Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003147

Physical Location & Seq

Genomic Coordinates Reverse (-)

18439945 .. 18442237

Gene Structure 2293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCATTGTTGTTTGGAATAGGATATGTGTTGATCATCTTCGAGGAGTCTTTATCATTTAGTAAAAGCGGAATAGCACTTTTGATGGCCGTTAGTTTGTGGGTTGTGCGAAGCATCGAGACTTCTGTAGAAATTGTTACTTTAGAGCTTCAACACGCAACAAGTGAAGTTAGCCAAATAGTGTTCTACATGCTCGGAGCAATGACCATTGTGGAAATAATTGATGCTCATCAAGGATTTAAGCTGGTTACAGATTGTATAACATCTAGGAAACCGAAGATACTTTTATGGGTGATTGGTTTCGCGACCTTTTTCCTCAGCTCTGTTCTTGACAACCTAACATCTACTATTGTAATGGTGTCGCTACTGAGAAGACTAATTCCTCCATCAGAATACCGCAAACTTTTAGGAGCAGTTGTGGTTATAGCAGCAAATGCAGGAGGAGCTTGGACTCCTATTGGTGATGTTACTACAACTATGCTATGGATACATGGCCATATATCAACATTTTCGACTATAAAGAACCTTTTTTTACCTTCAGCGATTTCTCTTGTTGTTCCACTGGCTCTCATGTCATTGACCAGTGAGGTACATGGAATGGGACTAAATACTCCTCCTACACCATTATTAGCTTATGATCGTAGTGCTCCAAGAGGAAAGCTTGTATTTGGAGTTGGTTTTGGAGCTTTGCTTTTTGTCCCACTGTTTAAGTCATTAACCGGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGTCATTTGGATTTTGACAGATGTCATCCATTATGGTGACTTAGAGAGACAACACCTAAAACTTCCACATGCTTTGTCTCGGATTGATTCACAAGGAGCTTTATTTTTCCTTGGGATTTTGCTATCTATGAGCAGTCTTGATGCGGCTGGGATTCTCAAAGTGATTGCGAACTATCTTGATGCTCATATAGCCAATGTTGAACTGATTGCAAGTATTATTGGAGTGGTATCAGCCATCATAGATAATGTCCCATTGGTTGCGGCAACAATGGGGATGTATGACCTCTCAACATTCCCTCAAGATTCTGAGTTTTGGCAACTCATTTCATTTTGCGCTGGAACAGGCGGTTCCATGCTTATTACTGGGTCTGCTGCTGGAGTAATCTTCATGAGTATGGAGAAAGTCAATTTCTTTTGGTACTTTCGTAAGGTGAGCGGTTTTGCTTTTGCGGGTTTTACTGCTGGTATCATGACTTACCTCGCGGTTCACAACTTCCCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006820 GO:0006848 GO:0006950 GO:0006970 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0015075 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0015711 GO:0015718 GO:0015849 GO:0022804 GO:0022857 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050833 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CitMHS

Protein Analysis

420

Amino Acids

45.45

Weight (kDa)

