Rw6G006680

Citrate transporter

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
10730084 .. 10743373
13290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G006680.1

Sequence Viewer

Length: 1281 bp
ATGGCACTGCTATTTGGAATAGGATATGCAGGCATTATTTTTGAGGAATCTCTGGCCCTCAACAAGAGTGGAGTGGGTTTGATAATGGCTGTAGGCTTGTGGACAGTGAGAAGTATTGGTGCTCCAATATCTGCTGAAGTCAGTGAAATAGTGTTTTTCTTGCTTGGTGCAATGACAATTGTAGAGATCGTTGATTCTCATCTAGGATTTAATCTGGTCACTGACAGTATAACTACTCGTAAGCCGAGAACACTCCTCTGGGTGGTTGGTTTTGTGACTTTCTTCCTTGGTTCAATTCTTGACAACCTGACGTGTACCATTGTCATGGTCTCTTTATTGCGAAAACTAGTGCCTCCCTCTGACTTCCGCAAGATTTTAGGAGGAGTTGTTGTCATAGCTGCAAATGCTGGTGGTACGTGGACTCCTATTGGTGATGTTACCACCACTATGTTATGGATACATGGTCAGATATCAACAGTGGAGACAATGAAGGGATTATTTATACCAGCAGTCGTTTCTGTTGCTGTTCCACTGGCACTTTTGTCCCTTACAAGTGAAGCAAGTGGTGATGGACCAGACACATCCAATGTTATGGCATCCAAACAGATGGCTCCCCGGGGACAGCTAATTGTTTTCTTTGTAGGCTTCGGAGCTTTGATTTTTGTTCCAGTTTTCAAGTCCCTAACTGGTTTGCCTCCTTACATGGGTATGCTGCTGGGACTTGGAGTACTTTGGATGCTGACTGATACAATCCACTGTGGTGAATCGCAAAGACAAAGGTTGAAAGTACCTCAGGCTTTGTCACGGATTGACACTCAAGGAGCGCTTTTCTTCCTTGGAATTCTTTTATCTGTTAGCAGCCTGGAGGCGGCAGGAATTCTTCGGGAATTAGCACACTACCTGGATGCTCATATTGCCAATATTGAACTGACTGCAATTTCAATAGGAATTGTCTCAGCAATTATAGACAATGTTCCACTGGTTGCTGCAGCTATGGGGATGTACGATGTTGCCTCTTTTCCCCAGGACTCTGAGTTTTGGCAGCTGGTTGCGTATTGTGCTGGTACTGGTGGATCCATGTTAGTTATTGGTTCTGCAGCCAGAGTTGCTTTTATGGGAATGGAAAAGGTGGACTTCTTCTGGTACTTTCGCAAGGTGAGTGGGTTTGCTTTTGCCGGTTATGCTGCTGGTATTGCAGCCTATTTAGCGGCTCAAAACCTCCACATCTCAATACCAACAACCGTAGCTCAGGTTCCTTTTCTTTTGGATCCTGAATTATGA

Protein Analysis

426

Amino Acids

45.36

Weight (kDa)

