AT3G19490

sodium ion transport

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
6754615 .. 6758285
3671 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19490.1

Sequence Viewer

Length: 1731 bp
ATGGCGGTGTTTCCTATCGGTTCTCACTTTGCACCGCCGCATCAGTTGACGAAGAGACACGTCATCGCGACTTCATCACCTATCTCCATCTCCACCCGATTGCCGCAAAATGTTTCCTTTTCGAAAGTATCTGGAGTTACAGGCTCGACGAGGTTATCCAAACATGGTGTTCTCGTGAGGGCCGAGGATAAGATAAGGAGCTCTTCTTCTCCTTCTTCTCTCGATGAACCAATCGATGAGGATTTGATGGACTCATCAGGATTATGTGACCCGTTATGCTCGGTTGATGAACCTAGTTCAAGTTACTTTGAGGCGAATTATCAGCCAAAGACAGATATAATCAAAGCTCTTGCTATTCTTGCAGCAGCTCTTACAGGAACAGCTGCCATTAACCATTCCTGGGTCGCTGCTAATCAGGATGTTGCTATGGCATTGTTGTTTGGAATAGGATACGCTGGCATCATCTTTGAAGAGTCTTTAGCTTTTAATAAAAGTGGAATAGGACTTTTGATGGCTGTGAGTTTGTGGGTTGTGCGGAGCATAGGGGCTCCTTCAACTGAAATAGCTGTTTTAGATCTTCAACATGCAACAGCTGAAGTTAGTGAAATAGTATTTTTCTTGCTTGGCGCAATGACCATTGTGGAGATAGTTGATGCTCACCAAGGGTTTAAGTTGGTTACAGACAATATCACCACTCGGAAGCCAAAGACACTTTTATGGGTGGTTGGCTTTGTGACTTTCTTTCTCAGTTCGATTCTAGACAATCTGACCTCTACCATTGTCATGGTTTCTTTAATAAGGAAACTGGTTCCACAATCAGAGTACCGCAAACTTCTAGGAGGTGTGGTAGTGATAGCAGCAAATGCAGGAGGAGCATGGACTCCAATTGGTGATGTTACTACAACTATGTTATGGATTCATGGTCAGATATCCACCTTGCCGACTATGAAGGACCTTTTTCTACCTTCGGTTGTGTCTCTTGCTGTTCCACTAGCCCTCATGTCTTTGACCAGTGAGGTAAATGGAAAGGAACAGGATCCTAAAGATGTATTGGCTTCTGAAAAGATGGCTCCAAGAGGGAAGCTAGTTTTTGGAGTTGGCCTTGGAGCATTGGTTTTTGTTCCAGTCTTTAAAGCTCTAACTGGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGTTCTTTGGATCTTGACAGATGCCATTCATTACGGTGAATCAGAAAGACAAAAGCTCAAAGTACCTCAAGCCTTATCTCGAATAGACACACAAGGTGCTCTGTTTTTCCTCGGGATTCTTTTATCCGTAAGCAGCCTTGAGGCAGCTGGGATACTCCGGGAGATTGCAAACTACCTTGATGCCAATATACCCAACGTTGAGCTCATTGCAAGTGCTATCGGTGTTGTATCAGCAATCATAGACAATGTTCCACTGGTTGCAGCGACTATGGGGATGTATGATCTCACATCGTTCCCTCAAGATTCTGAATTTTGGCAGCTCATTGCATTCTGTGCCGGCACTGGTGGTTCGATGCTTGTCATTGGTTCTGCTGCTGGTGTAGCCTTCATGGGGATGGAGAAAGTCGATTTCTTTTGGTATTTCCGAAAGGTTAGTGGTTTTGCTTTTGCTGGCTATGCTGCTGGTATCGCAGCTTATCTGGCCGTTCATAATCTTCATTTCGAGATCCCAACAACTGTGGCTCAGATCCCATTTCTCACTGGTTCATAG

