Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003147

Physical Location & Seq

Genomic Coordinates Forward (+)

60205935 .. 60212339

Gene Structure 6405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00209940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1842 bp

ATGCGGTGGGTGTGCGTTGGCTTGTTTGCGCAGCGGGATGCTTCGGTGGCAGCAGGCTGGAACGCATGGCTGCAGGGAGGGGCAGCAGGGGCTGCTGTGCAAGGTTGCAAGTGCACGGCCGCGCGGGCTGCAGCGAAGGCTCGGCTAGCTCGGGCTAGGGGCGCTTTAGGCCCAAGATTGCTGGGCAATGGAATGCTGGTCAGAGGCGAAGAGAAACCCAGAGGTTCGGGTTCGGTTCAGCTGCCCAAAGCTCAGTCCCAGTCTGAGAAAGAGTTGCGGGAGTTGACACCAAGTTCTGGATCATGTGATCCTTTATGTTCAGTTGACGAAATGAGCTCAATTGATTTTGAGGCCAGTTACAAGCCAAAGACTTATTTGCGGAAAGCCATAGCAATATTTGCGGCAGCTGCAACAGGGACGGTGGCAATTAAACACTCATGGGTTGCTGCTAATCAGGATGTTGCCATGGCACTGGTATTTGGAATAGGATATGCAGGCATTATTTTTGAAGAATCTTTGGCCTTCAACAAGAGTGGAGTAGGTTTGATAATGGCTGTATGCTTGTGGACAGTGAGAAGTATTGGTGCTCCTTCAACTGATATAGCTGTTGCAGAGTTACAAAATGCATATGCTGAAGTCAGTGAAATAGTGTTTTTCCTGCTTGGTGCAATGGCAATTGTAGAGATAGTTGATTCTCATCAAGGATTTAAGCTGGTCACTGACAATATAACTACTCGAAAGCCAAGAACACTCCTCTGGGTGGTTGGTTTTGTGACTTTCTTTCTTGGTTCAATTCTTGACAATCTGACGTGTACCATTGTCATGGTCTCTTTATTGCGAACACTAGTGCCTCCCTCAGACTTCCGCAAGTATGTGTTACCATCTACCATCTTTTATTCTCTGAAAACTCCTGACCACTCTTGGAAGGAGGAGGAGGGCAGGATTTTAGGAGGAGTTGTTGTCATAGCTGCAAATGCTGGTGGTACGTGGACTCCTATTGGTGATGTTACCACCACTATGTTATGGATGCATGGTCAGATATCAACAGTGGAGACAATGAAGGGATTATTTATACCAGCAGTCGTTTCTCTTGCTGTTCCGCTGGCACTTTTGTCCCTTAGAAGTGAAGCAAGTGGTGATGGACCAGACACATCCAATGTTATGGCATCCGAACAGATGGCTCCCCGGGGACAGCTTGTTTTCTGTGTAGGCTTTGGAGCTTTGATTTTTGTTCCAGTTTTCAAGTCCCTAACTGGTTTACCTCCTTACATGGGTATGCTGCTGGGACTTGGAGTCCTTTGGATTCTGACTGATACAATCCACTATGGTGAATCAGAAAGACAAAGGTTGAAAGTACCTCAGGCTTTGTCACGGATTGACACTCAAGGAGCACTTTTCTTCCTTGGAATTCTTTTATCTGTTAGCAGCCTGGAGGCGGCAGGAATTCTTCAGGAATTAGCAAACTACCTGGATGCTCATATTCCCAATATTGAACTGACTGCAATTTCAATAGGAATTGTCTCAGCAATTATAGACAATGTTCCACTGGTTGCTGCAGCTATGGGGATGTACGATGTTGCCTCTTTTCCCCAGGACTCTGAGTTTTGGCAGCTGGTTGCATATTGTGCTGGTACTGGTGGATCCATGCTAGTTATTGGTTCTGCAGCCGGAGTTGCTTTTATGGGGATGGAAAAGGTGGACTTCTTCTGGTATTTTCGCAAGGTGAGTGGGTTTGCCTTTGCCGGTTATGCTGCTGGTATTGCAGCCTATTTAGCGGCCCAAAACCTCCACATCTCAATACCAACAACCGTAGCTCATGTTCCTTTTCTTTCTGGATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006820 GO:0006848 GO:0006950 GO:0006970 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0015075 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0015711 GO:0015718 GO:0015849 GO:0022804 GO:0022857 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050833 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CitMHS

