Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006886

Physical Location & Seq

Genomic Coordinates Reverse (-)

920047 .. 923614

Gene Structure 3568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG014400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGTCCTCTGCTTCCAAGTTCATTCGCTTCGGCACCGCCCTCTTCCATTTTCCCAAACCAACTCTCTCTCCTCCTCCCTCTCCTTCCCTCCTCCCTCTCAAACCCTTCGCCACCTCACAATCTCTCCTCTTCTCCCGCCACTGCTCCTCCTCCGCCGCAGTCGCCTCCGTCGATACCTTCACCGCCAGCGGCACCGAAGCCCCTGTGCACCACCCCTGGCCGGAGTGGGTGGCTTTCGTCGACGGGCTGAAGACCAAGGGCTACTTCATCAAACCGCCGCCGCCTGCGGAGGACGGCGAGAGTGACGGCGTTTATACGGACATGAATCAGTTGAAGGATGCTTGCCTTAGCTTTGCTCGTGACCGCTTTGATGTTTTCAAATCATTGTCTGTGGCAGACATTCAAGCACTTGTGGAGGGTGGATGTCCCAATCTGTTGCGAAAAGCTGTGAATTCAGGAAAGCGATTGAGATTGTACGTGAAGCTGGATGAAGGCGATGTTTGTGGTGGTTGCAATCTGCGAGGTTCCTGTGACAGAGCTTATGTTGTTCTTAACGAATCTGAAGCCGCTGCCCGCACAGTGGATATAGTGCGAATATTAATGTATTATGCACTAGATCCACTCGTTATTTCTGGGCAAGAGAAACCTCCTGGCAGAGAGCTTATAGAAACATCTGCAAGAAAACTGCTGTCCAAGTTGCTTCAACTCAGTGAAACAGCTGTTGACCCATCACTGCCAATGCCTGCGGCCAAAGTTCTTCCGAAGAAAAAACCATCTGTAAGTTTCATGGATGATGAGCCGTCTCAAACTGCTGAAATGAAGAGAGGAGATTGGATGTGTCCCAGGTGCAATTTTCTGAACTTTGCTAAAAATATAAGATGTCTAGAGTGTAAAGAAGAGGGCCCGCGAAAAGTTGATATGGGTGATGTTGAAATGAAAAAAGGAGACTGGGTCTGCTCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03022 ko05202 map03022 map05202

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

321

Amino Acids

35.28

Weight (kDa)