Protein Analysis

576

Amino Acids

61.37

Weight (kDa)

5.49

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CitMHS PF03600 154 - 484 1.5e-24 Citrate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 68
AciI CCGC 6 cut(s) 5, 35, 38, 104, 535, 826
AclI AACGTT 1 cut(s) 1377
AclWI GGATC 5 cut(s) 1031, 1044, 1199, 1681, 1702
AcoI YGGCCR 1 cut(s) 1662
AcsI RAATTY 1 cut(s) 1490
AcuI CTGAAG 1 cut(s) 615
AdeI CACNNNGTG 1 cut(s) 1277
AfaI GTAC 2 cut(s) 824, 1245
AfiI CCNNNNNNNGG 3 cut(s) 400, 1160, 1572
AflIII ACRYGT 1 cut(s) 58
AgsI TTSAA 4 cut(s) 300, 470, 555, 581
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 398
Alw21I GWGCWC 3 cut(s) 203, 1282, 1386
Alw26I GTCTC 2 cut(s) 49, 981
AlwI GGATC 5 cut(s) 1031, 1044, 1199, 1681, 1702
Ama87I CYCGRG 1 cut(s) 1292
AoxI GGCC 3 cut(s) 180, 1099, 1662
ApoI RAATTY 1 cut(s) 1490
AspLEI GCGC 1 cut(s) 629
AspS9I GGNCC 2 cut(s) 180, 952
AsuC2I CCSGG 1 cut(s) 1340
AsuHPI GGTGA 5 cut(s) 69, 650, 682, 902, 1229
AsuII TTCGAA 1 cut(s) 122
AvaI CYCGRG 1 cut(s) 1292
AvaII GGWCC 1 cut(s) 952
BaeI ACNNNNGTAYC 2 cut(s) 1147, 1180
BamHI GGATCC 1 cut(s) 1036
BanII GRGCYC 3 cut(s) 203, 550, 1386
BauI CACGAG 1 cut(s) 173
Bbv12I GWGCWC 3 cut(s) 203, 1282, 1386
BccI CCATC 5 cut(s) 95, 241, 505, 1060, 1570
BceAI ACGGC 1 cut(s) 1649
BciT130I CCWGG 1 cut(s) 400
BciVI GTATCC 2 cut(s) 443, 1326
BcnI CCSGG 1 cut(s) 1340
BcoDI GTCTC 2 cut(s) 49, 981
BfaI CTAG 5 cut(s) 294, 758, 836, 992, 1085
BfuI GTATCC 2 cut(s) 443, 1326
BglII AGATCT 1 cut(s) 574
Bme1390I CCNGG 2 cut(s) 400, 1340
Bme18I GGWCC 1 cut(s) 952
BmeT110I CYCGRG 1 cut(s) 1292
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 180, 952
BmiI GGNNCC 4 cut(s) 549, 810, 1038, 1071
BmrFI CCNGG 2 cut(s) 400, 1340
BmsI GCATC 6 cut(s) 49, 468, 643, 1192, 1351, 1524
BpmI CTGGAG 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 122
BpuEI CTTGAG 3 cut(s) 1233, 1340, 1464
BpuMI CCSGG 1 cut(s) 1340
Bsa29I ATCGAT 1 cut(s) 234
BsaJI CCNNGG 5 cut(s) 183, 399, 661, 1102, 1291
BsaXI ACNNNNNCTCC 4 cut(s) 831, 861, 1098, 1128
Bsc4I CCNNNNNNNGG 3 cut(s) 400, 1160, 1572
Bse118I RCCGGY 1 cut(s) 1517
Bse1I ACTGG 7 cut(s) 810, 1011, 1124, 1147, 1440, 1528, 1726