6.19

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CitMHS	PF03600	9 - 343	3.4e-24	Citrate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49810 AT3G19490
fragaria_vesca	FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320
malus_domestica	MD05G1088200.v1.1
prunus_persica	Prupe.8G134200_v2.0.a1 Prupe.8G134200_v2.0.a1 Prupe.8G134200_v2.0.a1 Prupe.8G134200_v2.0.a1
pyrus_communis	pycom05g08760 pycom10g08240
rosa_chinensis	RchiOBHm_Chr6g0255461 RchiOBHm_Chr6g0255491 RchiOBHm_Chr6g0255511 RchiOBHm_Chr6g0255521
rosa_laevigata	RLG00000014834 RLG00000014835
rosa_multiflora	Rmu_sc0002360.1_g000008
rosa_roxburghii	Rroxscaffold_7G00209940 Rroxscaffold_7G00209960
rosa_rugosa	Rorug05G0559000 Rorug05G0559100 Rorug05G0559100
rosa_samantha	Rh6AG076700 Rh6AG077100 Rh6AG077200 Rh6BG069500 Rh6BG069800 Rh6CG068500 Rh6DG065300
rosa_wichuraiana	Rw6G006660 Rw6G006680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1194
AccII	CGCG	2 cut(s)	305, 1241
AciI	CCGC	8 cut(s)	69, 397, 902, 1019, 1104, 1194, 1208, 1241
AcoI	YGGCCR	2 cut(s)	87, 493
AcuI	CTGAAG	1 cut(s)	522
AfaI	GTAC	2 cut(s)	591, 1178
AfiI	CCNNNNNNNGG	1 cut(s)	737
AgsI	TTSAA	2 cut(s)	152, 959
AluBI	AGCT	8 cut(s)	148, 244, 321, 446, 632, 661, 686, 857
AluI	AGCT	8 cut(s)	148, 244, 321, 446, 632, 661, 686, 857
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	3 cut(s)	113, 799, 840
AoxI	GGCC	2 cut(s)	87, 493
ApeKI	GCWGC	2 cut(s)	428, 1130
AspLEI	GCGC	1 cut(s)	1094
AsuHPI	GGTGA	4 cut(s)	304, 473, 806, 1201
BaeI	ACNNNNGTAYC	4 cut(s)	724, 757, 1168, 1201
BalI	TGGCCA	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	379
Bbv12I	GWGCWC	1 cut(s)	649
BbvCI	CCTCAGC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	440, 1117
BccI	CCATC	3 cut(s)	79, 394, 1001
BceAI	ACGGC	1 cut(s)	74
BciVI	GTATCC	1 cut(s)	480
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	3 cut(s)	113, 799, 840
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	480
BisI	GCNGC	4 cut(s)	429, 903, 1020, 1131
BlsI	GCNGC	4 cut(s)	430, 904, 1021, 1132
BmiI	GGNNCC	1 cut(s)	1108
BmrI	ACTGGG	1 cut(s)	1131
BmsI	GCATC	4 cut(s)	123, 214, 889, 928
BmuI	ACTGGG	1 cut(s)	1131
BoxI	GACNNNNGTC	1 cut(s)	779
BpiI	GAAGAC	1 cut(s)	379
BpmI	CTGGAG	1 cut(s)	1155
Bpu10I	CCTNAGC	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	1041
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	868
BsaWI	WCCGGW	1 cut(s)	719
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bsc4I	CCNNNNNNNGG	1 cut(s)	737
Bse1I	ACTGG	3 cut(s)	567, 582, 1126
Bse3DI	GCAATG	1 cut(s)	207
Bse8I	GATNNNNATC	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	868
BseGI	GGATG	2 cut(s)	783, 1038
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	737
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	3 cut(s)	331, 359, 1056
BseNI	ACTGG	3 cut(s)	567, 582, 1126
BseRI	GAGGAG	3 cut(s)	59, 456, 603