7.47

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48570
fragaria_vesca	FvH4_5g17400 FvH4_5g17400 FvH4_5g17400 FvH4_5g17400
malus_domestica	MD06G1227200.v1.1 MD14G1236700.v1.1
prunus_persica	Prupe.5G233800_v2.0.a1 Prupe.5G233800_v2.0.a1
pyrus_communis	pycom06g20370 pycom14g19770
rosa_chinensis	RchiOBHm_Chr7g0178341
rosa_laevigata	RLG00000005454
rosa_multiflora	Rmu_co8220688.1_g000001 Rmu_sc0014842.1_g000010 Rmu_sc0028437.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229690 Rroxscaffold_3G00275000
rosa_rugosa	Rorug06G0416100
rosa_samantha	Rh7AG014900 Rh7BG014400 Rh7CG014400 Rh7CG435500 Rh7DG014700
rosa_wichuraiana	Rw0G010220 Rw7G001180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	32, 191
AccI	GTMKAC	1 cut(s)	240
AccII	CGCG	1 cut(s)	907
AclWI	GGATC	1 cut(s)	611
AcoI	YGGCCR	2 cut(s)	218, 747
AcsI	RAATTY	1 cut(s)	451
AcuI	CTGAAG	2 cut(s)	269, 582
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	2 cut(s)	220, 580
AgsI	TTSAA	5 cut(s)	334, 379, 404, 704, 932
AjnI	CCWGG	3 cut(s)	215, 649, 842
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AluBI	AGCT	6 cut(s)	351, 446, 484, 539, 661, 719
AluI	AGCT	6 cut(s)	351, 446, 484, 539, 661, 719
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	2 cut(s)	807, 939
Alw44I	GTGCAC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	611
AoxI	GGCC	3 cut(s)	218, 747, 901
ApaI	GGGCCC	1 cut(s)	905
ApaLI	GTGCAC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	569
ApoI	RAATTY	1 cut(s)	451
AseI	ATTAAT	1 cut(s)	599
AspS9I	GGNCC	2 cut(s)	901, 902
AsuHPI	GGTGA	2 cut(s)	172, 935
BaeGI	GKGCMC	2 cut(s)	210, 905
BanI	GGYRCC	2 cut(s)	32, 191
BanII	GRGCYC	1 cut(s)	905
BauI	CACGAG	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	556
BccI	CCATC	2 cut(s)	736, 781
BceAI	ACGGC	3 cut(s)	310, 322, 784
BciT130I	CCWGG	3 cut(s)	217, 651, 844
BcoDI	GTCTC	2 cut(s)	807, 939
BfaI	CTAG	2 cut(s)	614, 884
BisI	GCNGC	7 cut(s)	156, 190, 278, 281, 567, 570, 747
BlsI	GCNGC	7 cut(s)	157, 191, 279, 282, 568, 571, 748
Bme1390I	CCNGG	3 cut(s)	217, 651, 844
BmgT120I	GGNCC	2 cut(s)	901, 902
BmiI	GGNNCC	4 cut(s)	34, 193, 526, 903
BmrFI	CCNGG	3 cut(s)	217, 651, 844
BmrI	ACTGGG	1 cut(s)	958
BmsI	GCATC	1 cut(s)	328
BmuI	ACTGGG	1 cut(s)	958
BpiI	GAAGAC	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	347
BsaAI	YACGTR	1 cut(s)	478
BsaJI	CCNNGG	3 cut(s)	215, 255, 842
BsaXI	ACNNNNNCTCC	8 cut(s)	52, 82, 108, 131, 138, 161, 936, 966
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 580
Bse1I	ACTGG	1 cut(s)	953
BseBI	CCWGG	3 cut(s)	217, 651, 844
BseDI	CCNNGG	3 cut(s)	215, 255, 842
BseGI	GGATG	5 cut(s)	343, 428, 493, 796, 840
BseLI	CCNNNNNNNGG	2 cut(s)	220, 580
BseMII	CTCAG	2 cut(s)	721, 951
BseNI	ACTGG	1 cut(s)	953
BseRI	GAGGAG	7 cut(s)	60, 63, 80, 116, 136, 139, 840
BseSI	GKGCMC	2 cut(s)	210, 905
BseXI	GCAGC	1 cut(s)	556
Bsh1236I	CGCG	1 cut(s)	907
BshFI	GGCC	3 cut(s)	220, 749, 903
BshNI	GGYRCC	2 cut(s)	32, 191
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	2 cut(s)	411, 825
BslI	CCNNNNNNNGG	2 cut(s)	220, 580
BsmAI	GTCTC	2 cut(s)	807, 939
BsmBI	CGTCTC	1 cut(s)	807
BsmFI	GGGAC	2 cut(s)	411, 825
BsnI	GGCC	3 cut(s)	220, 749, 903
Bsp120I	GGGCCC	1 cut(s)	901
Bsp1286I	GDGCHC	2 cut(s)	210, 905
Bsp143I	GATC	1 cut(s)	616
BspANI	GGCC	3 cut(s)	220, 749, 903
BspCNI	CTCAG	2 cut(s)	720, 952
BspFNI	CGCG	1 cut(s)	907
BspLI	GGNNCC	4 cut(s)	34, 193, 526, 903
BspPI	GGATC	1 cut(s)	611
BspT107I	GGYRCC	2 cut(s)	32, 191
BsrI	ACTGG	1 cut(s)	953
BssECI	CCNNGG	3 cut(s)	215, 255, 842
BssMI	GATC	1 cut(s)	616
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	255
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	3 cut(s)	217, 651, 844
Bst4CI	ACNGT	1 cut(s)	580
Bst6I	CTCTTC	4 cut(s)	47, 134, 815, 891
BstBAI	YACGTR	1 cut(s)	478
BstC8I	GCNNGC	6 cut(s)	187, 285, 343, 574, 744, 905
BstDEI	CTNAG	3 cut(s)	347, 707, 960
BstF5I	GGATG	5 cut(s)	343, 428, 493, 796, 840
BstFNI	CGCG	1 cut(s)	907
BstKTI	GATC	1 cut(s)	619
BstMAI	GTCTC	2 cut(s)	807, 939
BstMBI	GATC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	3 cut(s)	217, 651, 844
BstSCI	CCNGG	3 cut(s)	215, 649, 842
BstSLI	GKGCMC	2 cut(s)	210, 905
BstUI	CGCG	1 cut(s)	907
BstV1I	GCAGC	1 cut(s)	556
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BsuRI	GGCC	3 cut(s)	220, 749, 903
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	5 cut(s)	343, 428, 493, 796, 840
BtsI	GCAGTG	2 cut(s)	139, 731
BtsIMutI	CAGTG	4 cut(s)	139, 585, 715, 731
Cac8I	GCNNGC	6 cut(s)	187, 285, 343, 574, 744, 905