5.37

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CitMHS PF03600 9 - 340 3.1e-25 Citrate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 367, 869, 1208
AclWI GGATC 4 cut(s) 1068, 1081, 1262, 1275
AcsI RAATTY 2 cut(s) 840, 876
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 7 cut(s) 316, 415, 729, 789, 1004, 1066, 1145
AfeI AGCGCT 1 cut(s) 825
AfiI CCNNNNNNNGG 3 cut(s) 262, 704, 868
AflIII ACRYGT 1 cut(s) 311
AgsI TTSAA 5 cut(s) 294, 676, 784, 926, 942
AhlI ACTAGT 1 cut(s) 346
AjiI CACGTC 1 cut(s) 312
AjnI CCWGG 3 cut(s) 861, 900, 1023
AleI CACNNNNGTG 1 cut(s) 759
AluBI AGCT 6 cut(s) 398, 625, 653, 992, 1045, 1247
AluI AGCT 6 cut(s) 398, 625, 653, 992, 1045, 1247
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 3 cut(s) 334, 476, 958
AlwI GGATC 4 cut(s) 1068, 1081, 1262, 1275
Ama87I CYCGRG 1 cut(s) 615
Aor51HI AGCGCT 1 cut(s) 825
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 9 cut(s) 398, 712, 858, 986, 989, 1042, 1097, 1184, 1196
ApoI RAATTY 2 cut(s) 840, 876
AspLEI GCGC 1 cut(s) 826
AspS9I GGNCC 2 cut(s) 55, 572
AsuC2I CCSGG 2 cut(s) 616, 617
AsuHPI GGTGA 4 cut(s) 443, 578, 773, 1168
AvaI CYCGRG 1 cut(s) 615
AvaII GGWCC 1 cut(s) 572
AxyI CCTNAGG 1 cut(s) 792
BamHI GGATCC 2 cut(s) 1073, 1267
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 9 cut(s) 385, 699, 870, 973, 1001, 1054, 1109, 1171, 1208
BccI CCATC 2 cut(s) 563, 601
BciT130I CCWGG 3 cut(s) 863, 902, 1025
BciVI GTATCC 1 cut(s) 450
BcnI CCSGG 2 cut(s) 616, 617
BcoDI GTCTC 3 cut(s) 334, 476, 958
BcuI ACTAGT 1 cut(s) 346
BfaI CTAG 2 cut(s) 203, 347
BfmI CTRYAG 3 cut(s) 90, 987, 1095
BfoI RGCGCY 1 cut(s) 827
BfuI GTATCC 1 cut(s) 450
BmcAI AGTACT 1 cut(s) 729
Bme1390I CCNGG 5 cut(s) 616, 617, 863, 902, 1025
Bme18I GGWCC 1 cut(s) 572
BmeT110I CYCGRG 1 cut(s) 615
BmgBI CACGTC 1 cut(s) 312
BmgT120I GGNCC 2 cut(s) 55, 572
BmiI GGNNCC 4 cut(s) 612, 1075, 1254, 1269
BmrFI CCNGG 5 cut(s) 616, 617, 863, 902, 1025
BmsI GCATC 3 cut(s) 605, 726, 895
BpmI CTGGAG 1 cut(s) 884
Bpu10I CCTNAGC 1 cut(s) 1248
BpuEI CTTGAG 1 cut(s) 801
BpuMI CCSGG 2 cut(s) 616, 617
BsaAI YACGTR 1 cut(s) 417
BsaBI GATNNNNATC 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 334
BsaJI CCNNGG 6 cut(s) 286, 614, 615, 616, 835, 1023
BsaXI ACNNNNNCTCC 6 cut(s) 372, 375, 402, 405, 406, 436
Bsc4I CCNNNNNNNGG 3 cut(s) 262, 704, 868
Bse118I RCCGGY 1 cut(s) 1175
Bse1I ACTGG 5 cut(s) 537, 668, 691, 984, 1072
Bse21I CCTNAGG 1 cut(s) 792
Bse3DI GCAATG 1 cut(s) 177
