Rh6AG077200

Citrate transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
11144759 .. 11198684
53926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG077200.1

Sequence Viewer

Length: 1440 bp
ATGAGCTCAATTGATTTTGAGGCCAGTTACAAGCCAAAGACTTATTTGTGGAAAGCTATAGCAATATTTGCAGCAGCTGCAACAGGGACGGTGGCAATTAACCACTCATGGGTTGCTGCTAATCAGGATGTTGCCATGGCACTGCTATTTGGAATTGGATATGCAGGCATTATTTTTGAAGAATCTCTGGCCTTCAACAAGAGTGGAGTAGGTTTGATAATGGCTGTATGCTTGTGGATAGTGAGAAGTATTGGTGCTCCTTCAACTGATATAGCTGTTGCAGAATTACAACATGCATCTGCTGAAGTCAGTGAAATAGTGTTTTTCCTGCTTGGTGCAATGACAATTGTAGAGATAGTTGATTCTCATCAAGGATTTAAGCTGGTCACTGACAAAATAACTACTCGAAAGCCAAGAACACTCCTCTGGGTGGTTGGTTTTGTGACTTTCTTCCTTGGTTCAATTCTTGACAACCTGACGTGTACCATTGTCATGGTCTCTTTATTGCAAAAACTAGTGCCTCCCTCAGACTTCCGCAAGCTTTTAGGAGGAGTTGTTGTCATAGCTGCAAATGCTGGTGGTACGTGGACTCCTATTGGTGATGTTACCACCACTATGTTATGGATGCATGGTCAGATATCAACAGTGGAGACAATGAAGGGATTATTTATACCAGCAGTCGTTTCTGTTGCTGTTCCACTGGCACTTTTGTCCCTTACAAGTGAAGCAAGTGGTAATGGACCAGACACATCCAATGTTATGGCATCCGAACAGATGGCTCCCCGGGGACAGCTTGTTTTCTGTGTAGGCTTCGGAGCTTTGATTTTTGTTCCAGTTTTCAAGTCCCTAACTGGTTTGCCTCCTTACATGGGTATGCTGCTGGCACTTGGAGTCCTTTGGATTCTGACTGATGCAATCCACTATGGTGAATTGGAAAGACAAAGGTTGAAAGTACCTCAGGCTTTGTCACGGATTGACACTCAAGGAGCACTTTTCTTCCTTGGAATTCTTTTATCTGTTAGCAGCCTGGAGGCGGCAGGAATTCTTCGGGAATTAGCAAACTACCTGGATGCTCATATTCCCAATATTGAACTGACTGCAATTTCAATAGGAATTGTCTCAGCAATTATAGACAATGTTCCACTGGTTGCTGCAGCTATGGGGATGTACGATGTTGCCTCTTTTCCCCAGGACTCTGAGTTTTGGCAGCTGGTTGCGTATTGTGCTGGTACTGGTGGATCCATGCTAGTTATTGGTTCTGCAGCCGGAGTTGCTTTTATGGGAATGGAAAAGGTGGACTTCTTCTGGTACTTTCGCAAGGTGAGTGGGTTTGCTTTTGCCGGTTATGCTGCTGGTATTGCAGCCTATTTAGCGGCTCAAAACCTCCACATCTCAATACCAACAACTGTAGCTCAGGTTCCTTTTCTTTTTGGATCCTGA

Protein Analysis

479

Amino Acids

50.97

Weight (kDa)

