Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014842.1

Orthogroup ID

OG0006886

Physical Location & Seq

Genomic Coordinates Forward (+)

48153 .. 51225

Gene Structure 3073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014842.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

atgtcctctgcttccaagttcattcgcttcggcaccgccctcttccattttcccaaaccaactctctctcctcctccctctccttccctcctccctctcaaacccttcgccacctcacaatctctcctcttctcccgccactgctcctcctccgccgcagtcgcctccgtcgataccttcaccgccagtggcaccgaagcccccgtgcaccacccctggccggagtgggtggctttcgtcgacgggctgaagaccaagggctacttcatcaaaacgccgccgcctgcggaggacggcgagagtgacggcgtttatacggacatgaatcagttgaaggatgcttgccttagctttgctcgtgaccgctttgatgttttcaaatcattgtctgtggcagacattcaagcacttgtggagggtggatgtcccaatctgttgcgaaaagctgtgaattcaggaaagcgattgagattgtacgtgaagctggatgaaggcgatgtttgtggtggttgcaatctgcgaggttcctgtgacagagcttatgttgttcttaatgaatctgaagccgctgcccgcacagtggatatagtgcgaatattaatgtattatgcactagatccactcgttatttctgggcaagagaaacctcctggcagagagcttacagaaacatctgcaagaaaactgctgtccaagttgcttcaactcagtgaaacagctgttgacccatcactgccaatgcctgcggccaaagttcttccgaagaaaaaaccatctgtaagtttcatggatgatgagccgtctcaaactgctgaaatgaagagaggagattggatgtgtcccaggtgcaattttctgaacttcgctaaaaatataagatgtctagagtgtaaagaagagggtccgcgaaaagttgatatgggtgatgttgaaatgaaaaaaggagactgggtctgctctgagtgcaatttcatgaacttcgctagaaattttcgctgcctaaagtgcaaaactcaagggccaaagagacccggtgtagatgatgtcaaaatgaagaaaggagactggaactgcccacagtgtgggttcatgaattttgcaagcaaaaggaattgtttgcgctgtgaagaggtacggcccaagataaaccctggagattgggactgtccctcatgtaatttcatgaattatgggagaaacacagaatgcctgaagtgtaaatgtgaacgccctgaaggagaaactacagtataccctaagaagaaactacataccgaatatgaggagcaaatatggaggcgtcctcgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03022 ko05202 map03022 map05202

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

436

Amino Acids

48.92

Weight (kDa)