Protein Analysis

613

Amino Acids

65.15

Weight (kDa)

6.11

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CitMHS	PF03600	165 - 529	5.3e-24	Citrate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49810 AT3G19490
fragaria_vesca	FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320
malus_domestica	MD05G1088200.v1.1
prunus_persica	Prupe.8G134200_v2.0.a1 Prupe.8G134200_v2.0.a1 Prupe.8G134200_v2.0.a1 Prupe.8G134200_v2.0.a1
pyrus_communis	pycom05g08760 pycom10g08240
rosa_chinensis	RchiOBHm_Chr6g0255461 RchiOBHm_Chr6g0255491 RchiOBHm_Chr6g0255511 RchiOBHm_Chr6g0255521
rosa_laevigata	RLG00000014834 RLG00000014835
rosa_multiflora	Rmu_sc0002360.1_g000008
rosa_roxburghii	Rroxscaffold_7G00209940 Rroxscaffold_7G00209960
rosa_rugosa	Rorug05G0559000 Rorug05G0559100 Rorug05G0559100
rosa_samantha	Rh6AG076700 Rh6AG077100 Rh6AG077200 Rh6BG069500 Rh6BG069800 Rh6CG068500 Rh6DG065300
rosa_wichuraiana	Rw6G006660 Rw6G006680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	30
AccB7I	CCANNNNNTGG	1 cut(s)	296
AccII	CGCG	2 cut(s)	122, 124
AclWI	GGATC	5 cut(s)	302, 307, 1635, 1648, 1830
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	2 cut(s)	1407, 1443
AcuI	CTGAAG	2 cut(s)	654, 1433
AfaI	GTAC	5 cut(s)	814, 985, 1356, 1571, 1633
AfiI	CCNNNNNNNGG	4 cut(s)	296, 760, 1271, 1435
AflIII	ACRYGT	1 cut(s)	809
AgsI	TTSAA	8 cut(s)	509, 526, 594, 792, 1243, 1351, 1493, 1509
AhdI	GACNNNNNGTC	1 cut(s)	1292
AhlI	ACTAGT	1 cut(s)	844
AjiI	CACGTC	1 cut(s)	810
AjnI	CCWGG	3 cut(s)	1428, 1467, 1590
AleI	CACNNNNGTG	1 cut(s)	1326
Alw21I	GWGCWC	4 cut(s)	116, 338, 589, 1393
Alw26I	GTCTC	3 cut(s)	832, 1046, 1525
Alw44I	GTGCAC	1 cut(s)	112
AlwI	GGATC	5 cut(s)	302, 307, 1635, 1648, 1830
AlwNI	CAGNNNCTG	1 cut(s)	92
Ama87I	CYCGRG	2 cut(s)	150, 1185
AoxI	GGCC	5 cut(s)	117, 169, 351, 519, 1776
ApaLI	GTGCAC	1 cut(s)	112
ApoI	RAATTY	2 cut(s)	1407, 1443
AspLEI	GCGC	3 cut(s)	31, 124, 164
AspS9I	GGNCC	3 cut(s)	170, 1142, 1777