5.27

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CitMHS PF03600 55 - 395 1.3e-26 Citrate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 535, 1034, 1373
AclWI GGATC 3 cut(s) 1233, 1246, 1428
AcsI RAATTY 2 cut(s) 1005, 1041
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 6 cut(s) 484, 583, 954, 1169, 1231, 1310
AfiI CCNNNNNNNGG 4 cut(s) 109, 430, 869, 1033
AflIII ACRYGT 1 cut(s) 479
AgsI TTSAA 8 cut(s) 179, 196, 264, 462, 841, 949, 1091, 1107
AhlI ACTAGT 1 cut(s) 514
AjiI CACGTC 1 cut(s) 480
AjnI CCWGG 3 cut(s) 1026, 1065, 1188
AleI CACNNNNGTG 1 cut(s) 924
Alw21I GWGCWC 3 cut(s) 8, 259, 991
Alw26I GTCTC 3 cut(s) 502, 644, 1123
AlwI GGATC 3 cut(s) 1233, 1246, 1428
AlwNI CAGNNNCTG 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 783
AoxI GGCC 2 cut(s) 21, 189
ApoI RAATTY 2 cut(s) 1005, 1041
AspS9I GGNCC 1 cut(s) 740
AsuC2I CCSGG 2 cut(s) 784, 785
AsuHPI GGTGA 3 cut(s) 611, 938, 1333
AvaI CYCGRG 1 cut(s) 783
AvaII GGWCC 1 cut(s) 740
AxyI CCTNAGG 1 cut(s) 957
BamHI GGATCC 2 cut(s) 1238, 1433
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 3 cut(s) 8, 259, 991
BccI CCATC 1 cut(s) 769
BciT130I CCWGG 3 cut(s) 1028, 1067, 1190
BcnI CCSGG 2 cut(s) 784, 785
BcoDI GTCTC 3 cut(s) 502, 644, 1123
BcuI ACTAGT 1 cut(s) 514
BfaI CTAG 2 cut(s) 515, 1247
BfmI CTRYAG 4 cut(s) 57, 1152, 1260, 1407
Bme1390I CCNGG 5 cut(s) 784, 785, 1028, 1067, 1190
Bme18I GGWCC 1 cut(s) 740
BmeT110I CYCGRG 1 cut(s) 783
BmgBI CACGTC 1 cut(s) 480
BmgT120I GGNCC 1 cut(s) 740
BmiI GGNNCC 4 cut(s) 780, 1240, 1419, 1435
BmrFI CCNGG 5 cut(s) 784, 785, 1028, 1067, 1190
BmsI GCATC 5 cut(s) 305, 615, 773, 901, 1060
BpmI CTGGAG 1 cut(s) 1049
Bpu10I CCTNAGC 1 cut(s) 1413
BpuEI CTTGAG 1 cut(s) 966
BpuMI CCSGG 2 cut(s) 784, 785
BsaAI YACGTR 1 cut(s) 585
BsaBI GATNNNNATC 1 cut(s) 366
BsaI GGTCTC 1 cut(s) 502
BsaJI CCNNGG 7 cut(s) 135, 454, 782, 783, 784, 1000, 1188
BsaXI ACNNNNNCTCC 6 cut(s) 540, 543, 570, 573, 574, 604
Bsc4I CCNNNNNNNGG 4 cut(s) 109, 430, 869, 1033
Bse118I RCCGGY 1 cut(s) 1340
Bse1I ACTGG 6 cut(s) 24, 705, 833, 856, 1149, 1237
Bse21I CCTNAGG 1 cut(s) 957
Bse3DI GCAATG 1 cut(s) 345
Bse8I GATNNNNATC 1 cut(s) 366
BseBI CCWGG 3 cut(s) 1028, 1067, 1190
BseDI CCNNGG 7 cut(s) 135, 454, 782, 783, 784, 1000, 1188
BseGI GGATG 6 cut(s) 133, 630, 749, 764, 1075, 1170
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 4 cut(s) 109, 430, 869, 1033
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 5 cut(s) 540, 971, 1134, 1188, 1427
