pycom06g20370

Zinc finger protein VAR3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0006886
Physical Location & Seq
Forward (+)
23439693 .. 23442296
2604 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g20370.1

Sequence Viewer

Length: 1269 bp
ATGTCAGCTGCTTCAAAACTCATGCGTTTTGGGACCTCACTCTTCCACGCTCCCGCAAGAACTCTCTCTCCTCCTATCCCTTCACTTCTCTCTCTGAAGCCCTTCGCCGCCGGACTGCGCTTCCCCCGGTACGCCACCTCTTCGGATGCAATTGAAAGTATTGACACCGTCCCAGCCAACAGCACAGAAGCGCCGCCGCCGCACCACCCCTGGCCCGAGTGGGTGGCCTTCGTCGACCGCTTGAAGGCCAAGGGGTACTTCACCGGAACGCCGCCGAAGGAGAGCGATGTTTACACGGATATAAATGAAGTAAAGGAGGCCTCTTTCAGCTTTGCTCGTGACCGATATGATGTTTTCAAATCGTTATCTATGGAAGATATTCAAGTAGTTGTGGAGGGTGGATGTCCCAATCTTTTCCGGAAAGCTGTGAATTCAGCAAAAAGATTGAGATTCCATGTGAGACTAGATGAAGGAGAGGTTTGCGGTGGTTGTAATCTCCGAGGTTCCTGCGATAGAGCTTATGTGATTCTTAAGGAATCTGAAGCAGCAGCACGTACAGTGGATATAGTGCGAATACTATTGTTTTATGCTCTGGATCCCGTTGTTTTTTATGAGGGAGAGAAACCGCCTGGTAGCGAGCTTCTAGAAACATCTGCAAGGAAGCTGCTTTCTGAGTTGCTTCAACTCAGCGAAACGGCTGTTGACCCATCACTTCCAAAGCCTGCTGCCAAAGCTATTGAGAAGAAGAAAAATTATCCAAGTTTCATTGGTGATGAACTATCTCAAGATGTTGAAATGAAGAGAGGAGATTGGATGTGTCCCAAGTGCAGTTTTATGAACTTTGCTAAAAATTTAAGATGCCTACAATGTAAAGAAGATGGCCCAAGAAAAGCTGATGCGGGTGATCTCGAAATCGAAATGAAAAAGGGTGACTGGGTCTGCACTGAATGCAGTTTCATGAACTTCTCTAGAAATATACGCTGCCTAAAGTGCAAAGCTGAAGGGCCAAAAAGAGTCGGTACAGTTGCAGTTGAAATGAAGAAAGGAGACTGGACTTGCCCAAAGTGTGCATTCATGAATTTCGCAAGCAATAGGAAGTGTTTGCGTTGTCAAGATCAACGGCCCAAGAAAAATGCTGCAGACTGGGACTGCCCCTCATGTGATTTCATGAATTATGGTAGAAACGCAGTTTGCCTGAAGTGCAACTGTAAACGCCCTCAAGAAGAAACTACTGAGTACGAGGAGCACATGTGGAGGCGTCCACGCTAG

Protein Analysis

423

Amino Acids

47.63

Weight (kDa)