AsuC2I	CCSGG	2 cut(s)	1186, 1187
AsuHPI	GGTGA	4 cut(s)	1013, 1148, 1340, 1735
AsuNHI	GCTAGC	1 cut(s)	145
AvaI	CYCGRG	2 cut(s)	150, 1185
AvaII	GGWCC	1 cut(s)	1142
AxyI	CCTNAGG	1 cut(s)	1359
BaeGI	GKGCMC	1 cut(s)	116
BamHI	GGATCC	2 cut(s)	1640, 1835
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	4 cut(s)	116, 338, 589, 1393
BccI	CCATC	5 cut(s)	889, 896, 1133, 1171, 1681
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	3 cut(s)	1430, 1469, 1592
BcnI	CCSGG	2 cut(s)	1186, 1187
BcoDI	GTCTC	3 cut(s)	832, 1046, 1525
BcuI	ACTAGT	1 cut(s)	844
BfaI	CTAG	4 cut(s)	146, 156, 845, 1649
BfmI	CTRYAG	4 cut(s)	71, 129, 1554, 1662
BfoI	RGCGCY	1 cut(s)	165
BglI	GCCNNNNNGGC	1 cut(s)	125
Bme1390I	CCNGG	5 cut(s)	1186, 1187, 1430, 1469, 1592
Bme18I	GGWCC	1 cut(s)	1142
BmeRI	GACNNNNNGTC	1 cut(s)	1292
BmeT110I	CYCGRG	2 cut(s)	150, 1185
BmgBI	CACGTC	1 cut(s)	810
BmgT120I	GGNCC	3 cut(s)	170, 1142, 1777
BmiI	GGNNCC	3 cut(s)	1182, 1642, 1837
BmrFI	CCNGG	5 cut(s)	1186, 1187, 1430, 1469, 1592
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	4 cut(s)	28, 1017, 1175, 1462
BmtI	GCTAGC	1 cut(s)	149
BmuI	ACTGGG	1 cut(s)	253
BpmI	CTGGAG	1 cut(s)	1451
BpuEI	CTTGAG	1 cut(s)	1368
BpuMI	CCSGG	2 cut(s)	1186, 1187
BsaAI	YACGTR	1 cut(s)	987
BsaBI	GATNNNNATC	1 cut(s)	696
BsaI	GGTCTC	1 cut(s)	832
BsaJI	CCNNGG	6 cut(s)	465, 1184, 1185, 1186, 1402, 1590
BsaXI	ACNNNNNCTCC	6 cut(s)	942, 945, 972, 975, 976, 1006
Bsc4I	CCNNNNNNNGG	4 cut(s)	296, 760, 1271, 1435
Bse118I	RCCGGY	1 cut(s)	1742
Bse1I	ACTGG	7 cut(s)	259, 354, 477, 1235, 1258, 1551, 1639
Bse21I	CCTNAGG	1 cut(s)	1359
Bse3DI	GCAATG	2 cut(s)	193, 675
Bse8I	GATNNNNATC	1 cut(s)	696
BseBI	CCWGG	3 cut(s)	1430, 1469, 1592
BseDI	CCNNGG	6 cut(s)	465, 1184, 1185, 1186, 1402, 1590
BseGI	GGATG	8 cut(s)	43, 463, 1032, 1151, 1166, 1477, 1572, 1692
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	4 cut(s)	296, 760, 1271, 1435
BseMI	GCAATG	2 cut(s)	193, 675
BseMII	CTCAG	6 cut(s)	255, 266, 870, 1373, 1536, 1590
BseNI	ACTGG	7 cut(s)	259, 354, 477, 1235, 1258, 1551, 1639
BseRI	GAGGAG	4 cut(s)	743, 944, 947, 966
BseSI	GKGCMC	1 cut(s)	116
BseX3I	CGGCCG	1 cut(s)	117
BseYI	CCCAGC	2 cut(s)	181, 1282
Bsh1236I	CGCG	2 cut(s)	122, 124
Bsh1285I	CGRYCG	1 cut(s)	120