BseNI ACTGG 6 cut(s) 24, 705, 833, 856, 1149, 1237
BseRI GAGGAG 2 cut(s) 413, 564
BshFI GGCC 2 cut(s) 23, 191
BsiHKAI GWGCWC 3 cut(s) 8, 259, 991
BsiHKCI CYCGRG 1 cut(s) 783
BsiSI CCGG 3 cut(s) 784, 1266, 1341
BslFI GGGAC 4 cut(s) 100, 697, 801, 829
BslI CCNNNNNNNGG 4 cut(s) 109, 430, 869, 1033
BsmAI GTCTC 3 cut(s) 502, 644, 1123
BsmFI GGGAC 4 cut(s) 100, 697, 801, 829
BsnI GGCC 2 cut(s) 23, 191
Bso31I GGTCTC 1 cut(s) 502
BsoBI CYCGRG 1 cut(s) 783
Bsp1286I GDGCHC 3 cut(s) 8, 259, 991
Bsp143I GATC 2 cut(s) 1238, 1433
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 3 cut(s) 535, 1034, 1373
BspANI GGCC 2 cut(s) 23, 191
BspCNI CTCAG 5 cut(s) 539, 970, 1133, 1189, 1426
BspLI GGNNCC 4 cut(s) 780, 1240, 1419, 1435
BspMAI CTGCAG 2 cut(s) 1156, 1264
BspPI GGATC 3 cut(s) 1233, 1246, 1428
BspTNI GGTCTC 1 cut(s) 502
BsrDI GCAATG 1 cut(s) 345
BsrFI RCCGGY 1 cut(s) 1340
BsrI ACTGG 6 cut(s) 24, 705, 833, 856, 1149, 1237
BssAI RCCGGY 1 cut(s) 1340
BssECI CCNNGG 7 cut(s) 135, 454, 782, 783, 784, 1000, 1188
BssMI GATC 2 cut(s) 1238, 1433
BssT1I CCWWGG 3 cut(s) 135, 454, 1000
Bst2UI CCWGG 3 cut(s) 1028, 1067, 1190
Bst4CI ACNGT 3 cut(s) 91, 646, 1408
BstAPI GCANNNNNTGC 2 cut(s) 68, 77
BstBAI YACGTR 1 cut(s) 585
BstC8I GCNNGC 3 cut(s) 166, 539, 882
BstDEI CTNAG 5 cut(s) 526, 957, 1120, 1197, 1413
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 6 cut(s) 133, 630, 749, 764, 1075, 1170
BstKTI GATC 2 cut(s) 1241, 1436
BstMAI GTCTC 3 cut(s) 502, 644, 1123
BstMBI GATC 2 cut(s) 1238, 1433
BstMWI GCNNNNNNNGC 8 cut(s) 68, 77, 572, 1223, 1271, 1346, 1358, 1370
BstNI CCWGG 3 cut(s) 1028, 1067, 1190
BstNSI RCATGY 1 cut(s) 296
BstSCI CCNGG 5 cut(s) 782, 783, 1026, 1065, 1188
BstSFI CTRYAG 4 cut(s) 57, 1152, 1260, 1407
BstX2I RGATCY 2 cut(s) 1238, 1433
BstXI CCANNNNNNTGG 2 cut(s) 493, 760
BstYI RGATCY 2 cut(s) 1238, 1433
Bsu36I CCTNAGG 1 cut(s) 957
BsuRI GGCC 2 cut(s) 23, 191
BtgI CCRYGG 1 cut(s) 135
BtrI CACGTC 1 cut(s) 480
BtsCI GGATG 6 cut(s) 133, 630, 749, 764, 1075, 1170
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 6 cut(s) 140, 316, 387, 651, 698, 1142
Cac8I GCNNGC 3 cut(s) 166, 539, 882
CaiI CAGNNNCTG 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 1340
Cfr13I GGNCC 1 cut(s) 740
Cfr9I CCCGGG 1 cut(s) 783
Csp6I GTAC 6 cut(s) 483, 582, 953, 1168, 1230, 1309
CspCI CAANNNNNGTGG 4 cut(s) 184, 219, 1306, 1341
CviAII CATG 7 cut(s) 108, 136, 293, 493, 629, 868, 1243
CviQI GTAC 6 cut(s) 483, 582, 953, 1168, 1230, 1309