Bse3DI GCAATG 3 cut(s) 636, 1386, 1503
BseBI CCWGG 1 cut(s) 400
BseCI ATCGAT 1 cut(s) 234
BseDI CCNNGG 5 cut(s) 183, 399, 661, 1102, 1291
BseGI GGATG 3 cut(s) 424, 1461, 1581
BseLI CCNNNNNNNGG 3 cut(s) 400, 1160, 1572
BseMI GCAATG 3 cut(s) 636, 1386, 1503
BseMII CTCAG 2 cut(s) 760, 1718
BseNI ACTGG 7 cut(s) 810, 1011, 1124, 1147, 1440, 1528, 1726
BseRI GAGGAG 1 cut(s) 885
BseYI CCCAGC 1 cut(s) 1328
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 3 cut(s) 182, 1101, 1664
BshVI ATCGAT 1 cut(s) 234
BsiHKAI GWGCWC 3 cut(s) 203, 1282, 1386
BsiHKCI CYCGRG 1 cut(s) 1292
BsiSI CCGG 2 cut(s) 1339, 1518
BslI CCNNNNNNNGG 3 cut(s) 400, 1160, 1572
BsmAI GTCTC 2 cut(s) 49, 981
BsmI GAATGC 1 cut(s) 1508
BsnI GGCC 3 cut(s) 182, 1101, 1664
BsoBI CYCGRG 1 cut(s) 1292
Bsp119I TTCGAA 1 cut(s) 122
Bsp1286I GDGCHC 4 cut(s) 203, 550, 1282, 1386
Bsp143I GATC 6 cut(s) 574, 1036, 1191, 1462, 1686, 1707
Bsp68I TCGCGA 1 cut(s) 68
BspACI CCGC 6 cut(s) 5, 35, 38, 104, 535, 826
BspANI GGCC 3 cut(s) 182, 1101, 1664
BspCNI CTCAG 2 cut(s) 759, 1717
BspDI ATCGAT 1 cut(s) 234
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 4 cut(s) 549, 810, 1038, 1071
BspPI GGATC 5 cut(s) 1031, 1044, 1199, 1681, 1702
BspQI GCTCTTC 1 cut(s) 208
BspT104I TTCGAA 1 cut(s) 122
BsrDI GCAATG 3 cut(s) 636, 1386, 1503
BsrFI RCCGGY 1 cut(s) 1517
BsrI ACTGG 7 cut(s) 810, 1011, 1124, 1147, 1440, 1528, 1726
BssAI RCCGGY 1 cut(s) 1517
BssECI CCNNGG 5 cut(s) 183, 399, 661, 1102, 1291
BssMI GATC 6 cut(s) 574, 1036, 1191, 1462, 1686, 1707
BssSI CACGAG 1 cut(s) 173
BssT1I CCWWGG 2 cut(s) 661, 1102
Bst2BI CACGAG 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 400
Bst4CI ACNGT 2 cut(s) 1217, 1699
Bst6I CTCTTC 3 cut(s) 47, 208, 465
BstAPI GCANNNNNTGC 2 cut(s) 863, 1514
BstBI TTCGAA 1 cut(s) 122
BstC8I GCNNGC 3 cut(s) 457, 1519, 1633
BstDEI CTNAG 2 cut(s) 746, 1704
BstF5I GGATG 3 cut(s) 424, 1461, 1581
BstFNI CGCG 1 cut(s) 68
BstHHI GCGC 1 cut(s) 629
BstKTI GATC 6 cut(s) 577, 1039, 1194, 1465, 1689, 1710
BstMAI GTCTC 2 cut(s) 49, 981
BstMBI GATC 6 cut(s) 574, 1036, 1191, 1462, 1686, 1707
BstMWI GCNNNNNNNGC 8 cut(s) 359, 863, 872, 1514, 1562, 1637, 1649, 1661
BstNI CCWGG 1 cut(s) 400
BstNSI RCATGY 1 cut(s) 587