8.71

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48570
fragaria_vesca	FvH4_5g17400 FvH4_5g17400 FvH4_5g17400 FvH4_5g17400
malus_domestica	MD06G1227200.v1.1 MD14G1236700.v1.1
prunus_persica	Prupe.5G233800_v2.0.a1 Prupe.5G233800_v2.0.a1
pyrus_communis	pycom06g20370 pycom14g19770
rosa_chinensis	RchiOBHm_Chr7g0178341
rosa_laevigata	RLG00000005454
rosa_multiflora	Rmu_co8220688.1_g000001 Rmu_sc0014842.1_g000010 Rmu_sc0028437.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229690 Rroxscaffold_3G00275000
rosa_rugosa	Rorug06G0416100
rosa_samantha	Rh7AG014900 Rh7BG014400 Rh7CG014400 Rh7CG435500 Rh7DG014700
rosa_wichuraiana	Rw0G010220 Rw7G001180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	32, 191
AccB7I	CCANNNNNTGG	1 cut(s)	1082
AccI	GTMKAC	2 cut(s)	240, 1251
AccII	CGCG	1 cut(s)	907
AclWI	GGATC	1 cut(s)	611
AcoI	YGGCCR	2 cut(s)	218, 747
AcsI	RAATTY	3 cut(s)	451, 988, 1093
AcuI	CTGAAG	4 cut(s)	269, 582, 1232, 1254
AcyI	GRCGYC	1 cut(s)	1300
AdeI	CACNNNGTG	1 cut(s)	1082
AfaI	GTAC	2 cut(s)	476, 1134
AfiI	CCNNNNNNNGG	3 cut(s)	220, 580, 1082
AgsI	TTSAA	5 cut(s)	334, 379, 404, 704, 932
AjnI	CCWGG	4 cut(s)	215, 649, 842, 1150
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AluBI	AGCT	6 cut(s)	351, 446, 484, 539, 661, 719
AluI	AGCT	6 cut(s)	351, 446, 484, 539, 661, 719
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	4 cut(s)	807, 939, 1021, 1056
Alw44I	GTGCAC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	611
AoxI	GGCC	4 cut(s)	218, 747, 1019, 1136
ApaLI	GTGCAC	1 cut(s)	206
ApeKI	GCWGC	2 cut(s)	569, 996
ApoI	RAATTY	3 cut(s)	451, 988, 1093
AseI	ATTAAT	1 cut(s)	599
AspLEI	GCGC	1 cut(s)	1122
AspS9I	GGNCC	3 cut(s)	902, 1019, 1137
AsuC2I	CCSGG	1 cut(s)	1032
AsuHPI	GGTGA	2 cut(s)	172, 935
AvaII	GGWCC	1 cut(s)	902
BaeGI	GKGCMC	1 cut(s)	210
BanI	GGYRCC	2 cut(s)	32, 191
BauI	CACGAG	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	556, 983
BccI	CCATC	2 cut(s)	736, 781
BceAI	ACGGC	4 cut(s)	310, 322, 784, 1151
BciT130I	CCWGG	4 cut(s)	217, 651, 844, 1152
BcnI	CCSGG	1 cut(s)	1032
BcoDI	GTCTC	4 cut(s)	807, 939, 1021, 1056
BfaI	CTAG	4 cut(s)	614, 884, 984, 1309
BfmI	CTRYAG	1 cut(s)	1245
BisI	GCNGC	7 cut(s)	156, 278, 281, 567, 570, 747, 997
BlsI	GCNGC	7 cut(s)	157, 279, 282, 568, 571, 748, 998
Bme1390I	CCNGG	5 cut(s)	217, 651, 844, 1032, 1152
Bme18I	GGWCC	1 cut(s)	902
BmgT120I	GGNCC	3 cut(s)	902, 1019, 1137
BmiI	GGNNCC	4 cut(s)	34, 193, 526, 903
BmrFI	CCNGG	5 cut(s)	217, 651, 844, 1032, 1152
BmrI	ACTGGG	1 cut(s)	958
BmsI	GCATC	1 cut(s)	328
BmuI	ACTGGG	1 cut(s)	958
BpiI	GAAGAC	1 cut(s)	257
BplI	GAGNNNNNCTC	1 cut(s)	1288
BpmI	CTGGAG	1 cut(s)	1173
Bpu10I	CCTNAGC	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	999
BpuMI	CCSGG	1 cut(s)	1032
BsaAI	YACGTR	1 cut(s)	478