BshFI	GGCC	5 cut(s)	119, 171, 353, 521, 1778
BsiEI	CGRYCG	1 cut(s)	120
BsiHKAI	GWGCWC	4 cut(s)	116, 338, 589, 1393
BsiHKCI	CYCGRG	2 cut(s)	150, 1185
BsiSI	CCGG	3 cut(s)	1186, 1668, 1743
BslFI	GGGAC	6 cut(s)	241, 430, 1099, 1203, 1231, 1299
BslI	CCNNNNNNNGG	4 cut(s)	296, 760, 1271, 1435
BsmAI	GTCTC	3 cut(s)	832, 1046, 1525
BsmFI	GGGAC	6 cut(s)	241, 430, 1099, 1203, 1231, 1299
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	5 cut(s)	119, 171, 353, 521, 1778
Bso31I	GGTCTC	1 cut(s)	832
BsoBI	CYCGRG	2 cut(s)	150, 1185
Bsp1286I	GDGCHC	4 cut(s)	116, 338, 589, 1393
Bsp143I	GATC	4 cut(s)	299, 307, 1640, 1835
Bsp19I	CCATGG	1 cut(s)	465
BspANI	GGCC	5 cut(s)	119, 171, 353, 521, 1778
BspCNI	CTCAG	6 cut(s)	256, 265, 869, 1372, 1535, 1591
BspFNI	CGCG	2 cut(s)	122, 124
BspLI	GGNNCC	3 cut(s)	1182, 1642, 1837
BspMAI	CTGCAG	4 cut(s)	75, 133, 1558, 1666
BspOI	GCTAGC	1 cut(s)	149
BspPI	GGATC	5 cut(s)	302, 307, 1635, 1648, 1830
BspTNI	GGTCTC	1 cut(s)	832
BsrDI	GCAATG	2 cut(s)	193, 675
BsrFI	RCCGGY	1 cut(s)	1742
BsrI	ACTGG	7 cut(s)	259, 354, 477, 1235, 1258, 1551, 1639
BssAI	RCCGGY	1 cut(s)	1742
BssECI	CCNNGG	6 cut(s)	465, 1184, 1185, 1186, 1402, 1590
BssMI	GATC	4 cut(s)	299, 307, 1640, 1835
BssT1I	CCWWGG	2 cut(s)	465, 1402
Bst2UI	CCWGG	3 cut(s)	1430, 1469, 1592
Bst4CI	ACNGT	4 cut(s)	421, 571, 1048, 1810
Bst6I	CTCTTC	1 cut(s)	204
BstAPI	GCANNNNNTGC	3 cut(s)	92, 398, 1625
BstBAI	YACGTR	1 cut(s)	987
BstC8I	GCNNGC	5 cut(s)	55, 126, 147, 496, 1104
BstDEI	CTNAG	7 cut(s)	252, 264, 856, 1118, 1359, 1522, 1599
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	8 cut(s)	43, 463, 1032, 1151, 1166, 1477, 1572, 1692
BstFNI	CGCG	2 cut(s)	122, 124
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	3 cut(s)	31, 124, 164
BstKTI	GATC	4 cut(s)	302, 310, 1643, 1838
BstMAI	GTCTC	3 cut(s)	832, 1046, 1525
BstMBI	GATC	4 cut(s)	299, 307, 1640, 1835
BstMCI	CGRYCG	1 cut(s)	120
BstNI	CCWGG	3 cut(s)	1430, 1469, 1592
BstSCI	CCNGG	5 cut(s)	1184, 1185, 1428, 1467, 1590
BstSFI	CTRYAG	4 cut(s)	71, 129, 1554, 1662
BstSLI	GKGCMC	1 cut(s)	116
BstUI	CGCG	2 cut(s)	122, 124
BstX2I	RGATCY	2 cut(s)	1640, 1835
BstXI	CCANNNNNNTGG	3 cut(s)	472, 823, 1162
BstYI	RGATCY	2 cut(s)	1640, 1835
BstZI	CGGCCG	1 cut(s)	117
Bsu36I	CCTNAGG	1 cut(s)	1359