BstSCI CCNGG 2 cut(s) 398, 1338
BstUI CGCG 1 cut(s) 68
BstX2I RGATCY 5 cut(s) 574, 1036, 1191, 1686, 1707
BstXI CCANNNNNNTGG 1 cut(s) 784
BstYI RGATCY 5 cut(s) 574, 1036, 1191, 1686, 1707
Bsu15I ATCGAT 1 cut(s) 234
BsuI GTATCC 2 cut(s) 443, 1326
BsuRI GGCC 3 cut(s) 182, 1101, 1664
BsuTUI ATCGAT 1 cut(s) 234
BtgZI GCGATG 1 cut(s) 49
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 3 cut(s) 424, 1461, 1581
BtsIMutI CAGTG 4 cut(s) 1018, 1433, 1521, 1719
BtuMI TCGCGA 1 cut(s) 68
Cac8I GCNNGC 3 cut(s) 457, 1519, 1633
CfoI GCGC 1 cut(s) 629
Cfr10I RCCGGY 1 cut(s) 1517
Cfr13I GGNCC 2 cut(s) 180, 952
ClaI ATCGAT 1 cut(s) 234
Csp6I GTAC 2 cut(s) 823, 1244
CspCI CAANNNNNGTGG 2 cut(s) 1680, 1715
CviAII CATG 8 cut(s) 164, 584, 784, 876, 920, 1000, 1159, 1570
CviQI GTAC 2 cut(s) 823, 1244
DdeI CTNAG 2 cut(s) 746, 1704
DpnI GATC 6 cut(s) 576, 1038, 1193, 1464, 1688, 1709
DpnII GATC 6 cut(s) 574, 1036, 1191, 1462, 1686, 1707
DraI TTTAAA 1 cut(s) 1132
DraIII CACNNNGTG 1 cut(s) 1277
EaeI YGGCCR 1 cut(s) 1662
Eam1104I CTCTTC 3 cut(s) 47, 208, 465
EarI CTCTTC 3 cut(s) 47, 208, 465
Ecl136II GAGCTC 2 cut(s) 201, 1384
Eco130I CCWWGG 2 cut(s) 661, 1102
Eco24I GRGCYC 3 cut(s) 203, 550, 1386
Eco32I GATATC 1 cut(s) 930
Eco47I GGWCC 1 cut(s) 952
Eco53kI GAGCTC 2 cut(s) 201, 1384
Eco57I CTGAAG 1 cut(s) 615
Eco88I CYCGRG 1 cut(s) 1292
EcoICRI GAGCTC 2 cut(s) 201, 1384
EcoO109I RGGNCCY 1 cut(s) 952
EcoRII CCWGG 1 cut(s) 398
EcoRV GATATC 1 cut(s) 930
EcoT14I CCWWGG 2 cut(s) 661, 1102
EcoT38I GRGCYC 3 cut(s) 203, 550, 1386
ErhI CCWWGG 2 cut(s) 661, 1102
FaeI CATG 8 cut(s) 167, 587, 787, 879, 923, 1003, 1162, 1573
FalI AAGNNNNNCTT 2 cut(s) 187, 219
FatI CATG 8 cut(s) 163, 583, 783, 875, 919, 999, 1158, 1569
FokI GGATG 3 cut(s) 431, 1468, 1588
FriOI GRGCYC 3 cut(s) 203, 550, 1386
FspBI CTAG 5 cut(s) 294, 758, 836, 992, 1085
GlaI GCGC 1 cut(s) 628
GsaI CCCAGC 1 cut(s) 1332
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 3 cut(s) 182, 1101, 1664
HapII CCGG 2 cut(s) 1339, 1518
HhaI GCGC 1 cut(s) 629
Hin1II CATG 8 cut(s) 167, 587, 787, 879, 923, 1003, 1162, 1573
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 8 cut(s) 251, 473, 754, 880, 916, 1220, 1297, 1484