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 3 cut(s) 863, 902, 1025
BseDI CCNNGG 6 cut(s) 286, 614, 615, 616, 835, 1023
BseGI GGATG 5 cut(s) 581, 596, 741, 910, 1005
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 3 cut(s) 262, 704, 868
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 4 cut(s) 806, 969, 1023, 1262
BseNI ACTGG 5 cut(s) 537, 668, 691, 984, 1072
BseRI GAGGAG 2 cut(s) 245, 396
BseXI GCAGC 9 cut(s) 385, 699, 870, 973, 1001, 1054, 1109, 1171, 1208
BseYI CCCAGC 1 cut(s) 715
BshFI GGCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 615
BsiSI CCGG 2 cut(s) 616, 1176
BslFI GGGAC 4 cut(s) 529, 633, 664, 732
BslI CCNNNNNNNGG 3 cut(s) 262, 704, 868
BsmAI GTCTC 3 cut(s) 334, 476, 958
BsmFI GGGAC 4 cut(s) 529, 633, 664, 732
BsnI GGCC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 334
BsoBI CYCGRG 1 cut(s) 615
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 3 cut(s) 186, 1073, 1267
BspACI CCGC 3 cut(s) 367, 869, 1208
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 4 cut(s) 805, 968, 1024, 1261
BspLI GGNNCC 4 cut(s) 612, 1075, 1254, 1269
BspMAI CTGCAG 2 cut(s) 991, 1099
BspPI GGATC 4 cut(s) 1068, 1081, 1262, 1275
BspTNI GGTCTC 1 cut(s) 334
BsrDI GCAATG 1 cut(s) 177
BsrFI RCCGGY 1 cut(s) 1175
BsrI ACTGG 5 cut(s) 537, 668, 691, 984, 1072
BssAI RCCGGY 1 cut(s) 1175
BssECI CCNNGG 6 cut(s) 286, 614, 615, 616, 835, 1023
BssMI GATC 3 cut(s) 186, 1073, 1267
BssT1I CCWWGG 2 cut(s) 286, 835
Bst2UI CCWGG 3 cut(s) 863, 902, 1025
Bst4CI ACNGT 5 cut(s) 106, 227, 478, 758, 1243
BstBAI YACGTR 1 cut(s) 417
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 4 cut(s) 792, 955, 1032, 1248
BstF5I GGATG 5 cut(s) 581, 596, 741, 910, 1005
BstH2I RGCGCY 1 cut(s) 827
BstHHI GCGC 1 cut(s) 826
BstKTI GATC 3 cut(s) 189, 1076, 1270
BstMAI GTCTC 3 cut(s) 334, 476, 958
BstMBI GATC 3 cut(s) 186, 1073, 1267
BstMWI GCNNNNNNNGC 7 cut(s) 404, 914, 1058, 1106, 1181, 1193, 1205
BstNI CCWGG 3 cut(s) 863, 902, 1025
BstSCI CCNGG 5 cut(s) 614, 615, 861, 900, 1023
BstSFI CTRYAG 3 cut(s) 90, 987, 1095
BstV1I GCAGC 9 cut(s) 385, 699, 870, 973, 1001, 1054, 1109, 1171, 1208
BstX2I RGATCY 2 cut(s) 1073, 1267
BstXI CCANNNNNNTGG 3 cut(s) 325, 592, 607
BstYI RGATCY 2 cut(s) 1073, 1267
Bsu36I CCTNAGG 1 cut(s) 792
BsuI GTATCC 1 cut(s) 450
BsuRI GGCC 1 cut(s) 56
BtrI CACGTC 1 cut(s) 312
BtsCI GGATG 5 cut(s) 581, 596, 741, 910, 1005
BtsI GCAGTG 1 cut(s) 5
BtsIMutI CAGTG 8 cut(s) 5, 111, 148, 219, 483, 530, 754, 977
Cac8I GCNNGC 1 cut(s) 31
CfoI GCGC 1 cut(s) 826