DdeI CTNAG 5 cut(s) 526, 957, 1120, 1197, 1413
DpnI GATC 2 cut(s) 1240, 1435
DpnII GATC 2 cut(s) 1238, 1433
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 3 cut(s) 135, 454, 1000
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 502
Eco32I GATATC 1 cut(s) 639
Eco47I GGWCC 1 cut(s) 740
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 324
Eco81I CCTNAGG 1 cut(s) 957
Eco88I CYCGRG 1 cut(s) 783
EcoICRI GAGCTC 1 cut(s) 6
EcoRI GAATTC 2 cut(s) 1005, 1041
EcoRII CCWGG 3 cut(s) 1026, 1065, 1188
EcoRV GATATC 1 cut(s) 639
EcoT14I CCWWGG 3 cut(s) 135, 454, 1000
EcoT22I ATGCAT 2 cut(s) 298, 630
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 3 cut(s) 135, 454, 1000
FaeI CATG 7 cut(s) 111, 139, 296, 496, 632, 871, 1246
FalI AAGNNNNNCTT 4 cut(s) 975, 1007, 1283, 1315
FaqI GGGAC 4 cut(s) 100, 697, 801, 829
FatI CATG 7 cut(s) 107, 135, 292, 492, 628, 867, 1242
FokI GGATG 6 cut(s) 140, 637, 736, 751, 1082, 1177
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 2 cut(s) 515, 1247
GsuI CTGGAG 1 cut(s) 1049
HaeIII GGCC 2 cut(s) 23, 191
HapII CCGG 3 cut(s) 784, 1266, 1341
Hin1II CATG 7 cut(s) 111, 139, 296, 496, 632, 871, 1246
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 6 cut(s) 182, 362, 589, 891, 901, 1193
HpaII CCGG 3 cut(s) 784, 1266, 1341
HphI GGTGA 3 cut(s) 611, 938, 1333
Hpy166II GTNNAC 3 cut(s) 483, 588, 1297
Hpy188I TCNGA 6 cut(s) 529, 636, 769, 815, 906, 1198
Hpy188III TCNNGA 4 cut(s) 125, 467, 1049, 1437
Hpy8I GTNNAC 3 cut(s) 483, 588, 1297
HpyAV CCTTC 3 cut(s) 202, 270, 652
HpyCH4III ACNGT 3 cut(s) 91, 646, 1408
HpyCH4IV ACGT 2 cut(s) 479, 584
HpyF10VI GCNNNNNNNGC 8 cut(s) 68, 77, 572, 1223, 1271, 1346, 1358, 1370
HpyF3I CTNAG 5 cut(s) 526, 957, 1120, 1197, 1413
HpySE526I ACGT 2 cut(s) 479, 584
Hsp92II CATG 7 cut(s) 111, 139, 296, 496, 632, 871, 1246
Kzo9I GATC 2 cut(s) 1238, 1433
LmnI GCTCC 4 cut(s) 262, 784, 815, 986
LweI GCATC 5 cut(s) 305, 615, 773, 901, 1060
MaeI CTAG 2 cut(s) 515, 1247
MaeII ACGT 2 cut(s) 479, 584
MaeIII GTNAC 5 cut(s) 26, 385, 442, 604, 966
MalI GATC 2 cut(s) 1240, 1435
MboI GATC 2 cut(s) 1238, 1433
MboII GAAGA 5 cut(s) 191, 442, 988, 1037, 1294
MfeI CAATTG 2 cut(s) 9, 345
MflI RGATCY 2 cut(s) 1238, 1433
MhlI GDGCHC 3 cut(s) 8, 259, 991
MlyI GAGTC 3 cut(s) 583, 900, 1187
Mph1103I ATGCAT 2 cut(s) 298, 630
MseI TTAA 2 cut(s) 99, 378
MslI CAYNNNNRTG 4 cut(s) 491, 614, 872, 924
MspA1I CMGCKG 2 cut(s) 77, 1210
MspI CCGG 3 cut(s) 784, 1266, 1341
MspR9I CCNGG 5 cut(s) 784, 785, 1028, 1067, 1190
