Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003147

Physical Location & Seq

Genomic Coordinates Reverse (-)

11094855 .. 11098115

Gene Structure 3261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG076700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCATCCCAACAGATGGCTCCCCGGGGACAGCTTGTTTTGTCAGTAGGCATCGGAGCTTTGATTTTTGTTCCGGTTTTCAAGTCCCTAACTGGTTTGCCTCCTTACATGGGTATGCTGCTGGGGCTTGGAGTCATTTGGATTCTGACTGATGCAATCCATCATGGTGAATCGGAAAGACAAAGGTTGAAAGTACCTCAGGCTTTGTCACGGATTGACACTCAAGGAGCAGTTTTCTTCCTTGGAATTCTTTTATCTGTTAGCAGAGAGGCTGAGATTTGTGGAAATGAACACCGCGAAGAGGTCCGTCCCATAGCTGGATCACACCATTGTGCAGACTCACGAGGATCCACGACATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006820 GO:0006848 GO:0006950 GO:0006970 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0015075 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0015711 GO:0015718 GO:0015849 GO:0022804 GO:0022857 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050833 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CitMHS

Protein Analysis

120

Amino Acids

12.93

Weight (kDa)

6.96

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49810 AT3G19490
fragaria_vesca	FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320
malus_domestica	MD05G1088200.v1.1
prunus_persica	Prupe.8G134200_v2.0.a1 Prupe.8G134200_v2.0.a1 Prupe.8G134200_v2.0.a1 Prupe.8G134200_v2.0.a1
pyrus_communis	pycom05g08760 pycom10g08240
rosa_chinensis	RchiOBHm_Chr6g0255461 RchiOBHm_Chr6g0255491 RchiOBHm_Chr6g0255511 RchiOBHm_Chr6g0255521
rosa_laevigata	RLG00000014834 RLG00000014835
rosa_multiflora	Rmu_sc0002360.1_g000008
rosa_roxburghii	Rroxscaffold_7G00209940 Rroxscaffold_7G00209960
rosa_rugosa	Rorug05G0559000 Rorug05G0559100 Rorug05G0559100
rosa_samantha	Rh6AG076700 Rh6AG077100 Rh6AG077200 Rh6BG069500 Rh6BG069800 Rh6CG068500 Rh6DG065300
rosa_wichuraiana	Rw6G006660 Rw6G006680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccII	CGCG	1 cut(s)	297
AciI	CCGC	1 cut(s)	295
AclWI	GGATC	3 cut(s)	328, 342, 355
AcsI	RAATTY	1 cut(s)	246
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	4 cut(s)	16, 110, 301, 317
AgsI	TTSAA	2 cut(s)	82, 190
AleI	CACNNNNGTG	1 cut(s)	330
AluBI	AGCT	3 cut(s)	34, 59, 317
AluI	AGCT	3 cut(s)	34, 59, 317
AlwI	GGATC	3 cut(s)	328, 342, 355
Ama87I	CYCGRG	1 cut(s)	24
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	2 cut(s)	25, 26
AsuHPI	GGTGA	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	304
AxyI	CCTNAGG	1 cut(s)	198
BamHI	GGATCC	1 cut(s)	347
BauI	CACGAG	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	105
BccI	CCATC	2 cut(s)	10, 168
BcnI	CCSGG	2 cut(s)	25, 26
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
Bme1390I	CCNGG	2 cut(s)	25, 26
Bme18I	GGWCC	1 cut(s)	304
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	2 cut(s)	21, 349
BmrFI	CCNGG	2 cut(s)	25, 26
BmsI	GCATC	3 cut(s)	14, 60, 142
BpuEI	CTTGAG	1 cut(s)	207
BpuMI	CCSGG	2 cut(s)	25, 26
BsaJI	CCNNGG	4 cut(s)	23, 24, 25, 241
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 110, 301, 317
Bse1I	ACTGG	1 cut(s)	97
Bse21I	CCTNAGG	1 cut(s)	198
BseDI	CCNNGG	4 cut(s)	23, 24, 25, 241
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	4 cut(s)	16, 110, 301, 317
BseMII	CTCAG	2 cut(s)	212, 264
BseNI	ACTGG	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	105
BseYI	CCCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	354
Bsh1236I	CGCG	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	2 cut(s)	25, 74
BslFI	GGGAC	3 cut(s)	42, 70, 294
BslI	CCNNNNNNNGG	4 cut(s)	16, 110, 301, 317
BsmFI	GGGAC	3 cut(s)	42, 70, 294
BsoBI	CYCGRG	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	320, 347
BspACI	CCGC	1 cut(s)	295
BspCNI	CTCAG	2 cut(s)	211, 265
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	21, 349
