Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003147

Physical Location & Seq

Genomic Coordinates Forward (+)

11538327 .. 11538915

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g08760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCATCTGAACGGATGGCACCTCGGGGACAGCTTGTTTTCTCTGTAGGCATTGGAGCTTTGGTTTTTGTTCCAGTGTTCAAGCCCCTAACTGGTTTGCCTCCGTACATGGGTATGTTGCTGGGACTCGGAGTACTTTGGATTCTGACTGATGCTATTCATCACGGTGAATCGGAAAGACACAAGTTAAAAAGTCCCCTGGAGGCGTCAGGAATTCTTCGAGAATTAGCAAATTACCTGGATGCTCACATTCCCAATATTGAGCTGATTGCAATCTCAATAGGAGTTGTATCAGCAATTATAGACAACGTTCCACTGGTTGCCGCAACCATGGGGATGTACGATCTCACTACCTTTCCCCAGGATTCTGAGTTTTGGCAGCTGGTTGCATACTGTGCTAATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006820 GO:0006848 GO:0006950 GO:0006970 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0015075 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0015711 GO:0015718 GO:0015849 GO:0022804 GO:0022857 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050833 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CitMHS

Protein Analysis

136

Amino Acids

14.65

Weight (kDa)

5.16

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49810 AT3G19490
fragaria_vesca	FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320
malus_domestica	MD05G1088200.v1.1
prunus_persica	Prupe.8G134200_v2.0.a1 Prupe.8G134200_v2.0.a1 Prupe.8G134200_v2.0.a1 Prupe.8G134200_v2.0.a1
pyrus_communis	pycom05g08760 pycom10g08240
rosa_chinensis	RchiOBHm_Chr6g0255461 RchiOBHm_Chr6g0255491 RchiOBHm_Chr6g0255511 RchiOBHm_Chr6g0255521
rosa_laevigata	RLG00000014834 RLG00000014835
rosa_multiflora	Rmu_sc0002360.1_g000008
rosa_roxburghii	Rroxscaffold_7G00209940 Rroxscaffold_7G00209960
rosa_rugosa	Rorug05G0559000 Rorug05G0559100 Rorug05G0559100
rosa_samantha	Rh6AG076700 Rh6AG077100 Rh6AG077200 Rh6BG069500 Rh6BG069800 Rh6CG068500 Rh6DG065300
rosa_wichuraiana	Rw6G006660 Rw6G006680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AciI	CCGC	1 cut(s)	324
AclI	AACGTT	1 cut(s)	309
AcsI	RAATTY	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	3 cut(s)	107, 135, 341
AfiI	CCNNNNNNNGG	2 cut(s)	92, 110
AgsI	TTSAA	1 cut(s)	82
AjnI	CCWGG	3 cut(s)	198, 237, 360
AluBI	AGCT	4 cut(s)	34, 59, 265, 382
AluI	AGCT	4 cut(s)	34, 59, 265, 382
Ama87I	CYCGRG	1 cut(s)	24
ApeKI	GCWGC	1 cut(s)	379
ApoI	RAATTY	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	19
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	1 cut(s)	10
BciT130I	CCWGG	3 cut(s)	200, 239, 362
BfmI	CTRYAG	1 cut(s)	45
BisI	GCNGC	2 cut(s)	324, 380
BlsI	GCNGC	2 cut(s)	325, 381
BmcAI	AGTACT	1 cut(s)	135
Bme1390I	CCNGG	3 cut(s)	200, 239, 362
BmeT110I	CYCGRG	1 cut(s)	24
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	3 cut(s)	200, 239, 362
BmsI	GCATC	3 cut(s)	14, 142, 232
BpmI	CTGGAG	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	206
BsaJI	CCNNGG	4 cut(s)	23, 198, 330, 360
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 110
Bse1I	ACTGG	3 cut(s)	74, 97, 321
Bse8I	GATNNNNATC	1 cut(s)	272
BseBI	CCWGG	3 cut(s)	200, 239, 362
BseDI	CCNNGG	4 cut(s)	23, 198, 330, 360
BseGI	GGATG	3 cut(s)	21, 247, 342
BseJI	GATNNNNATC	1 cut(s)	272
BseLI	CCNNNNNNNGG	2 cut(s)	92, 110
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	3 cut(s)	74, 97, 321
BseXI	GCAGC	1 cut(s)	391
BseYI	CCCAGC	1 cut(s)	121
BshNI	GGYRCC	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	24
BslFI	GGGAC	3 cut(s)	42, 138, 180
BslI	CCNNNNNNNGG	2 cut(s)	92, 110
BsmFI	GGGAC	3 cut(s)	42, 138, 180
BsoBI	CYCGRG	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	343
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	19
BsrI	ACTGG	3 cut(s)	74, 97, 321
BssECI	CCNNGG	4 cut(s)	23, 198, 330, 360
BssMI	GATC	1 cut(s)	343
BssNI	GRCGYC	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	3 cut(s)	200, 239, 362
Bst4CI	ACNGT	2 cut(s)	167, 395
