Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006886

Physical Location & Seq

Genomic Coordinates Forward (+)

57000362 .. 57000682

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG435500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTCCTCTGCTTCCAAGTTCATTCGTTTCGGCACTGCACTCATCCATTTCCCCAGACCAATTTTCTCCCCTCCTCCTCCTTCCTTCCTCTCTCTCAAACCCTCCTCACAGTCTCTTCTCTTCTATCGCCACTGCTCCTCCGCCGCCGCAGTCTCCTCCTTCGATACGGTCACCGCCAGTAGCACCGAAGCCCCTATGCACCACCCATGGCCGGAGTGGGTGGCATTCGTTGACGGGTTGAAGACCAATGGCTACTTCATCAAACCGTCGCCGCCTGCGGAGGATAGGAAGATCGAGCGCTGCAGTGATGGAGTGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03022 ko05202 map03022 map05202

Pfam Domains

Protein Families

zf-RanBP

Protein Analysis

106

Amino Acids

11.74

Weight (kDa)

8.71

Isoelectric Point (pI)

59.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48570
fragaria_vesca	FvH4_5g17400 FvH4_5g17400 FvH4_5g17400 FvH4_5g17400
malus_domestica	MD06G1227200.v1.1 MD14G1236700.v1.1
prunus_persica	Prupe.5G233800_v2.0.a1 Prupe.5G233800_v2.0.a1
pyrus_communis	pycom06g20370 pycom14g19770
rosa_chinensis	RchiOBHm_Chr7g0178341
rosa_laevigata	RLG00000005454
rosa_multiflora	Rmu_co8220688.1_g000001 Rmu_sc0014842.1_g000010 Rmu_sc0028437.1_g000001
rosa_roxburghii	Rroxscaffold_3G00229690 Rroxscaffold_3G00275000
rosa_rugosa	Rorug06G0416100
rosa_samantha	Rh7AG014900 Rh7BG014400 Rh7CG014400 Rh7CG435500 Rh7DG014700
rosa_wichuraiana	Rw0G010220 Rw7G001180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	141, 144, 147, 174, 272, 278
AcoI	YGGCCR	1 cut(s)	209
AfeI	AGCGCT	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	241
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
Alw26I	GTCTC	2 cut(s)	117, 157
Aor51HI	AGCGCT	1 cut(s)	299
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	300
AsuHPI	GGTGA	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	117, 157
BfmI	CTRYAG	1 cut(s)	301
BfoI	RGCGCY	1 cut(s)	301
BisI	GCNGC	4 cut(s)	144, 147, 272, 301
BlsI	GCNGC	4 cut(s)	145, 148, 273, 302
BpiI	GAAGAC	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseNI	ACTGG	1 cut(s)	177
BseRI	GAGGAG	5 cut(s)	63, 66, 94, 127, 145
BseXI	GCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	2 cut(s)	117, 157
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	291
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	6 cut(s)	141, 144, 147, 174, 272, 278
BspANI	GGCC	1 cut(s)	211
BspMAI	CTGCAG	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	206
Bst4CI	ACNGT	3 cut(s)	111, 169, 267
Bst6I	CTCTTC	2 cut(s)	120, 125
BstC8I	GCNNGC	1 cut(s)	276
BstDSI	CCRYGG	1 cut(s)	206
BstEII	GGTNACC	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	2 cut(s)	117, 157
BstMBI	GATC	1 cut(s)	291
BstPI	GGTNACC	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	287
BstV2I	GAAGAC	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	211
BtgI	CCRYGG	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	42
BtsI	GCAGTG	3 cut(s)	33, 130, 310
BtsIMutI	CAGTG	3 cut(s)	33, 130, 310
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	1 cut(s)	300
CviAII	CATG	1 cut(s)	207
CviJI	RGCY	3 cut(s)	191, 211, 252
CviKI_1	RGCY	3 cut(s)	191, 211, 252
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
EaeI	YGGCCR	1 cut(s)	209
Eam1104I	CTCTTC	2 cut(s)	120, 125
EarI	CTCTTC	2 cut(s)	120, 125
EciI	GGCGGA	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	206
Eco47III	AGCGCT	1 cut(s)	299
Eco91I	GGTNACC	1 cut(s)	169
EcoO65I	GGTNACC	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	1 cut(s)	210
FaiI	YATR	2 cut(s)	197, 208
FatI	CATG	1 cut(s)	206
Fnu4HI	GCNGC	4 cut(s)	144, 147, 272, 301
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	4 cut(s)	144, 147, 272, 301
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	4 cut(s)	144, 147, 272, 301
HaeII	RGCGCY	1 cut(s)	301
HaeIII	GGCC	1 cut(s)	211
HapII	CCGG	1 cut(s)	212
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	210
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	232
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	271
HpyAV	CCTTC	3 cut(s)	90, 94, 169
HpyCH4III	ACNGT	3 cut(s)	111, 169, 267
HpyCH4V	TGCA	3 cut(s)	38, 199, 303
Hsp92II	CATG	1 cut(s)	210
HspAI	GCGC	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	4 cut(s)	67, 190, 225, 288
Lsp1109I	GCAGC	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	4 cut(s)	107, 112, 253, 301
MluCI	AATT	1 cut(s)	60
MspI	CCGG	1 cut(s)	212
Mva1269I	GAATGC	1 cut(s)	224
NcoI	CCATGG	1 cut(s)	206
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	169
PctI	GAATGC	1 cut(s)	224
PkrI	GCNGC	4 cut(s)	145, 148, 273, 302
PspEI	GGTNACC	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	305
SatI	GCNGC	4 cut(s)	144, 147, 272, 301
Sau3AI	GATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	301
SgeI	CNNG	8 cut(s)	28, 66, 189, 219, 224, 247, 287, 307
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	6 cut(s)	141, 144, 147, 174, 272, 278
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	3 cut(s)	111, 169, 267
TaqI	TCGA	2 cut(s)	162, 294
TasI	AATT	1 cut(s)	60
TauI	GCSGC	3 cut(s)	146, 149, 274
TscAI	CASTG	3 cut(s)	40, 137, 310
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	300
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	2 cut(s)	10, 247
TspRI	CASTG	3 cut(s)	40, 137, 310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.