Cfr13I	GGNCC	2 cut(s)	901, 902
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	2 cut(s)	322, 787
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	3 cut(s)	347, 707, 960
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
EaeI	YGGCCR	2 cut(s)	218, 747
Eam1104I	CTCTTC	4 cut(s)	47, 134, 815, 891
EarI	CTCTTC	4 cut(s)	47, 134, 815, 891
EciI	GGCGGA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	905
Eco57I	CTGAAG	2 cut(s)	269, 582
EcoO109I	RGGNCCY	1 cut(s)	901
EcoRI	GAATTC	1 cut(s)	451
EcoRII	CCWGG	3 cut(s)	215, 649, 842
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	905
ErhI	CCWWGG	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	807
FaeI	CATG	2 cut(s)	325, 790
FaiI	YATR	9 cut(s)	315, 323, 543, 587, 609, 665, 788, 875, 920
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	2 cut(s)	411, 825
FatI	CATG	2 cut(s)	321, 786
FauI	CCCGC	3 cut(s)	143, 581, 912
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	7 cut(s)	156, 190, 278, 281, 567, 570, 747
FokI	GGATG	5 cut(s)	350, 435, 500, 803, 847
FriOI	GRGCYC	1 cut(s)	905
Fsp4HI	GCNGC	7 cut(s)	156, 190, 278, 281, 567, 570, 747
FspBI	CTAG	2 cut(s)	614, 884
GluI	GCNGC	7 cut(s)	156, 190, 278, 281, 567, 570, 747
HaeIII	GGCC	3 cut(s)	220, 749, 903
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	2 cut(s)	325, 790
HincII	GTYRAC	2 cut(s)	241, 724
HindII	GTYRAC	2 cut(s)	241, 724
HinfI	GANTC	2 cut(s)	325, 557
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	2 cut(s)	172, 935
Hpy166II	GTNNAC	3 cut(s)	208, 241, 724
Hpy188I	TCNGA	4 cut(s)	562, 762, 858, 961
Hpy188III	TCNNGA	3 cut(s)	359, 456, 884
Hpy8I	GTNNAC	3 cut(s)	208, 241, 724
Hpy99I	CGWCG	3 cut(s)	173, 242, 245
HpyAV	CCTTC	5 cut(s)	93, 115, 187, 328, 485
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	5 cut(s)	208, 513, 611, 677, 849
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	3 cut(s)	347, 707, 960
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	2 cut(s)	325, 790
Kzo9I	GATC	1 cut(s)	616
LmnI	GCTCC	1 cut(s)	149
Lsp1109I	GCAGC	1 cut(s)	556
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	2 cut(s)	614, 884
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	3 cut(s)	302, 359, 530
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MboII	GAAGA	7 cut(s)	34, 121, 262, 749, 775, 832, 908
MflI	RGATCY	1 cut(s)	616
MhlI	GDGCHC	2 cut(s)	210, 905
MluCI	AATT	2 cut(s)	451, 850
MseI	TTAA	2 cut(s)	552, 599
MspA1I	CMGCKG	3 cut(s)	189, 569, 719
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	3 cut(s)	217, 651, 844
MvaI	CCWGG	3 cut(s)	217, 651, 844
MvnI	CGCG	1 cut(s)	907
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	1 cut(s)	616
NlaIII	CATG	2 cut(s)	325, 790
NlaIV	GGNNCC	4 cut(s)	34, 193, 526, 903
NmuCI	GTSAC	3 cut(s)	302, 359, 530
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	325, 557
PflFI	GACNNNGTC	1 cut(s)	950
PkrI	GCNGC	7 cut(s)	157, 191, 279, 282, 568, 571, 748
Ppu21I	YACGTR	1 cut(s)	478
PshBI	ATTAAT	1 cut(s)	599
Psp6I	CCWGG	3 cut(s)	215, 649, 842
PspGI	CCWGG	3 cut(s)	215, 649, 842
PspN4I	GGNNCC	4 cut(s)	34, 193, 526, 903
PspOMI	GGGCCC	1 cut(s)	901
PspPI	GGNCC	2 cut(s)	901, 902
PsuI	RGATCY	1 cut(s)	616
PsyI	GACNNNGTC	1 cut(s)	950
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SalI	GTCGAC	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	552, 599
SatI	GCNGC	7 cut(s)	156, 190, 278, 281, 567, 570, 747
Sau3AI	GATC	1 cut(s)	616
Sau96I	GGNCC	2 cut(s)	901, 902
ScrFI	CCNGG	3 cut(s)	217, 651, 844
SduI	GDGCHC	2 cut(s)	210, 905
SfaNI	GCATC	1 cut(s)	328
SgrDI	CGTCGACG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	451, 850
SspI	AATATT	1 cut(s)	597
SspMI	CTAG	2 cut(s)	614, 884
StyD4I	CCNGG	3 cut(s)	215, 649, 842
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	580
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	2 cut(s)	171, 240
TasI	AATT	2 cut(s)	451, 850
TauI	GCSGC	6 cut(s)	158, 192, 280, 283, 569, 749
TfiI	GAWTC	2 cut(s)	325, 557
Tru1I	TTAA	2 cut(s)	552, 599
Tru9I	TTAA	2 cut(s)	552, 599
TscAI	CASTG	4 cut(s)	146, 585, 715, 738
TseFI	GTSAC	3 cut(s)	302, 359, 530
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	3 cut(s)	302, 359, 530
TspDTI	ATGAA	7 cut(s)	10, 256, 338, 504, 775, 833, 950
TspGWI	ACGGA	2 cut(s)	157, 332
TspRI	CASTG	4 cut(s)	146, 585, 715, 738
Tth111I	GACNNNGTC	1 cut(s)	950
VneI	GTGCAC	1 cut(s)	206
VspI	ATTAAT	1 cut(s)	599
XapI	RAATTY	1 cut(s)	451
XbaI	TCTAGA	1 cut(s)	883
XmiI	GTMKAC	1 cut(s)	240
XspI	CTAG	2 cut(s)	614, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.