BsuRI	GGCC	5 cut(s)	119, 171, 353, 521, 1778
BtgI	CCRYGG	1 cut(s)	465
BtrI	CACGTC	1 cut(s)	810
BtsCI	GGATG	8 cut(s)	43, 463, 1032, 1151, 1166, 1477, 1572, 1692
BtsIMutI	CAGTG	6 cut(s)	470, 576, 646, 717, 1053, 1544
Cac8I	GCNNGC	5 cut(s)	55, 126, 147, 496, 1104
CaiI	CAGNNNCTG	1 cut(s)	92
CfoI	GCGC	3 cut(s)	31, 124, 164
Cfr10I	RCCGGY	1 cut(s)	1742
Cfr13I	GGNCC	3 cut(s)	170, 1142, 1777
Cfr9I	CCCGGG	1 cut(s)	1185
Csp6I	GTAC	5 cut(s)	813, 984, 1355, 1570, 1632
CspCI	CAANNNNNGTGG	4 cut(s)	514, 549, 1708, 1743
CviAII	CATG	9 cut(s)	66, 303, 438, 466, 823, 1031, 1270, 1645, 1817
CviQI	GTAC	5 cut(s)	813, 984, 1355, 1570, 1632
DdeI	CTNAG	7 cut(s)	252, 264, 856, 1118, 1359, 1522, 1599
DpnI	GATC	4 cut(s)	301, 309, 1642, 1837
DpnII	GATC	4 cut(s)	299, 307, 1640, 1835
DriI	GACNNNNNGTC	1 cut(s)	1292
EaeI	YGGCCR	1 cut(s)	117
EagI	CGGCCG	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	204
Eam1105I	GACNNNNNGTC	1 cut(s)	1292
EarI	CTCTTC	1 cut(s)	204
Ecl136II	GAGCTC	1 cut(s)	336
EclXI	CGGCCG	1 cut(s)	117
Eco130I	CCWWGG	2 cut(s)	465, 1402
Eco24I	GRGCYC	1 cut(s)	338
Eco31I	GGTCTC	1 cut(s)	832
Eco32I	GATATC	1 cut(s)	1041
Eco47I	GGWCC	1 cut(s)	1142
Eco52I	CGGCCG	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	336
Eco57I	CTGAAG	2 cut(s)	654, 1433
Eco81I	CCTNAGG	1 cut(s)	1359
Eco88I	CYCGRG	2 cut(s)	150, 1185
EcoICRI	GAGCTC	1 cut(s)	336
EcoRI	GAATTC	2 cut(s)	1407, 1443
EcoRII	CCWGG	3 cut(s)	1428, 1467, 1590
EcoRV	GATATC	1 cut(s)	1041
EcoT14I	CCWWGG	2 cut(s)	465, 1402
EcoT22I	ATGCAT	2 cut(s)	628, 1032
EcoT38I	GRGCYC	1 cut(s)	338
ErhI	CCWWGG	2 cut(s)	465, 1402
FaeI	CATG	9 cut(s)	69, 306, 441, 469, 826, 1034, 1273, 1648, 1820
FalI	AAGNNNNNCTT	4 cut(s)	1377, 1409, 1685, 1717
FaqI	GGGAC	6 cut(s)	241, 430, 1099, 1203, 1231, 1299
FatI	CATG	9 cut(s)	65, 302, 437, 465, 822, 1030, 1269, 1644, 1816
FauI	CCCGC	3 cut(s)	27, 117, 270
FauNDI	CATATG	1 cut(s)	628
FokI	GGATG	8 cut(s)	50, 470, 1039, 1138, 1153, 1484, 1579, 1699
FriOI	GRGCYC	1 cut(s)	338
FspBI	CTAG	4 cut(s)	146, 156, 845, 1649
FspI	TGCGCA	1 cut(s)	30
GlaI	GCGC	3 cut(s)	30, 123, 163
GsaI	CCCAGC	2 cut(s)	185, 1286
GsuI	CTGGAG	1 cut(s)	1451
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	5 cut(s)	119, 171, 353, 521, 1778
HapII	CCGG	3 cut(s)	1186, 1668, 1743