8.55

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 268 - 291 6.1e-08 Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP PF00641 308 - 336 3.5e-08 Zn-finger in Ran binding protein and others
Zn_ribbon_RanBP PF00641 347 - 371 3.6e-09 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 234
AccIII TCCGGA 1 cut(s) 417
AclWI GGATC 2 cut(s) 590, 603
AcsI RAATTY 3 cut(s) 430, 850, 1078
AcuI CTGAAG 4 cut(s) 116, 561, 1020, 1217
AcyI GRCGYC 1 cut(s) 1258
AfaI GTAC 5 cut(s) 131, 257, 556, 1021, 1238
AfiI CCNNNNNNNGG 1 cut(s) 244
AflII CTTAAG 1 cut(s) 530
AflIII ACRYGT 1 cut(s) 1248
AgsI TTSAA 8 cut(s) 15, 155, 244, 358, 383, 683, 794, 1034
AjnI CCWGG 2 cut(s) 209, 628
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AloI GAACNNNNNNTCC 2 cut(s) 52, 84
AluBI AGCT 9 cut(s) 8, 330, 425, 518, 640, 664, 734, 893, 998
AluI AGCT 9 cut(s) 8, 330, 425, 518, 640, 664, 734, 893, 998
Alw21I GWGCWC 1 cut(s) 1248
Alw26I GTCTC 2 cut(s) 454, 1041
AlwI GGATC 2 cut(s) 590, 603
Ama87I CYCGRG 1 cut(s) 215
Aor13HI TCCGGA 1 cut(s) 417
AoxI GGCC 7 cut(s) 212, 225, 246, 318, 880, 1004, 1121
ApeKI GCWGC 7 cut(s) 8, 545, 548, 664, 725, 981, 1136
ApoI RAATTY 3 cut(s) 430, 850, 1078
Asp700I GAANNNNTTC 2 cut(s) 101, 378
AspLEI GCGC 2 cut(s) 120, 193
AspS9I GGNCC 5 cut(s) 33, 213, 881, 1004, 1122
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 4 cut(s) 253, 782, 914, 941
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 1 cut(s) 33
BamHI GGATCC 1 cut(s) 595
BauI CACGAG 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 1248
BbvI GCAGC 6 cut(s) 557, 560, 651, 712, 968, 1123
BccI CCATC 2 cut(s) 715, 872
BceAI ACGGC 2 cut(s) 711, 1136
BcgI CGANNNNNNTGC 2 cut(s) 489, 523
BciT130I CCWGG 2 cut(s) 211, 630
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 454, 1041
BfaI CTAG 4 cut(s) 464, 644, 969, 1267
BfmI CTRYAG 1 cut(s) 1137
BfoI RGCGCY 1 cut(s) 194
BfrI CTTAAG 1 cut(s) 530
Bme1390I CCNGG 3 cut(s) 127, 211, 630
Bme18I GGWCC 1 cut(s) 33
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 5 cut(s) 33, 213, 881, 1004, 1122
BmiI GGNNCC 3 cut(s) 34, 505, 597
BmrFI CCNGG 3 cut(s) 127, 211, 630
BmrI ACTGGG 2 cut(s) 943, 1153
BmsI GCATC 3 cut(s) 136, 848, 886
BmuI ACTGGG 2 cut(s) 943, 1153
BpuEI CTTGAG 2 cut(s) 768, 1203
BpuMI CCSGG 1 cut(s) 127
BsaAI YACGTR 1 cut(s) 554
BsaHI GRCGYC 1 cut(s) 1258
BsaJI CCNNGG 4 cut(s) 125, 209, 249, 499
BsaWI WCCGGW 2 cut(s) 263, 417
BsaXI ACNNNNNCTCC 4 cut(s) 52, 82, 1235, 1265
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 3 cut(s) 938, 1055, 1148
BseAI TCCGGA 1 cut(s) 417
BseBI CCWGG 2 cut(s) 211, 630
BseDI CCNNGG 4 cut(s) 125, 209, 249, 499
BseGI GGATG 3 cut(s) 151, 407, 819
