TaiI ACGT 1 cut(s) 477
TaqI TCGA 2 cut(s) 168, 237
TasI AATT 8 cut(s) 448, 847, 964, 985, 1090, 1108, 1174, 1183
TauI GCSGC 5 cut(s) 155, 277, 280, 566, 746
TfiI GAWTC 2 cut(s) 322, 554
Tru1I TTAA 2 cut(s) 549, 596
Tru9I TTAA 2 cut(s) 549, 596
TscAI CASTG 5 cut(s) 146, 190, 582, 735, 1082
TseFI GTSAC 2 cut(s) 299, 356
TseI GCWGC 2 cut(s) 566, 993
Tsp45I GTSAC 2 cut(s) 299, 356
TspGWI ACGGA 2 cut(s) 154, 329
TspRI CASTG 5 cut(s) 146, 190, 582, 735, 1082
Tth111I GACNNNGTC 2 cut(s) 947, 1040
Van91I CCANNNNNTGG 1 cut(s) 1079
VneI GTGCAC 1 cut(s) 203
VspI ATTAAT 1 cut(s) 596
XapI RAATTY 3 cut(s) 448, 985, 1090
XbaI TCTAGA 1 cut(s) 880
XmiI GTMKAC 3 cut(s) 237, 1035, 1248
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 4 cut(s) 611, 881, 981, 1306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.