BsaHI	GRCGYC	1 cut(s)	1300
BsaI	GGTCTC	1 cut(s)	1021
BsaJI	CCNNGG	4 cut(s)	215, 255, 842, 1150
BsaXI	ACNNNNNCTCC	8 cut(s)	52, 82, 108, 131, 138, 161, 936, 966
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 580, 1082
Bse1I	ACTGG	3 cut(s)	186, 953, 1070
BseBI	CCWGG	4 cut(s)	217, 651, 844, 1152
BseDI	CCNNGG	4 cut(s)	215, 255, 842, 1150
BseGI	GGATG	5 cut(s)	343, 428, 493, 796, 840
BseLI	CCNNNNNNNGG	3 cut(s)	220, 580, 1082
BseMII	CTCAG	2 cut(s)	721, 951
BseNI	ACTGG	3 cut(s)	186, 953, 1070
BseRI	GAGGAG	8 cut(s)	60, 63, 80, 116, 136, 139, 840, 1298
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	2 cut(s)	556, 983
Bsh1236I	CGCG	1 cut(s)	907
BshFI	GGCC	4 cut(s)	220, 749, 1021, 1138
BshNI	GGYRCC	2 cut(s)	32, 191
BsiHKAI	GWGCWC	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	221, 1032
BslFI	GGGAC	4 cut(s)	411, 825, 1152, 1175
BslI	CCNNNNNNNGG	3 cut(s)	220, 580, 1082
BsmAI	GTCTC	4 cut(s)	807, 939, 1021, 1056
BsmBI	CGTCTC	1 cut(s)	807
BsmFI	GGGAC	4 cut(s)	411, 825, 1152, 1175
BsmI	GAATGC	1 cut(s)	1211
BsnI	GGCC	4 cut(s)	220, 749, 1021, 1138
Bso31I	GGTCTC	1 cut(s)	1021
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	616
BspANI	GGCC	4 cut(s)	220, 749, 1021, 1138
BspCNI	CTCAG	2 cut(s)	720, 952
BspFNI	CGCG	1 cut(s)	907
BspHI	TCATGA	3 cut(s)	972, 1089, 1182
BspLI	GGNNCC	4 cut(s)	34, 193, 526, 903
BspPI	GGATC	1 cut(s)	611
BspT107I	GGYRCC	2 cut(s)	32, 191
BspTNI	GGTCTC	1 cut(s)	1021
BsrI	ACTGG	3 cut(s)	186, 953, 1070
BssECI	CCNNGG	4 cut(s)	215, 255, 842, 1150
BssMI	GATC	1 cut(s)	616
BssNAI	GTATAC	1 cut(s)	1252
BssNI	GRCGYC	1 cut(s)	1300
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	255
Bst1107I	GTATAC	1 cut(s)	1252
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	4 cut(s)	217, 651, 844, 1152
Bst4CI	ACNGT	4 cut(s)	580, 1080, 1166, 1249
Bst6I	CTCTTC	5 cut(s)	47, 134, 815, 891, 1122
BstACI	GRCGYC	1 cut(s)	1300
BstBAI	YACGTR	1 cut(s)	478
BstC8I	GCNNGC	5 cut(s)	285, 343, 574, 744, 1102
BstDEI	CTNAG	4 cut(s)	347, 707, 960, 1257
BstF5I	GGATG	5 cut(s)	343, 428, 493, 796, 840
BstFNI	CGCG	1 cut(s)	907
BstHHI	GCGC	1 cut(s)	1122
BstKTI	GATC	1 cut(s)	619
BstMAI	GTCTC	4 cut(s)	807, 939, 1021, 1056
BstMBI	GATC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 963, 1005
BstNI	CCWGG	4 cut(s)	217, 651, 844, 1152
BstSCI	CCNGG	5 cut(s)	215, 649, 842, 1030, 1150
BstSFI	CTRYAG	1 cut(s)	1245
BstSLI	GKGCMC	1 cut(s)	210
BstUI	CGCG	1 cut(s)	907
BstV1I	GCAGC	2 cut(s)	556, 983
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BstZ17I	GTATAC	1 cut(s)	1252
BsuRI	GGCC	4 cut(s)	220, 749, 1021, 1138
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	5 cut(s)	343, 428, 493, 796, 840
BtsI	GCAGTG	2 cut(s)	139, 731
BtsIMutI	CAGTG	6 cut(s)	139, 193, 585, 715, 731, 1085