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMII CTCAG 3 cut(s) 663, 700, 1224
BseNI ACTGG 3 cut(s) 938, 1055, 1148
BseRI GAGGAG 3 cut(s) 60, 819, 1256
BseXI GCAGC 6 cut(s) 557, 560, 651, 712, 968, 1123
BseYI CCCAGC 1 cut(s) 172
BsgI GTGCAG 2 cut(s) 847, 925
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 7 cut(s) 214, 227, 248, 320, 882, 1006, 1123
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 1248
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 4 cut(s) 111, 127, 264, 418
BslFI GGGAC 5 cut(s) 46, 155, 390, 804, 1160
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 2 cut(s) 454, 1041
BsmFI GGGAC 5 cut(s) 46, 155, 390, 804, 1160
BsmI GAATGC 2 cut(s) 953, 1070
BsnI GGCC 7 cut(s) 214, 227, 248, 320, 882, 1006, 1123
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 1248
Bsp13I TCCGGA 1 cut(s) 417
Bsp143I GATC 3 cut(s) 595, 904, 1114
BspANI GGCC 7 cut(s) 214, 227, 248, 320, 882, 1006, 1123
BspCNI CTCAG 3 cut(s) 664, 699, 1225
BspEI TCCGGA 1 cut(s) 417
BspHI TCATGA 3 cut(s) 957, 1074, 1167
BspLI GGNNCC 3 cut(s) 34, 505, 597
BspMAI CTGCAG 1 cut(s) 1141
BspPI GGATC 2 cut(s) 590, 603
BspTI CTTAAG 1 cut(s) 530
BsrI ACTGG 3 cut(s) 938, 1055, 1148
BssECI CCNNGG 4 cut(s) 125, 209, 249, 499
BssMI GATC 3 cut(s) 595, 904, 1114
BssNI GRCGYC 1 cut(s) 1258
BssSI CACGAG 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 336
Bst2UI CCWGG 2 cut(s) 211, 630
Bst4CI ACNGT 4 cut(s) 169, 559, 1024, 1208
Bst6I CTCTTC 3 cut(s) 47, 145, 794
BstACI GRCGYC 1 cut(s) 1258
BstAFI CTTAAG 1 cut(s) 530
BstAPI GCANNNNNTGC 1 cut(s) 948
BstBAI YACGTR 1 cut(s) 554
BstC8I GCNNGC 3 cut(s) 638, 723, 1087
BstDEI CTNAG 3 cut(s) 672, 686, 1233
BstF5I GGATG 3 cut(s) 151, 407, 819
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 2 cut(s) 120, 193
BstKTI GATC 3 cut(s) 598, 907, 1117
BstMAI GTCTC 2 cut(s) 454, 1041
BstMBI GATC 3 cut(s) 595, 904, 1114
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 5 cut(s) 199, 731, 948, 990, 1200
BstNI CCWGG 2 cut(s) 211, 630
BstNSI RCATGY 1 cut(s) 1252
BstSCI CCNGG 3 cut(s) 125, 209, 628
BstSFI CTRYAG 1 cut(s) 1137
BstV1I GCAGC 6 cut(s) 557, 560, 651, 712, 968, 1123
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BsuRI GGCC 7 cut(s) 214, 227, 248, 320, 882, 1006, 1123
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 3 cut(s) 151, 407, 819
BtsIMutI CAGTG 2 cut(s) 564, 942
Cac8I GCNNGC 3 cut(s) 638, 723, 1087
CciI TCATGA 3 cut(s) 957, 1074, 1167
CfoI GCGC 2 cut(s) 120, 193
Cfr13I GGNCC 5 cut(s) 33, 213, 881, 1004, 1122
CseI GACGC 1 cut(s) 1247
Csp6I GTAC 5 cut(s) 130, 256, 555, 1020, 1237
CviAII CATG 7 cut(s) 22, 455, 958, 1075, 1158, 1168, 1249
CviQI GTAC 5 cut(s) 130, 256, 555, 1020, 1237