BseXI	GCAGC	2 cut(s)	440, 1117
BseYI	CCCAGC	1 cut(s)	905
Bsh1236I	CGCG	2 cut(s)	305, 1241
BshFI	GGCC	2 cut(s)	89, 495
BsiHKAI	GWGCWC	1 cut(s)	649
BsiSI	CCGG	1 cut(s)	720
BslFI	GGGAC	3 cut(s)	615, 683, 992
BslI	CCNNNNNNNGG	1 cut(s)	737
BsmAI	GTCTC	3 cut(s)	113, 799, 840
BsmFI	GGGAC	3 cut(s)	615, 683, 992
BsnI	GGCC	2 cut(s)	89, 495
Bsp1286I	GDGCHC	1 cut(s)	649
Bsp143I	GATC	2 cut(s)	33, 637
Bsp68I	TCGCGA	1 cut(s)	305
BspACI	CCGC	8 cut(s)	69, 397, 902, 1019, 1104, 1194, 1208, 1241
BspANI	GGCC	2 cut(s)	89, 495
BspCNI	CTCAG	3 cut(s)	330, 360, 1057
BspFNI	CGCG	2 cut(s)	305, 1241
BspHI	TCATGA	2 cut(s)	1146, 1227
BspLI	GGNNCC	1 cut(s)	1108
BsrBI	CCGCTC	1 cut(s)	1194
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	3 cut(s)	567, 582, 1126
BssECI	CCNNGG	1 cut(s)	868
BssMI	GATC	2 cut(s)	33, 637
BssT1I	CCWWGG	1 cut(s)	868
Bst4CI	ACNGT	1 cut(s)	705
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstDEI	CTNAG	4 cut(s)	317, 368, 799, 1065
BstF5I	GGATG	2 cut(s)	783, 1038
BstFNI	CGCG	2 cut(s)	305, 1241
BstHHI	GCGC	1 cut(s)	1094
BstKTI	GATC	2 cut(s)	36, 640
BstMAI	GTCTC	3 cut(s)	113, 799, 840
BstMBI	GATC	2 cut(s)	33, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	434, 443, 947
BstNSI	RCATGY	2 cut(s)	193, 830
BstPAI	GACNNNNGTC	1 cut(s)	779
BstSFI	CTRYAG	1 cut(s)	126
BstUI	CGCG	2 cut(s)	305, 1241
BstV1I	GCAGC	2 cut(s)	440, 1117
BstV2I	GAAGAC	1 cut(s)	379
BsuI	GTATCC	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	89, 495
BtsCI	GGATG	2 cut(s)	783, 1038
BtsIMutI	CAGTG	3 cut(s)	560, 589, 701
BtuMI	TCGCGA	1 cut(s)	305
CciI	TCATGA	2 cut(s)	1146, 1227
CfoI	GCGC	1 cut(s)	1094
Csp6I	GTAC	2 cut(s)	590, 1177
CspCI	CAANNNNNGTGG	2 cut(s)	813, 848
CviAII	CATG	9 cut(s)	190, 491, 571, 593, 736, 827, 1111, 1147, 1228
CviQI	GTAC	2 cut(s)	590, 1177
DdeI	CTNAG	4 cut(s)	317, 368, 799, 1065
DpnI	GATC	2 cut(s)	35, 639
DpnII	GATC	2 cut(s)	33, 637
EaeI	YGGCCR	2 cut(s)	87, 493
Eco130I	CCWWGG	1 cut(s)	868
Eco57I	CTGAAG	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	868
ErhI	CCWWGG	1 cut(s)	868
FaeI	CATG	9 cut(s)	193, 494, 574, 596, 739, 830, 1114, 1150, 1231
FaqI	GGGAC	3 cut(s)	615, 683, 992
FatI	CATG	9 cut(s)	189, 490, 570, 592, 735, 826, 1110, 1146, 1227
FauI	CCCGC	1 cut(s)	1201
FbaI	TGATCA	1 cut(s)	33
Fnu4HI	GCNGC	4 cut(s)	429, 903, 1020, 1131
FokI	GGATG	2 cut(s)	770, 1045
Fsp4HI	GCNGC	4 cut(s)	429, 903, 1020, 1131
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	1 cut(s)	1093
GluI	GCNGC	4 cut(s)	429, 903, 1020, 1131
GsaI	CCCAGC	1 cut(s)	909
GsuI	CTGGAG	1 cut(s)	1155
HaeIII	GGCC	2 cut(s)	89, 495
HapII	CCGG	1 cut(s)	720
HhaI	GCGC	1 cut(s)	1094
Hin1II	CATG	9 cut(s)	193, 494, 574, 596, 739, 830, 1114, 1150, 1231
Hin6I	GCGC	1 cut(s)	1092
HinP1I	GCGC	1 cut(s)	1092
HindIII	AAGCTT	1 cut(s)	659
HinfI	GANTC	6 cut(s)	47, 451, 759, 845, 910, 1061
HpaII	CCGG	1 cut(s)	720
