Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003147

Physical Location & Seq

Genomic Coordinates Reverse (-)

10774318 .. 10778248

Gene Structure 3931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22912

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGGTTCCTGGATTTTAGGAGGAGTTGTTGTCATAGCTGCAAATGCTGGTGGTACGTGGACTCCTATTGGTGATGTTACAACCACTATGTTATGGATTCATGGTCAGATATCAACAGTGGAGACAATGAAGGGATTATTTATACCAGCAGTCGTTTCTGTTGCTGTTCCACTGGCACTTTTGTCCCTTACAAGTGAAGCAAGTGGTGATGGACCAGACACATCCAATGTCATGGCATCCGAACAGATGGCTCCCCGTGGACAGCTTGTTTTGTCGGTAGGCATCGGAGCTTTGATTTTTGTTCCGGTTTTCAAGTCCCTAACTGGTTTGCCTCCTTACATGGGTATGCTGCTGGGGCTTGGAGTCCTTTGGATTCTGACTGATGCAATCCACCATGGTGAATCAGAAAGACAAAGGTTGAAGGTACCTCAGGCTTTGTCACGGATTGATACTCAAGGAGCAGTTTTCTTCCTTGGAATTCTTTTATCTGTTAGCAGCCTGGAGGCGGCAGGAATTCTTCGGGAACTAGCAAACTACCTGGACACTCATATTCCCAATATTGAACTAATTGCATGTTCAATAGGAATTGTCTCAGCAATTATAGACAATGTTCCACTGGTTGCTGCAGCTATGGGGATGCTGGTTGCATATTGTGCTGGTACTGGTGGTTCCATGCTAGTTATTGGTTCTTCAGCCGGAGTTGCTTTTATGGGGATGGAAAAGGTGGACTTCTTCTGGTACTTTCGCAAGGTAAGTGGGTATGCTTTTGCCGGTTATGCTGCTGGTATTGCAGCCTATTTAGCAGCTCAAAACCTCCACAGCTCAGGTTCCTTTTCTTTCTGGATCCTGAATTATGACATAAAGAAGCCAACTTGGATCCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006820 GO:0006848 GO:0006950 GO:0006970 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0015075 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0015711 GO:0015718 GO:0015849 GO:0022804 GO:0022857 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050833 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CitMHS

Protein Analysis

294

Amino Acids

30.91

Weight (kDa)