MunI CAATTG 2 cut(s) 9, 345
MvaI CCWGG 3 cut(s) 1028, 1067, 1190
MwoI GCNNNNNNNGC 8 cut(s) 68, 77, 572, 1223, 1271, 1346, 1358, 1370
NciI CCSGG 2 cut(s) 784, 785
NcoI CCATGG 1 cut(s) 135
NdeII GATC 2 cut(s) 1238, 1433
NlaIII CATG 7 cut(s) 111, 139, 296, 496, 632, 871, 1246
NlaIV GGNNCC 4 cut(s) 780, 1240, 1419, 1435
NmuCI GTSAC 3 cut(s) 385, 442, 966
NsiI ATGCAT 2 cut(s) 298, 630
NspI RCATGY 1 cut(s) 296
OliI CACNNNNGTG 1 cut(s) 924
PfeI GAWTC 3 cut(s) 182, 362, 901
PleI GAGTC 3 cut(s) 583, 899, 1187
PpsI GAGTC 3 cut(s) 583, 899, 1187
Ppu21I YACGTR 1 cut(s) 585
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 3 cut(s) 1026, 1065, 1188
PspGI CCWGG 3 cut(s) 1026, 1065, 1188
PspN4I GGNNCC 4 cut(s) 780, 1240, 1419, 1435
PspPI GGNCC 1 cut(s) 740
PsrI GAACNNNNNNTAC 2 cut(s) 1401, 1433
PstI CTGCAG 2 cut(s) 1156, 1264
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 2 cut(s) 1238, 1433
PvuII CAGCTG 2 cut(s) 77, 1210
RsaI GTAC 6 cut(s) 484, 583, 954, 1169, 1231, 1310
RsaNI GTAC 6 cut(s) 483, 582, 953, 1168, 1230, 1309
RseI CAYNNNNRTG 4 cut(s) 491, 614, 872, 924
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 99, 378
Sau3AI GATC 2 cut(s) 1238, 1433
Sau96I GGNCC 1 cut(s) 740
SchI GAGTC 3 cut(s) 583, 900, 1187
ScrFI CCNGG 5 cut(s) 784, 785, 1028, 1067, 1190
SduI GDGCHC 3 cut(s) 8, 259, 991
SfaNI GCATC 5 cut(s) 305, 615, 773, 901, 1060
SfcI CTRYAG 4 cut(s) 57, 1152, 1260, 1407
SinI GGWCC 1 cut(s) 740
SmaI CCCGGG 1 cut(s) 785
SmiMI CAYNNNNRTG 4 cut(s) 491, 614, 872, 924
SmlI CTYRAG 1 cut(s) 981
SmoI CTYRAG 1 cut(s) 981
SpeI ACTAGT 1 cut(s) 514
SsiI CCGC 3 cut(s) 535, 1034, 1373
SspI AATATT 2 cut(s) 66, 1087
SspMI CTAG 2 cut(s) 515, 1247
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 5 cut(s) 782, 783, 1026, 1065, 1188
StyI CCWWGG 3 cut(s) 135, 454, 1000
TaaI ACNGT 3 cut(s) 91, 646, 1408
TaiI ACGT 2 cut(s) 482, 587
TaqI TCGA 1 cut(s) 406
TauI GCSGC 2 cut(s) 1037, 1376
TfiI GAWTC 3 cut(s) 182, 362, 901
Tru1I TTAA 2 cut(s) 99, 378
Tru9I TTAA 2 cut(s) 99, 378
TscAI CASTG 6 cut(s) 147, 316, 394, 651, 705, 1149
TseFI GTSAC 3 cut(s) 385, 442, 966
Tsp45I GTSAC 3 cut(s) 385, 442, 966
TspDTI ATGAA 1 cut(s) 671
TspGWI ACGGA 1 cut(s) 985
TspMI CCCGGG 1 cut(s) 783
TspRI CASTG 6 cut(s) 147, 316, 394, 651, 705, 1149
VpaK11BI GGWCC 1 cut(s) 740
XapI RAATTY 2 cut(s) 1005, 1041
XceI RCATGY 1 cut(s) 296
XmaI CCCGGG 1 cut(s) 783
XspI CTAG 2 cut(s) 515, 1247
Zsp2I ATGCAT 2 cut(s) 298, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.