BspPI	GGATC	3 cut(s)	328, 342, 355
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	4 cut(s)	23, 24, 25, 241
BssMI	GATC	2 cut(s)	320, 347
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	241
Bst2BI	CACGAG	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	294
BstDEI	CTNAG	3 cut(s)	198, 273, 360
BstF5I	GGATG	1 cut(s)	5
BstFNI	CGCG	1 cut(s)	297
BstKTI	GATC	2 cut(s)	323, 350
BstMBI	GATC	2 cut(s)	320, 347
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstSCI	CCNGG	2 cut(s)	23, 24
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
Bsu36I	CCTNAGG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	304
Cfr9I	CCCGGG	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	2 cut(s)	109, 164
CviJI	RGCY	7 cut(s)	20, 34, 59, 127, 203, 272, 317
CviKI_1	RGCY	7 cut(s)	20, 34, 59, 127, 203, 272, 317
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	3 cut(s)	198, 273, 360
DpnI	GATC	2 cut(s)	322, 349
DpnII	GATC	2 cut(s)	320, 347
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	304
Eco81I	CCTNAGG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	2 cut(s)	112, 167
FaiI	YATR	4 cut(s)	110, 116, 165, 314
FaqI	GGGAC	3 cut(s)	42, 70, 294
FatI	CATG	2 cut(s)	108, 163
Fnu4HI	GCNGC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	119
GluI	GCNGC	1 cut(s)	119
GsaI	CCCAGC	1 cut(s)	125
HapII	CCGG	2 cut(s)	25, 74
Hin1II	CATG	2 cut(s)	112, 167
HinfI	GANTC	4 cut(s)	132, 142, 170, 338
HpaII	CCGG	2 cut(s)	25, 74
HphI	GGTGA	1 cut(s)	179
Hpy188I	TCNGA	3 cut(s)	56, 147, 175
Hpy188III	TCNNGA	1 cut(s)	342
HpyCH4V	TGCA	2 cut(s)	155, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	3 cut(s)	198, 273, 360
Hsp92II	CATG	2 cut(s)	112, 167
Kzo9I	GATC	2 cut(s)	320, 347
LmnI	GCTCC	3 cut(s)	25, 56, 227
LpnPI	CCDG	6 cut(s)	38, 78, 87, 107, 185, 303
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	3 cut(s)	14, 60, 142
MaeIII	GTNAC	1 cut(s)	207
MalI	GATC	2 cut(s)	322, 349
MboI	GATC	2 cut(s)	320, 347
MboII	GAAGA	2 cut(s)	229, 311
MflI	RGATCY	1 cut(s)	347
MluCI	AATT	1 cut(s)	246
MlyI	GAGTC	2 cut(s)	141, 332
MnlI	CCTC	5 cut(s)	111, 207, 262, 295, 338
MslI	CAYNNNNRTG	3 cut(s)	113, 165, 330
MspI	CCGG	2 cut(s)	25, 74
MspR9I	CCNGG	2 cut(s)	25, 26
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	124
NciI	CCSGG	2 cut(s)	25, 26
NdeII	GATC	2 cut(s)	320, 347
NlaIII	CATG	2 cut(s)	112, 167
NlaIV	GGNNCC	2 cut(s)	21, 349
NmuCI	GTSAC	1 cut(s)	207
OliI	CACNNNNGTG	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	142, 170
PflMI	CCANNNNNTGG	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	120
PleI	GAGTC	2 cut(s)	140, 332
PpsI	GAGTC	2 cut(s)	140, 332
PspFI	CCCAGC	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	21, 349
PspPI	GGNCC	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	347
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
RseI	CAYNNNNRTG	3 cut(s)	113, 165, 330
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	2 cut(s)	320, 347
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	2 cut(s)	141, 332
ScrFI	CCNGG	2 cut(s)	25, 26
SetI	ASST	6 cut(s)	36, 61, 188, 199, 306, 319
SfaNI	GCATC	3 cut(s)	14, 60, 142
SinI	GGWCC	1 cut(s)	304
SmaI	CCCGGG	1 cut(s)	26
SmiMI	CAYNNNNRTG	3 cut(s)	113, 165, 330
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	1 cut(s)	246
SsiI	CCGC	1 cut(s)	295
StyD4I	CCNGG	2 cut(s)	23, 24
StyI	CCWWGG	1 cut(s)	241
TasI	AATT	1 cut(s)	246
TfiI	GAWTC	2 cut(s)	142, 170
TseFI	GTSAC	1 cut(s)	207
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	207
TspDTI	ATGAA	1 cut(s)	303
TspGWI	ACGGA	2 cut(s)	226, 296
TspMI	CCCGGG	1 cut(s)	24
Van91I	CCANNNNNTGG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	304
XapI	RAATTY	1 cut(s)	246
XmaI	CCCGGG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.