HpaII CCGG 2 cut(s) 1339, 1518
HphI GGTGA 5 cut(s) 69, 650, 682, 902, 1229
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 9 cut(s) 699, 768, 820, 927, 1060, 1225, 1489, 1607, 1707
Hpy8I GTNNAC 1 cut(s) 48
Hpy99I CGWCG 1 cut(s) 151
HpyAV CCTTC 5 cut(s) 222, 561, 943, 975, 1576
HpyCH4III ACNGT 2 cut(s) 1217, 1699
HpyCH4IV ACGT 2 cut(s) 60, 1377
HpyCH4V TGCA 8 cut(s) 32, 362, 587, 866, 1349, 1391, 1442, 1508
HpyF10VI GCNNNNNNNGC 8 cut(s) 359, 863, 872, 1514, 1562, 1637, 1649, 1661
HpyF3I CTNAG 2 cut(s) 746, 1704
HpySE526I ACGT 2 cut(s) 60, 1377
Hsp92II CATG 8 cut(s) 167, 587, 787, 879, 923, 1003, 1162, 1573
HspAI GCGC 1 cut(s) 627
KroI GCCGGC 1 cut(s) 1517
KroNI GCCGGC 1 cut(s) 1519
Kzo9I GATC 6 cut(s) 574, 1036, 1191, 1462, 1686, 1707
LguI GCTCTTC 1 cut(s) 208
LmnI GCTCC 6 cut(s) 198, 537, 553, 872, 1075, 1106
LweI GCATC 6 cut(s) 49, 468, 643, 1192, 1351, 1524
MaeI CTAG 5 cut(s) 294, 758, 836, 992, 1085
MaeII ACGT 2 cut(s) 60, 1377
MaeIII GTNAC 6 cut(s) 136, 266, 302, 676, 733, 895
MalI GATC 6 cut(s) 576, 1038, 1193, 1464, 1688, 1709
MboI GATC 6 cut(s) 574, 1036, 1191, 1462, 1686, 1707
MboII GAAGA 7 cut(s) 64, 195, 198, 207, 482, 569, 1667
MfeI CAATTG 1 cut(s) 885
MflI RGATCY 5 cut(s) 574, 1036, 1191, 1686, 1707
MhlI GDGCHC 4 cut(s) 203, 550, 1282, 1386
MluCI AATT 3 cut(s) 316, 885, 1490
MlyI GAGTC 3 cut(s) 245, 482, 874
MroNI GCCGGC 1 cut(s) 1517
MseI TTAA 5 cut(s) 390, 486, 669, 794, 1131
MslI CAYNNNNRTG 4 cut(s) 715, 782, 1215, 1574
MspA1I CMGCKG 3 cut(s) 383, 593, 1328
MspI CCGG 2 cut(s) 1339, 1518
MspR9I CCNGG 2 cut(s) 400, 1340
MunI CAATTG 1 cut(s) 885
Mva1269I GAATGC 1 cut(s) 1508
MvaI CCWGG 1 cut(s) 400
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 8 cut(s) 359, 863, 872, 1514, 1562, 1637, 1649, 1661
NaeI GCCGGC 1 cut(s) 1519
NciI CCSGG 1 cut(s) 1340
NdeII GATC 6 cut(s) 574, 1036, 1191, 1462, 1686, 1707
NgoMIV GCCGGC 1 cut(s) 1517
NlaIII CATG 8 cut(s) 167, 587, 787, 879, 923, 1003, 1162, 1573
NlaIV GGNNCC 4 cut(s) 549, 810, 1038, 1071
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 2 cut(s) 266, 733
NruI TCGCGA 1 cut(s) 68
NspI RCATGY 1 cut(s) 587
NspV TTCGAA 1 cut(s) 122