HhaI	GCGC	3 cut(s)	31, 124, 164
Hin1II	CATG	9 cut(s)	69, 306, 441, 469, 826, 1034, 1273, 1648, 1820
Hin6I	GCGC	3 cut(s)	29, 122, 162
HinP1I	GCGC	3 cut(s)	29, 122, 162
HincII	GTYRAC	2 cut(s)	285, 325
HindII	GTYRAC	2 cut(s)	285, 325
HinfI	GANTC	7 cut(s)	512, 692, 991, 1293, 1303, 1331, 1595
HpaII	CCGG	3 cut(s)	1186, 1668, 1743
HphI	GGTGA	4 cut(s)	1013, 1148, 1340, 1735
Hpy166II	GTNNAC	8 cut(s)	114, 285, 325, 567, 813, 990, 1259, 1699
Hpy188III	TCNNGA	7 cut(s)	297, 455, 797, 911, 1451, 1833, 1839
Hpy8I	GTNNAC	8 cut(s)	114, 285, 325, 567, 813, 990, 1259, 1699
HpyAV	CCTTC	5 cut(s)	130, 532, 600, 919, 1054
HpyCH4III	ACNGT	4 cut(s)	421, 571, 1048, 1810
HpyCH4IV	ACGT	2 cut(s)	809, 986
HpyF3I	CTNAG	7 cut(s)	252, 264, 856, 1118, 1359, 1522, 1599
HpySE526I	ACGT	2 cut(s)	809, 986
Hsp92II	CATG	9 cut(s)	69, 306, 441, 469, 826, 1034, 1273, 1648, 1820
HspAI	GCGC	3 cut(s)	29, 122, 162
Kzo9I	GATC	4 cut(s)	299, 307, 1640, 1835
LmnI	GCTCC	4 cut(s)	592, 1186, 1217, 1388
LweI	GCATC	4 cut(s)	28, 1017, 1175, 1462
MaeI	CTAG	4 cut(s)	146, 156, 845, 1649
MaeII	ACGT	2 cut(s)	809, 986
MaeIII	GTNAC	7 cut(s)	356, 615, 715, 772, 876, 1006, 1368
MalI	GATC	4 cut(s)	301, 309, 1642, 1837
MboI	GATC	4 cut(s)	299, 307, 1640, 1835
MboII	GAAGA	5 cut(s)	221, 521, 1390, 1439, 1696
MfeI	CAATTG	2 cut(s)	339, 675
MflI	RGATCY	2 cut(s)	1640, 1835
MhlI	GDGCHC	4 cut(s)	116, 338, 589, 1393
MlyI	GAGTC	3 cut(s)	985, 1302, 1589
Mph1103I	ATGCAT	2 cut(s)	628, 1032
MseI	TTAA	2 cut(s)	429, 708
MslI	CAYNNNNRTG	4 cut(s)	821, 1016, 1274, 1326
MspA1I	CMGCKG	5 cut(s)	34, 241, 407, 1102, 1612
MspI	CCGG	3 cut(s)	1186, 1668, 1743
MspR9I	CCNGG	5 cut(s)	1186, 1187, 1430, 1469, 1592
MunI	CAATTG	2 cut(s)	339, 675
Mva1269I	GAATGC	1 cut(s)	198
MvaI	CCWGG	3 cut(s)	1430, 1469, 1592
MvnI	CGCG	2 cut(s)	122, 124
NciI	CCSGG	2 cut(s)	1186, 1187
NcoI	CCATGG	1 cut(s)	465
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	4 cut(s)	299, 307, 1640, 1835
NheI	GCTAGC	1 cut(s)	145
NlaIII	CATG	9 cut(s)	69, 306, 441, 469, 826, 1034, 1273, 1648, 1820
NlaIV	GGNNCC	3 cut(s)	1182, 1642, 1837
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	3 cut(s)	715, 772, 1368
NsbI	TGCGCA	1 cut(s)	30
NsiI	ATGCAT	2 cut(s)	628, 1032
OliI	CACNNNNGTG	1 cut(s)	1326