DdeI CTNAG 3 cut(s) 672, 686, 1233
DpnI GATC 3 cut(s) 597, 906, 1116
DpnII GATC 3 cut(s) 595, 904, 1114
Eam1104I CTCTTC 3 cut(s) 47, 145, 794
EarI CTCTTC 3 cut(s) 47, 145, 794
Eco130I CCWWGG 1 cut(s) 249
Eco147I AGGCCT 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 33
Eco57I CTGAAG 4 cut(s) 116, 561, 1020, 1217
Eco88I CYCGRG 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 33
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 209, 628
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 7 cut(s) 25, 458, 961, 1078, 1161, 1171, 1252
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 5 cut(s) 46, 155, 390, 804, 1160
FatI CATG 7 cut(s) 21, 454, 957, 1074, 1157, 1167, 1248
FauI CCCGC 2 cut(s) 61, 892
FblI GTMKAC 1 cut(s) 234
FokI GGATG 3 cut(s) 158, 414, 826
FspBI CTAG 4 cut(s) 464, 644, 969, 1267
GlaI GCGC 2 cut(s) 119, 192
GsaI CCCAGC 1 cut(s) 176
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 7 cut(s) 214, 227, 248, 320, 882, 1006, 1123
HapII CCGG 4 cut(s) 111, 127, 264, 418
HgaI GACGC 1 cut(s) 1247
HhaI GCGC 2 cut(s) 120, 193
Hin1I GRCGYC 1 cut(s) 1258
Hin1II CATG 7 cut(s) 25, 458, 961, 1078, 1161, 1171, 1252
Hin6I GCGC 2 cut(s) 118, 191
HinP1I GCGC 2 cut(s) 118, 191
HincII GTYRAC 2 cut(s) 235, 703
HindII GTYRAC 2 cut(s) 235, 703
HinfI GANTC 4 cut(s) 450, 526, 536, 1014
HpaII CCGG 4 cut(s) 111, 127, 264, 418
HphI GGTGA 4 cut(s) 253, 782, 914, 941
Hpy166II GTNNAC 5 cut(s) 235, 292, 703, 1211, 1262
Hpy188I TCNGA 5 cut(s) 96, 145, 500, 541, 673
Hpy8I GTNNAC 5 cut(s) 235, 292, 703, 1211, 1262
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 7 cut(s) 90, 112, 238, 238, 271, 464, 995
HpyCH4III ACNGT 4 cut(s) 169, 559, 1024, 1208
HpyCH4IV ACGT 1 cut(s) 553
HpyF10VI GCNNNNNNNGC 5 cut(s) 199, 731, 948, 990, 1200
HpyF3I CTNAG 3 cut(s) 672, 686, 1233
HpySE526I ACGT 1 cut(s) 553
Hsp92I GRCGYC 1 cut(s) 1258
Hsp92II CATG 7 cut(s) 25, 458, 961, 1078, 1161, 1171, 1252
HspAI GCGC 2 cut(s) 118, 191
Kpn2I TCCGGA 1 cut(s) 417
Kzo9I GATC 3 cut(s) 595, 904, 1114
LmnI GCTCC 2 cut(s) 55, 1243
Lsp1109I GCAGC 6 cut(s) 557, 560, 651, 712, 968, 1123
LweI GCATC 3 cut(s) 136, 848, 886
MaeI CTAG 4 cut(s) 464, 644, 969, 1267
MaeII ACGT 1 cut(s) 553
MaeIII GTNAC 2 cut(s) 338, 929
MalI GATC 3 cut(s) 597, 906, 1116
MboI GATC 3 cut(s) 595, 904, 1114
MboII GAAGA 9 cut(s) 34, 132, 386, 754, 757, 811, 887, 1051, 1235
MfeI CAATTG 1 cut(s) 150
MflI RGATCY 1 cut(s) 595
MhlI GDGCHC 1 cut(s) 1248
MluCI AATT 6 cut(s) 150, 430, 751, 850, 1078, 1171
MlyI GAGTC 1 cut(s) 1023
MroI TCCGGA 1 cut(s) 417
MroXI GAANNNNTTC 2 cut(s) 101, 378
MseI TTAA 2 cut(s) 531, 854
MspA1I CMGCKG 1 cut(s) 8
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 4 cut(s) 111, 127, 264, 418