PciSI GCTCTTC 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 1 cut(s) 1508
PdiI GCCGGC 1 cut(s) 1519
PfeI GAWTC 5 cut(s) 754, 916, 1220, 1297, 1484
PfoI TCCNGGA 1 cut(s) 1338
PleI GAGTC 3 cut(s) 245, 481, 874
PpsI GAGTC 3 cut(s) 245, 481, 874
PpuMI RGGWCCY 1 cut(s) 952
Psp124BI GAGCTC 2 cut(s) 203, 1386
Psp1406I AACGTT 1 cut(s) 1377
Psp5II RGGWCCY 1 cut(s) 952
Psp6I CCWGG 1 cut(s) 398
PspFI CCCAGC 1 cut(s) 1328
PspGI CCWGG 1 cut(s) 398
PspN4I GGNNCC 4 cut(s) 549, 810, 1038, 1071
PspPI GGNCC 2 cut(s) 180, 952
PspPPI RGGWCCY 1 cut(s) 952
PsuI RGATCY 5 cut(s) 574, 1036, 1191, 1686, 1707
PvuII CAGCTG 3 cut(s) 383, 593, 1328
RruI TCGCGA 1 cut(s) 68
RsaI GTAC 2 cut(s) 824, 1245
RsaNI GTAC 2 cut(s) 823, 1244
RseI CAYNNNNRTG 4 cut(s) 715, 782, 1215, 1574
SacI GAGCTC 2 cut(s) 203, 1386
SapI GCTCTTC 1 cut(s) 208
SaqAI TTAA 5 cut(s) 390, 486, 669, 794, 1131
Sau3AI GATC 6 cut(s) 574, 1036, 1191, 1462, 1686, 1707
Sau96I GGNCC 2 cut(s) 180, 952
SchI GAGTC 3 cut(s) 245, 482, 874
ScrFI CCNGG 2 cut(s) 400, 1340
SduI GDGCHC 4 cut(s) 203, 550, 1282, 1386
SfaNI GCATC 6 cut(s) 49, 468, 643, 1192, 1351, 1524
SfuI TTCGAA 1 cut(s) 122
SinI GGWCC 1 cut(s) 952
SmiMI CAYNNNNRTG 4 cut(s) 715, 782, 1215, 1574
SmlI CTYRAG 3 cut(s) 1248, 1319, 1479
SmoI CTYRAG 3 cut(s) 1248, 1319, 1479
Sse9I AATT 3 cut(s) 316, 885, 1490
SsiI CCGC 6 cut(s) 5, 35, 38, 104, 535, 826
SspMI CTAG 5 cut(s) 294, 758, 836, 992, 1085
SstI GAGCTC 2 cut(s) 203, 1386
StyD4I CCNGG 2 cut(s) 398, 1338
StyI CCWWGG 2 cut(s) 661, 1102
TaaI ACNGT 2 cut(s) 1217, 1699
TaiI ACGT 2 cut(s) 63, 1380
TaqI TCGA 9 cut(s) 122, 146, 222, 234, 752, 1261, 1532, 1587, 1683
TasI AATT 3 cut(s) 316, 885, 1490
TauI GCSGC 2 cut(s) 40, 106
TfiI GAWTC 5 cut(s) 754, 916, 1220, 1297, 1484
Tru1I TTAA 5 cut(s) 390, 486, 669, 794, 1131
Tru9I TTAA 5 cut(s) 390, 486, 669, 794, 1131
TscAI CASTG 4 cut(s) 1018, 1440, 1528, 1726
TseFI GTSAC 2 cut(s) 266, 733
Tsp45I GTSAC 2 cut(s) 266, 733
TspGWI ACGGA 1 cut(s) 1297
TspRI CASTG 4 cut(s) 1018, 1440, 1528, 1726
VpaK11BI GGWCC 1 cut(s) 952
XapI RAATTY 1 cut(s) 1490
XbaI TCTAGA 1 cut(s) 757
XceI RCATGY 1 cut(s) 587
XspI CTAG 5 cut(s) 294, 758, 836, 992, 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.