PctI	GAATGC	1 cut(s)	198
PfeI	GAWTC	4 cut(s)	512, 692, 1303, 1331
PflMI	CCANNNNNTGG	1 cut(s)	296
PleI	GAGTC	3 cut(s)	985, 1301, 1589
PpsI	GAGTC	3 cut(s)	985, 1301, 1589
Ppu21I	YACGTR	1 cut(s)	987
Psp124BI	GAGCTC	1 cut(s)	338
Psp6I	CCWGG	3 cut(s)	1428, 1467, 1590
PspFI	CCCAGC	2 cut(s)	181, 1282
PspGI	CCWGG	3 cut(s)	1428, 1467, 1590
PspN4I	GGNNCC	3 cut(s)	1182, 1642, 1837
PspPI	GGNCC	3 cut(s)	170, 1142, 1777
PsrI	GAACNNNNNNTAC	2 cut(s)	1803, 1835
PstI	CTGCAG	4 cut(s)	75, 133, 1558, 1666
PstNI	CAGNNNCTG	1 cut(s)	92
PsuI	RGATCY	2 cut(s)	1640, 1835
PvuII	CAGCTG	3 cut(s)	241, 407, 1612
RsaI	GTAC	5 cut(s)	814, 985, 1356, 1571, 1633
RsaNI	GTAC	5 cut(s)	813, 984, 1355, 1570, 1632
RseI	CAYNNNNRTG	4 cut(s)	821, 1016, 1274, 1326
SacI	GAGCTC	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	429, 708
Sau3AI	GATC	4 cut(s)	299, 307, 1640, 1835
Sau96I	GGNCC	3 cut(s)	170, 1142, 1777
SchI	GAGTC	3 cut(s)	985, 1302, 1589
ScrFI	CCNGG	5 cut(s)	1186, 1187, 1430, 1469, 1592
SduI	GDGCHC	4 cut(s)	116, 338, 589, 1393
SfaNI	GCATC	4 cut(s)	28, 1017, 1175, 1462
SfcI	CTRYAG	4 cut(s)	71, 129, 1554, 1662
SinI	GGWCC	1 cut(s)	1142
SmaI	CCCGGG	1 cut(s)	1187
SmiMI	CAYNNNNRTG	4 cut(s)	821, 1016, 1274, 1326
SmlI	CTYRAG	1 cut(s)	1383
SmoI	CTYRAG	1 cut(s)	1383
SpeI	ACTAGT	1 cut(s)	844
SspI	AATATT	2 cut(s)	396, 1489
SspMI	CTAG	4 cut(s)	146, 156, 845, 1649
SstI	GAGCTC	1 cut(s)	338
StyD4I	CCNGG	5 cut(s)	1184, 1185, 1428, 1467, 1590
StyI	CCWWGG	2 cut(s)	465, 1402
TaaI	ACNGT	4 cut(s)	421, 571, 1048, 1810
TaiI	ACGT	2 cut(s)	812, 989
TaqI	TCGA	1 cut(s)	736
TauI	GCSGC	4 cut(s)	122, 404, 1439, 1778
TfiI	GAWTC	4 cut(s)	512, 692, 1303, 1331
Tru1I	TTAA	2 cut(s)	429, 708
Tru9I	TTAA	2 cut(s)	429, 708
TscAI	CASTG	6 cut(s)	477, 576, 646, 724, 1053, 1551
TseFI	GTSAC	3 cut(s)	715, 772, 1368
Tsp45I	GTSAC	3 cut(s)	715, 772, 1368
TspDTI	ATGAA	1 cut(s)	1073
TspGWI	ACGGA	1 cut(s)	1387
TspMI	CCCGGG	1 cut(s)	1185
TspRI	CASTG	6 cut(s)	477, 576, 646, 724, 1053, 1551
Van91I	CCANNNNNTGG	1 cut(s)	296
VneI	GTGCAC	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	1142
XapI	RAATTY	2 cut(s)	1407, 1443
XmaI	CCCGGG	1 cut(s)	1185
XspI	CTAG	4 cut(s)	146, 156, 845, 1649
Zsp2I	ATGCAT	2 cut(s)	628, 1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.