Cac8I	GCNNGC	5 cut(s)	285, 343, 574, 744, 1102
CciI	TCATGA	3 cut(s)	972, 1089, 1182
CfoI	GCGC	1 cut(s)	1122
Cfr13I	GGNCC	3 cut(s)	902, 1019, 1137
CseI	GACGC	1 cut(s)	1289
Csp6I	GTAC	2 cut(s)	475, 1133
CviAII	CATG	6 cut(s)	322, 787, 973, 1090, 1173, 1183
CviQI	GTAC	2 cut(s)	475, 1133
DdeI	CTNAG	4 cut(s)	347, 707, 960, 1257
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
DraIII	CACNNNGTG	1 cut(s)	1082
EaeI	YGGCCR	2 cut(s)	218, 747
Eam1104I	CTCTTC	5 cut(s)	47, 134, 815, 891, 1122
EarI	CTCTTC	5 cut(s)	47, 134, 815, 891, 1122
EciI	GGCGGA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	1021
Eco47I	GGWCC	1 cut(s)	902
Eco57I	CTGAAG	4 cut(s)	269, 582, 1232, 1254
EcoRI	GAATTC	1 cut(s)	451
EcoRII	CCWGG	4 cut(s)	215, 649, 842, 1150
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	807
FaeI	CATG	6 cut(s)	325, 790, 976, 1093, 1176, 1186
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	4 cut(s)	411, 825, 1152, 1175
FatI	CATG	6 cut(s)	321, 786, 972, 1089, 1172, 1182
FauI	CCCGC	2 cut(s)	143, 581
FblI	GTMKAC	2 cut(s)	240, 1251
Fnu4HI	GCNGC	7 cut(s)	156, 278, 281, 567, 570, 747, 997
FokI	GGATG	5 cut(s)	350, 435, 500, 803, 847
Fsp4HI	GCNGC	7 cut(s)	156, 278, 281, 567, 570, 747, 997
FspBI	CTAG	4 cut(s)	614, 884, 984, 1309
GlaI	GCGC	1 cut(s)	1121
GluI	GCNGC	7 cut(s)	156, 278, 281, 567, 570, 747, 997
GsuI	CTGGAG	1 cut(s)	1173
HaeIII	GGCC	4 cut(s)	220, 749, 1021, 1138
HapII	CCGG	2 cut(s)	221, 1032
HgaI	GACGC	1 cut(s)	1289
HhaI	GCGC	1 cut(s)	1122
Hin1I	GRCGYC	1 cut(s)	1300
Hin1II	CATG	6 cut(s)	325, 790, 976, 1093, 1176, 1186
Hin6I	GCGC	1 cut(s)	1120
HinP1I	GCGC	1 cut(s)	1120
HincII	GTYRAC	2 cut(s)	241, 724
HindII	GTYRAC	2 cut(s)	241, 724
HinfI	GANTC	2 cut(s)	325, 557
HpaII	CCGG	2 cut(s)	221, 1032
HphI	GGTGA	2 cut(s)	172, 935
Hpy166II	GTNNAC	5 cut(s)	208, 241, 724, 1226, 1252
Hpy188I	TCNGA	4 cut(s)	562, 762, 858, 961
Hpy188III	TCNNGA	6 cut(s)	359, 456, 884, 973, 1090, 1183
Hpy8I	GTNNAC	5 cut(s)	208, 241, 724, 1226, 1252
Hpy99I	CGWCG	3 cut(s)	173, 242, 245
HpyAV	CCTTC	6 cut(s)	93, 115, 187, 328, 485, 1229
HpyCH4III	ACNGT	4 cut(s)	580, 1080, 1166, 1249
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	8 cut(s)	208, 513, 611, 677, 849, 966, 1008, 1100
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 963, 1005
HpyF3I	CTNAG	4 cut(s)	347, 707, 960, 1257
HpySE526I	ACGT	1 cut(s)	477
Hsp92I	GRCGYC	1 cut(s)	1300
Hsp92II	CATG	6 cut(s)	325, 790, 976, 1093, 1176, 1186
HspAI	GCGC	1 cut(s)	1120
Kzo9I	GATC	1 cut(s)	616
LmnI	GCTCC	2 cut(s)	149, 1285
Lsp1109I	GCAGC	2 cut(s)	556, 983
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	4 cut(s)	614, 884, 984, 1309
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	3 cut(s)	302, 359, 530
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MflI	RGATCY	1 cut(s)	616