Cfr10I RCCGGY 1 cut(s) 1175
Cfr13I GGNCC 2 cut(s) 55, 572
Cfr9I CCCGGG 1 cut(s) 615
Csp6I GTAC 7 cut(s) 315, 414, 728, 788, 1003, 1065, 1144
CspCI CAANNNNNGTGG 4 cut(s) 49, 84, 1141, 1176
CviAII CATG 4 cut(s) 325, 461, 703, 1078
CviQI GTAC 7 cut(s) 315, 414, 728, 788, 1003, 1065, 1144
DdeI CTNAG 4 cut(s) 792, 955, 1032, 1248
DpnI GATC 3 cut(s) 188, 1075, 1269
DpnII GATC 3 cut(s) 186, 1073, 1267
Eco130I CCWWGG 2 cut(s) 286, 835
Eco31I GGTCTC 1 cut(s) 334
Eco32I GATATC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 572
Eco47III AGCGCT 1 cut(s) 825
Eco57I CTGAAG 1 cut(s) 156
Eco81I CCTNAGG 1 cut(s) 792
Eco88I CYCGRG 1 cut(s) 615
EcoRI GAATTC 2 cut(s) 840, 876
EcoRII CCWGG 3 cut(s) 861, 900, 1023
EcoRV GATATC 1 cut(s) 471
EcoT14I CCWWGG 2 cut(s) 286, 835
ErhI CCWWGG 2 cut(s) 286, 835
FaeI CATG 4 cut(s) 328, 464, 706, 1081
FalI AAGNNNNNCTT 4 cut(s) 810, 842, 1118, 1150
FaqI GGGAC 4 cut(s) 529, 633, 664, 732
FatI CATG 4 cut(s) 324, 460, 702, 1077
FokI GGATG 5 cut(s) 568, 583, 748, 917, 1012
FspBI CTAG 2 cut(s) 203, 347
GlaI GCGC 1 cut(s) 825
GsaI CCCAGC 1 cut(s) 719
GsuI CTGGAG 1 cut(s) 884
HaeII RGCGCY 1 cut(s) 827
HaeIII GGCC 1 cut(s) 56
HapII CCGG 2 cut(s) 616, 1176
HhaI GCGC 1 cut(s) 826
Hin1II CATG 4 cut(s) 328, 464, 706, 1081
Hin6I GCGC 1 cut(s) 824
HinP1I GCGC 1 cut(s) 824
HinfI GANTC 5 cut(s) 47, 194, 421, 764, 1028
HpaII CCGG 2 cut(s) 616, 1176
HphI GGTGA 4 cut(s) 443, 578, 773, 1168
Hpy166II GTNNAC 4 cut(s) 102, 315, 420, 1132
Hpy188I TCNGA 4 cut(s) 361, 468, 650, 1033
Hpy188III TCNNGA 3 cut(s) 299, 884, 1271
Hpy8I GTNNAC 4 cut(s) 102, 315, 420, 1132
HpyAV CCTTC 1 cut(s) 484
HpyCH4III ACNGT 5 cut(s) 106, 227, 478, 758, 1243
HpyCH4IV ACGT 2 cut(s) 311, 416
HpyCH4V TGCA 7 cut(s) 29, 170, 401, 935, 989, 1097, 1196
HpyF10VI GCNNNNNNNGC 7 cut(s) 404, 914, 1058, 1106, 1181, 1193, 1205
HpyF3I CTNAG 4 cut(s) 792, 955, 1032, 1248
HpySE526I ACGT 2 cut(s) 311, 416
Hsp92II CATG 4 cut(s) 328, 464, 706, 1081
HspAI GCGC 1 cut(s) 824
Kzo9I GATC 3 cut(s) 186, 1073, 1267
LmnI GCTCC 4 cut(s) 127, 616, 650, 821
Lsp1109I GCAGC 9 cut(s) 385, 699, 870, 973, 1001, 1054, 1109, 1171, 1208
LweI GCATC 3 cut(s) 605, 726, 895
MaeI CTAG 2 cut(s) 203, 347
MaeII ACGT 2 cut(s) 311, 416
MaeIII GTNAC 4 cut(s) 217, 274, 436, 801
MalI GATC 3 cut(s) 188, 1075, 1269
MboI GATC 3 cut(s) 186, 1073, 1267
MboII GAAGA 4 cut(s) 274, 823, 872, 1129
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 2 cut(s) 1073, 1267
MhlI GDGCHC 1 cut(s) 124
MlyI GAGTC 2 cut(s) 415, 1022