MspR9I CCNGG 3 cut(s) 127, 211, 630
MunI CAATTG 1 cut(s) 150
Mva1269I GAATGC 2 cut(s) 953, 1070
MvaI CCWGG 2 cut(s) 211, 630
MwoI GCNNNNNNNGC 5 cut(s) 199, 731, 948, 990, 1200
NciI CCSGG 1 cut(s) 127
NdeII GATC 3 cut(s) 595, 904, 1114
NlaIII CATG 7 cut(s) 25, 458, 961, 1078, 1161, 1171, 1252
NlaIV GGNNCC 3 cut(s) 34, 505, 597
NmuCI GTSAC 2 cut(s) 338, 929
NspI RCATGY 1 cut(s) 1252
PagI TCATGA 3 cut(s) 957, 1074, 1167
PceI AGGCCT 1 cut(s) 320
PciI ACATGT 1 cut(s) 1248
PctI GAATGC 2 cut(s) 953, 1070
PdmI GAANNNNTTC 2 cut(s) 101, 378
PfeI GAWTC 3 cut(s) 450, 526, 536
PflFI GACNNNGTC 2 cut(s) 167, 935
PleI GAGTC 1 cut(s) 1022
PpsI GAGTC 1 cut(s) 1022
Ppu21I YACGTR 1 cut(s) 554
PpuMI RGGWCCY 1 cut(s) 33
PscI ACATGT 1 cut(s) 1248
Psp5II RGGWCCY 1 cut(s) 33
Psp6I CCWGG 2 cut(s) 209, 628
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 2 cut(s) 209, 628
PspN4I GGNNCC 3 cut(s) 34, 505, 597
PspPI GGNCC 5 cut(s) 33, 213, 881, 1004, 1122
PspPPI RGGWCCY 1 cut(s) 33
PstI CTGCAG 1 cut(s) 1141
PsuI RGATCY 1 cut(s) 595
PsyI GACNNNGTC 2 cut(s) 167, 935
PvuII CAGCTG 1 cut(s) 8
RsaI GTAC 5 cut(s) 131, 257, 556, 1021, 1238
RsaNI GTAC 5 cut(s) 130, 256, 555, 1020, 1237
SalI GTCGAC 1 cut(s) 233
SaqAI TTAA 2 cut(s) 531, 854
Sau3AI GATC 3 cut(s) 595, 904, 1114
Sau96I GGNCC 5 cut(s) 33, 213, 881, 1004, 1122
SchI GAGTC 1 cut(s) 1023
ScrFI CCNGG 3 cut(s) 127, 211, 630
SduI GDGCHC 1 cut(s) 1248
SfaNI GCATC 3 cut(s) 136, 848, 886
SfcI CTRYAG 1 cut(s) 1137
SinI GGWCC 1 cut(s) 33
SmlI CTYRAG 3 cut(s) 530, 783, 1218
SmoI CTYRAG 3 cut(s) 530, 783, 1218
Sse9I AATT 6 cut(s) 150, 430, 751, 850, 1078, 1171
SseBI AGGCCT 1 cut(s) 320
SspMI CTAG 4 cut(s) 464, 644, 969, 1267
StuI AGGCCT 1 cut(s) 320
StyD4I CCNGG 3 cut(s) 125, 209, 628
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 4 cut(s) 169, 559, 1024, 1208
TaiI ACGT 1 cut(s) 556
TaqI TCGA 3 cut(s) 234, 909, 915
TaqII GACCGA 1 cut(s) 357
TasI AATT 6 cut(s) 150, 430, 751, 850, 1078, 1171
TauI GCSGC 5 cut(s) 110, 196, 199, 202, 274
TfiI GAWTC 3 cut(s) 450, 526, 536
Tru1I TTAA 2 cut(s) 531, 854
Tru9I TTAA 2 cut(s) 531, 854
TscAI CASTG 2 cut(s) 564, 949
TseFI GTSAC 2 cut(s) 338, 929
TseI GCWGC 7 cut(s) 8, 545, 548, 664, 725, 981, 1136
Tsp45I GTSAC 2 cut(s) 338, 929
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 2 cut(s) 564, 949
Tth111I GACNNNGTC 2 cut(s) 167, 935
Vha464I CTTAAG 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 33
XapI RAATTY 3 cut(s) 430, 850, 1078
XbaI TCTAGA 2 cut(s) 643, 968
XceI RCATGY 1 cut(s) 1252
XmiI GTMKAC 1 cut(s) 234
XmnI GAANNNNTTC 2 cut(s) 101, 378
XspI CTAG 4 cut(s) 464, 644, 969, 1267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.