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	8 cut(s)	451, 850, 967, 988, 1093, 1111, 1177, 1186
MseI	TTAA	2 cut(s)	552, 599
MspA1I	CMGCKG	2 cut(s)	569, 719
MspI	CCGG	2 cut(s)	221, 1032
MspR9I	CCNGG	5 cut(s)	217, 651, 844, 1032, 1152
Mva1269I	GAATGC	1 cut(s)	1211
MvaI	CCWGG	4 cut(s)	217, 651, 844, 1152
MvnI	CGCG	1 cut(s)	907
MwoI	GCNNNNNNNGC	3 cut(s)	161, 963, 1005
NciI	CCSGG	1 cut(s)	1032
NdeII	GATC	1 cut(s)	616
NlaIII	CATG	6 cut(s)	325, 790, 976, 1093, 1176, 1186
NlaIV	GGNNCC	4 cut(s)	34, 193, 526, 903
NmuCI	GTSAC	3 cut(s)	302, 359, 530
PagI	TCATGA	3 cut(s)	972, 1089, 1182
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PctI	GAATGC	1 cut(s)	1211
PfeI	GAWTC	2 cut(s)	325, 557
PflFI	GACNNNGTC	1 cut(s)	950
PflMI	CCANNNNNTGG	1 cut(s)	1082
PkrI	GCNGC	7 cut(s)	157, 279, 282, 568, 571, 748, 998
Ppu21I	YACGTR	1 cut(s)	478
PshBI	ATTAAT	1 cut(s)	599
Psp6I	CCWGG	4 cut(s)	215, 649, 842, 1150
PspGI	CCWGG	4 cut(s)	215, 649, 842, 1150
PspN4I	GGNNCC	4 cut(s)	34, 193, 526, 903
PspPI	GGNCC	3 cut(s)	902, 1019, 1137
PsuI	RGATCY	1 cut(s)	616
PsyI	GACNNNGTC	1 cut(s)	950
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	2 cut(s)	476, 1134
RsaNI	GTAC	2 cut(s)	475, 1133
SalI	GTCGAC	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	552, 599
SatI	GCNGC	7 cut(s)	156, 278, 281, 567, 570, 747, 997
Sau3AI	GATC	1 cut(s)	616
Sau96I	GGNCC	3 cut(s)	902, 1019, 1137
ScrFI	CCNGG	5 cut(s)	217, 651, 844, 1032, 1152
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	1245
SgrDI	CGTCGACG	1 cut(s)	239
SinI	GGWCC	1 cut(s)	902
SmlI	CTYRAG	1 cut(s)	1014
SmoI	CTYRAG	1 cut(s)	1014
Sse9I	AATT	8 cut(s)	451, 850, 967, 988, 1093, 1111, 1177, 1186
SspI	AATATT	1 cut(s)	597
SspMI	CTAG	4 cut(s)	614, 884, 984, 1309
StyD4I	CCNGG	5 cut(s)	215, 649, 842, 1030, 1150
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	4 cut(s)	580, 1080, 1166, 1249
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	2 cut(s)	171, 240
TasI	AATT	8 cut(s)	451, 850, 967, 988, 1093, 1111, 1177, 1186
TauI	GCSGC	5 cut(s)	158, 280, 283, 569, 749
TfiI	GAWTC	2 cut(s)	325, 557
Tru1I	TTAA	2 cut(s)	552, 599
Tru9I	TTAA	2 cut(s)	552, 599
TscAI	CASTG	6 cut(s)	146, 193, 585, 715, 738, 1085
TseFI	GTSAC	3 cut(s)	302, 359, 530
TseI	GCWGC	2 cut(s)	569, 996
Tsp45I	GTSAC	3 cut(s)	302, 359, 530
TspGWI	ACGGA	2 cut(s)	157, 332
TspRI	CASTG	6 cut(s)	146, 193, 585, 715, 738, 1085
Tth111I	GACNNNGTC	1 cut(s)	950
Van91I	CCANNNNNTGG	1 cut(s)	1082
VneI	GTGCAC	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	902
VspI	ATTAAT	1 cut(s)	599
XapI	RAATTY	3 cut(s)	451, 988, 1093
XbaI	TCTAGA	1 cut(s)	883
XmiI	GTMKAC	2 cut(s)	240, 1251
XspI	CTAG	4 cut(s)	614, 884, 984, 1309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.