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 4 cut(s) 323, 446, 707, 759
MspA1I CMGCKG 1 cut(s) 1045
MspI CCGG 2 cut(s) 616, 1176
MspR9I CCNGG 5 cut(s) 616, 617, 863, 902, 1025
MunI CAATTG 1 cut(s) 177
MvaI CCWGG 3 cut(s) 863, 902, 1025
MwoI GCNNNNNNNGC 7 cut(s) 404, 914, 1058, 1106, 1181, 1193, 1205
NciI CCSGG 2 cut(s) 616, 617
NdeII GATC 3 cut(s) 186, 1073, 1267
NlaIII CATG 4 cut(s) 328, 464, 706, 1081
NlaIV GGNNCC 4 cut(s) 612, 1075, 1254, 1269
NmeAIII GCCGAG 1 cut(s) 270
NmuCI GTSAC 3 cut(s) 217, 274, 801
OliI CACNNNNGTG 1 cut(s) 759
PfeI GAWTC 3 cut(s) 47, 194, 764
PleI GAGTC 2 cut(s) 415, 1022
PpsI GAGTC 2 cut(s) 415, 1022
Ppu21I YACGTR 1 cut(s) 417
Psp6I CCWGG 3 cut(s) 861, 900, 1023
PspFI CCCAGC 1 cut(s) 715
PspGI CCWGG 3 cut(s) 861, 900, 1023
PspN4I GGNNCC 4 cut(s) 612, 1075, 1254, 1269
PspPI GGNCC 2 cut(s) 55, 572
PsrI GAACNNNNNNTAC 2 cut(s) 1236, 1268
PstI CTGCAG 2 cut(s) 991, 1099
PsuI RGATCY 2 cut(s) 1073, 1267
PvuII CAGCTG 1 cut(s) 1045
RsaI GTAC 7 cut(s) 316, 415, 729, 789, 1004, 1066, 1145
RsaNI GTAC 7 cut(s) 315, 414, 728, 788, 1003, 1065, 1144
RseI CAYNNNNRTG 4 cut(s) 323, 446, 707, 759
SaqAI TTAA 1 cut(s) 210
Sau3AI GATC 3 cut(s) 186, 1073, 1267
Sau96I GGNCC 2 cut(s) 55, 572
ScaI AGTACT 1 cut(s) 729
SchI GAGTC 2 cut(s) 415, 1022
ScrFI CCNGG 5 cut(s) 616, 617, 863, 902, 1025
SduI GDGCHC 1 cut(s) 124
SfaNI GCATC 3 cut(s) 605, 726, 895
SfcI CTRYAG 3 cut(s) 90, 987, 1095
SinI GGWCC 1 cut(s) 572
SmaI CCCGGG 1 cut(s) 617
SmiMI CAYNNNNRTG 4 cut(s) 323, 446, 707, 759
SmlI CTYRAG 1 cut(s) 816
SmoI CTYRAG 1 cut(s) 816
SpeI ACTAGT 1 cut(s) 346
SsiI CCGC 3 cut(s) 367, 869, 1208
SspI AATATT 1 cut(s) 922
SspMI CTAG 2 cut(s) 203, 347
StyD4I CCNGG 5 cut(s) 614, 615, 861, 900, 1023
StyI CCWWGG 2 cut(s) 286, 835
TaaI ACNGT 5 cut(s) 106, 227, 478, 758, 1243
TaiI ACGT 2 cut(s) 314, 419
TatI WGTACW 1 cut(s) 727
TauI GCSGC 2 cut(s) 872, 1211
TfiI GAWTC 3 cut(s) 47, 194, 764
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 8 cut(s) 12, 111, 148, 226, 483, 537, 761, 984
TseFI GTSAC 3 cut(s) 217, 274, 801
TseI GCWGC 9 cut(s) 398, 712, 858, 986, 989, 1042, 1097, 1184, 1196
Tsp45I GTSAC 3 cut(s) 217, 274, 801
TspDTI ATGAA 1 cut(s) 503
TspGWI ACGGA 1 cut(s) 820
TspMI CCCGGG 1 cut(s) 615
TspRI CASTG 8 cut(s) 12, 111, 148, 226, 483, 537, 761, 984
VpaK11BI GGWCC 1 cut(s) 572
XapI RAATTY 2 cut(s) 840, 876
XmaI CCCGGG 1 cut(s) 615
XspI CTAG 2 cut(s) 203, 347
ZrmI AGTACT 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.