HphI	GGTGA	4 cut(s)	304, 473, 806, 1201
Hpy166II	GTNNAC	1 cut(s)	1246
Hpy188I	TCNGA	4 cut(s)	197, 391, 840, 1066
Hpy188III	TCNNGA	8 cut(s)	118, 304, 329, 896, 935, 1058, 1147, 1228
Hpy8I	GTNNAC	1 cut(s)	1246
HpyAV	CCTTC	1 cut(s)	546
HpyCH4III	ACNGT	1 cut(s)	705
HpyCH4V	TGCA	2 cut(s)	437, 968
HpyF10VI	GCNNNNNNNGC	3 cut(s)	434, 443, 947
HpyF3I	CTNAG	4 cut(s)	317, 368, 799, 1065
Hsp92II	CATG	9 cut(s)	193, 494, 574, 596, 739, 830, 1114, 1150, 1231
HspAI	GCGC	1 cut(s)	1092
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	33, 637
LmnI	GCTCC	6 cut(s)	197, 410, 443, 652, 683, 854
Lsp1109I	GCAGC	2 cut(s)	440, 1117
LweI	GCATC	4 cut(s)	123, 214, 889, 928
MaeI	CTAG	1 cut(s)	267
MaeIII	GTNAC	4 cut(s)	136, 247, 466, 794
MalI	GATC	2 cut(s)	35, 639
MbiI	CCGCTC	1 cut(s)	1194
MboI	GATC	2 cut(s)	33, 637
MboII	GAAGA	4 cut(s)	31, 289, 384, 1135
MhlI	GDGCHC	1 cut(s)	649
MlsI	TGGCCA	1 cut(s)	495
MluCI	AATT	4 cut(s)	132, 219, 378, 1165
MluNI	TGGCCA	1 cut(s)	495
MlyI	GAGTC	3 cut(s)	56, 445, 768
Mox20I	TGGCCA	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	4 cut(s)	240, 708, 716, 1261
MslI	CAYNNNNRTG	2 cut(s)	792, 1151
Msp20I	TGGCCA	1 cut(s)	495
MspI	CCGG	1 cut(s)	720
MvnI	CGCG	2 cut(s)	305, 1241
MwoI	GCNNNNNNNGC	3 cut(s)	434, 443, 947
NdeII	GATC	2 cut(s)	33, 637
NlaIII	CATG	9 cut(s)	193, 494, 574, 596, 739, 830, 1114, 1150, 1231
NlaIV	GGNNCC	1 cut(s)	1108
NmuCI	GTSAC	1 cut(s)	794
NruI	TCGCGA	1 cut(s)	305
NspI	RCATGY	2 cut(s)	193, 830
PagI	TCATGA	2 cut(s)	1146, 1227
PfeI	GAWTC	3 cut(s)	845, 910, 1061
PkrI	GCNGC	4 cut(s)	430, 904, 1021, 1132
PleI	GAGTC	3 cut(s)	55, 445, 767
PpsI	GAGTC	3 cut(s)	55, 445, 767
PshAI	GACNNNNGTC	1 cut(s)	779
PspFI	CCCAGC	1 cut(s)	905
PspN4I	GGNNCC	1 cut(s)	1108
RruI	TCGCGA	1 cut(s)	305
RsaI	GTAC	2 cut(s)	591, 1178
RsaNI	GTAC	2 cut(s)	590, 1177
RseI	CAYNNNNRTG	2 cut(s)	792, 1151
SaqAI	TTAA	4 cut(s)	240, 708, 716, 1261
SatI	GCNGC	4 cut(s)	429, 903, 1020, 1131
Sau3AI	GATC	2 cut(s)	33, 637
SchI	GAGTC	3 cut(s)	56, 445, 768
SduI	GDGCHC	1 cut(s)	649
SfaNI	GCATC	4 cut(s)	123, 214, 889, 928
SfcI	CTRYAG	1 cut(s)	126
SmiMI	CAYNNNNRTG	2 cut(s)	792, 1151
SmlI	CTYRAG	1 cut(s)	1056
SmoI	CTYRAG	1 cut(s)	1056
Sse9I	AATT	4 cut(s)	132, 219, 378, 1165
SsiI	CCGC	8 cut(s)	69, 397, 902, 1019, 1104, 1194, 1208, 1241
SspMI	CTAG	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	868
TaaI	ACNGT	1 cut(s)	705
TaqI	TCGA	3 cut(s)	42, 117, 512
TasI	AATT	4 cut(s)	132, 219, 378, 1165
TauI	GCSGC	2 cut(s)	905, 1022
TfiI	GAWTC	3 cut(s)	845, 910, 1061
Tru1I	TTAA	4 cut(s)	240, 708, 716, 1261
Tru9I	TTAA	4 cut(s)	240, 708, 716, 1261
TscAI	CASTG	3 cut(s)	567, 589, 708
TseFI	GTSAC	1 cut(s)	794
TseI	GCWGC	2 cut(s)	428, 1130
Tsp45I	GTSAC	1 cut(s)	794
TspDTI	ATGAA	2 cut(s)	1074, 1135
TspRI	CASTG	3 cut(s)	567, 589, 708
XceI	RCATGY	2 cut(s)	193, 830
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.