BstACI	GRCGYC	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstDEI	CTNAG	1 cut(s)	369
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	3 cut(s)	21, 247, 342
BstKTI	GATC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNI	CCWGG	3 cut(s)	200, 239, 362
BstSCI	CCNGG	3 cut(s)	198, 237, 360
BstSFI	CTRYAG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	391
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	3 cut(s)	21, 247, 342
BtsIMutI	CAGTG	2 cut(s)	81, 314
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	3 cut(s)	106, 134, 340
CviAII	CATG	2 cut(s)	109, 331
CviJI	RGCY	5 cut(s)	34, 59, 85, 265, 382
CviKI_1	RGCY	5 cut(s)	34, 59, 85, 265, 382
CviQI	GTAC	3 cut(s)	106, 134, 340
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
Eco130I	CCWWGG	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	213
EcoRII	CCWGG	3 cut(s)	198, 237, 360
EcoT14I	CCWWGG	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	2 cut(s)	112, 334
FaiI	YATR	5 cut(s)	110, 116, 302, 332, 391
FaqI	GGGAC	3 cut(s)	42, 138, 180
FatI	CATG	2 cut(s)	108, 330
Fnu4HI	GCNGC	2 cut(s)	324, 380
FokI	GGATG	3 cut(s)	28, 254, 349
Fsp4HI	GCNGC	2 cut(s)	324, 380
GluI	GCNGC	2 cut(s)	324, 380
GsaI	CCCAGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	221
HgaI	GACGC	1 cut(s)	195
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	2 cut(s)	112, 334
HinfI	GANTC	4 cut(s)	126, 142, 170, 365
HphI	GGTGA	1 cut(s)	179
Hpy188I	TCNGA	5 cut(s)	10, 131, 147, 175, 370
Hpy188III	TCNNGA	2 cut(s)	210, 221
HpyCH4III	ACNGT	2 cut(s)	167, 395
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	2 cut(s)	272, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	1 cut(s)	309
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	2 cut(s)	112, 334
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	3 cut(s)	14, 142, 232
MaeII	ACGT	1 cut(s)	309
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	1 cut(s)	209
MluCI	AATT	4 cut(s)	213, 224, 232, 297
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	3 cut(s)	33, 111, 196
MseI	TTAA	1 cut(s)	188
MslI	CAYNNNNRTG	3 cut(s)	113, 165, 335
MspA1I	CMGCKG	1 cut(s)	382
MspR9I	CCNGG	3 cut(s)	200, 239, 362
MvaI	CCWGG	3 cut(s)	200, 239, 362
MwoI	GCNNNNNNNGC	1 cut(s)	395
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	2 cut(s)	112, 334
NlaIV	GGNNCC	1 cut(s)	21
PfeI	GAWTC	3 cut(s)	142, 170, 365
PkrI	GCNGC	2 cut(s)	325, 381
PleI	GAGTC	1 cut(s)	120
PpsI	GAGTC	1 cut(s)	120
Psp1406I	AACGTT	1 cut(s)	309
Psp6I	CCWGG	3 cut(s)	198, 237, 360
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	3 cut(s)	198, 237, 360
PspN4I	GGNNCC	1 cut(s)	21
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	3 cut(s)	107, 135, 341
RsaNI	GTAC	3 cut(s)	106, 134, 340
RseI	CAYNNNNRTG	3 cut(s)	113, 165, 335
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	2 cut(s)	324, 380
Sau3AI	GATC	1 cut(s)	343
ScaI	AGTACT	1 cut(s)	135
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	3 cut(s)	200, 239, 362
SetI	ASST	9 cut(s)	25, 36, 61, 240, 267, 312, 356, 384, 407
SfaNI	GCATC	3 cut(s)	14, 142, 232
SfcI	CTRYAG	1 cut(s)	45
SmiMI	CAYNNNNRTG	3 cut(s)	113, 165, 335
Sse9I	AATT	4 cut(s)	213, 224, 232, 297
SsiI	CCGC	1 cut(s)	324
SspI	AATATT	1 cut(s)	259
StyD4I	CCNGG	3 cut(s)	198, 237, 360
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	2 cut(s)	167, 395
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	220
TasI	AATT	4 cut(s)	213, 224, 232, 297
TatI	WGTACW	1 cut(s)	133
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	3 cut(s)	142, 170, 365
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TscAI	CASTG	2 cut(s)	81, 321
TseI	GCWGC	1 cut(s)	379
TspDTI	ATGAA	1 cut(s)	149
TspGWI	ACGGA	2 cut(s)	28, 93
TspRI	CASTG	2 cut(s)	81, 321
XapI	RAATTY	1 cut(s)	213
ZrmI	AGTACT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.