5.45

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CitMHS	PF03600	9 - 221	6.3e-13	Citrate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49810 AT3G19490
fragaria_vesca	FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320
malus_domestica	MD05G1088200.v1.1
prunus_persica	Prupe.8G134200_v2.0.a1 Prupe.8G134200_v2.0.a1 Prupe.8G134200_v2.0.a1 Prupe.8G134200_v2.0.a1
pyrus_communis	pycom05g08760 pycom10g08240
rosa_chinensis	RchiOBHm_Chr6g0255461 RchiOBHm_Chr6g0255491 RchiOBHm_Chr6g0255511 RchiOBHm_Chr6g0255521
rosa_laevigata	RLG00000014834 RLG00000014835
rosa_multiflora	Rmu_sc0002360.1_g000008
rosa_roxburghii	Rroxscaffold_7G00209940 Rroxscaffold_7G00209960
rosa_rugosa	Rorug05G0559000 Rorug05G0559100 Rorug05G0559100
rosa_samantha	Rh6AG076700 Rh6AG077100 Rh6AG077200 Rh6BG069500 Rh6BG069800 Rh6CG068500 Rh6DG065300
rosa_wichuraiana	Rw6G006660 Rw6G006680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	424
AccB1I	GGYRCC	1 cut(s)	424
AciI	CCGC	1 cut(s)	506
AclWI	GGATC	4 cut(s)	838, 851, 871, 884
AcsI	RAATTY	2 cut(s)	477, 513
AcuI	CTGAAG	1 cut(s)	675
AfaI	GTAC	4 cut(s)	55, 426, 661, 740
AfiI	CCNNNNNNNGG	2 cut(s)	341, 505
AgsI	TTSAA	4 cut(s)	313, 421, 563, 579
AjnI	CCWGG	3 cut(s)	8, 498, 537
AleI	CACNNNNGTG	1 cut(s)	396
AluBI	AGCT	6 cut(s)	38, 265, 290, 629, 806, 822
AluI	AGCT	6 cut(s)	38, 265, 290, 629, 806, 822
Alw26I	GTCTC	2 cut(s)	116, 595
AlwI	GGATC	4 cut(s)	838, 851, 871, 884
ApeKI	GCWGC	8 cut(s)	38, 349, 495, 623, 626, 779, 791, 803
ApoI	RAATTY	2 cut(s)	477, 513
Asp718I	GGTACC	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	212
AsuHPI	GGTGA	3 cut(s)	83, 218, 410
AvaII	GGWCC	1 cut(s)	212
AxyI	CCTNAGG	1 cut(s)	429
BamHI	GGATCC	2 cut(s)	843, 876
BanI	GGYRCC	1 cut(s)	424
BbvI	GCAGC	8 cut(s)	25, 336, 507, 610, 638, 766, 803, 815
BccI	CCATC	3 cut(s)	203, 241, 709
BciT130I	CCWGG	3 cut(s)	10, 500, 539
BcoDI	GTCTC	2 cut(s)	116, 595
BfaI	CTAG	2 cut(s)	527, 677
BfmI	CTRYAG	1 cut(s)	624
BisI	GCNGC	9 cut(s)	39, 350, 496, 507, 624, 627, 780, 792, 804
BlsI	GCNGC	9 cut(s)	40, 351, 497, 508, 625, 628, 781, 793, 805
Bme1390I	CCNGG	3 cut(s)	10, 500, 539
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	7 cut(s)	7, 252, 426, 670, 829, 845, 878
BmrFI	CCNGG	3 cut(s)	10, 500, 539
BmsI	GCATC	4 cut(s)	245, 291, 373, 627
BpmI	CTGGAG	1 cut(s)	521
Bpu10I	CCTNAGC	1 cut(s)	823
BpuEI	CTTGAG	1 cut(s)	438
BsaAI	YACGTR	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	256, 394, 472
BsaWI	WCCGGW	1 cut(s)	304
BsaXI	ACNNNNNCTCC	6 cut(s)	12, 15, 42, 45, 46, 76
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 505
Bse118I	RCCGGY	1 cut(s)	770
Bse1I	ACTGG	4 cut(s)	177, 328, 621, 667
Bse21I	CCTNAGG	1 cut(s)	429
BseBI	CCWGG	3 cut(s)	10, 500, 539
BseDI	CCNNGG	3 cut(s)	256, 394, 472
BseGI	GGATG	4 cut(s)	221, 236, 642, 720
BseLI	CCNNNNNNNGG	2 cut(s)	341, 505
BseMII	CTCAG	3 cut(s)	443, 606, 837
BseNI	ACTGG	4 cut(s)	177, 328, 621, 667
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	8 cut(s)	25, 336, 507, 610, 638, 766, 803, 815
BseYI	CCCAGC	1 cut(s)	352
BshNI	GGYRCC	1 cut(s)	424
BsiSI	CCGG	3 cut(s)	305, 696, 771
BslFI	GGGAC	2 cut(s)	169, 301
BslI	CCNNNNNNNGG	2 cut(s)	341, 505
BsmAI	GTCTC	2 cut(s)	116, 595
BsmFI	GGGAC	2 cut(s)	169, 301
Bsp143I	GATC	2 cut(s)	843, 876
Bsp19I	CCATGG	1 cut(s)	394
BspACI	CCGC	1 cut(s)	506
BspCNI	CTCAG	3 cut(s)	442, 605, 836
BspLI	GGNNCC	7 cut(s)	7, 252, 426, 670, 829, 845, 878
BspMAI	CTGCAG	1 cut(s)	628
BspPI	GGATC	4 cut(s)	838, 851, 871, 884
BspT107I	GGYRCC	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	770
BsrI	ACTGG	4 cut(s)	177, 328, 621, 667
BssAI	RCCGGY	1 cut(s)	770
BssECI	CCNNGG	3 cut(s)	256, 394, 472
BssMI	GATC	2 cut(s)	843, 876
BssT1I	CCWWGG	2 cut(s)	394, 472
Bst2UI	CCWGG	3 cut(s)	10, 500, 539
Bst4CI	ACNGT	1 cut(s)	118
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstBAI	YACGTR	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	429, 592, 823
BstDSI	CCRYGG	2 cut(s)	256, 394
BstF5I	GGATG	4 cut(s)	221, 236, 642, 720
BstKTI	GATC	2 cut(s)	846, 879
BstMAI	GTCTC	2 cut(s)	116, 595
BstMBI	GATC	2 cut(s)	843, 876
BstMWI	GCNNNNNNNGC	7 cut(s)	44, 355, 653, 701, 776, 788, 800
BstNI	CCWGG	3 cut(s)	10, 500, 539
BstNSI	RCATGY	1 cut(s)	576
BstSCI	CCNGG	3 cut(s)	8, 498, 537
BstSFI	CTRYAG	1 cut(s)	624
BstV1I	GCAGC	8 cut(s)	25, 336, 507, 610, 638, 766, 803, 815
BstX2I	RGATCY	2 cut(s)	843, 876
BstXI	CCANNNNNNTGG	1 cut(s)	232
BstYI	RGATCY	2 cut(s)	843, 876
Bsu36I	CCTNAGG	1 cut(s)	429
BtgI	CCRYGG	2 cut(s)	256, 394
BtsCI	GGATG	4 cut(s)	221, 236, 642, 720
BtsIMutI	CAGTG	3 cut(s)	123, 170, 614
Cfr10I	RCCGGY	1 cut(s)	770
Cfr13I	GGNCC	1 cut(s)	212
Csp6I	GTAC	4 cut(s)	54, 425, 660, 739
CspCI	CAANNNNNGTGG	2 cut(s)	736, 771
CviAII	CATG	6 cut(s)	101, 232, 340, 395, 573, 673
CviQI	GTAC	4 cut(s)	54, 425, 660, 739
DdeI	CTNAG	3 cut(s)	429, 592, 823
DpnI	GATC	2 cut(s)	845, 878
DpnII	GATC	2 cut(s)	843, 876
Eco130I	CCWWGG	2 cut(s)	394, 472
Eco32I	GATATC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	675
Eco81I	CCTNAGG	1 cut(s)	429
EcoRI	GAATTC	2 cut(s)	477, 513
EcoRII	CCWGG	3 cut(s)	8, 498, 537
EcoRV	GATATC	1 cut(s)	111
EcoT14I	CCWWGG	2 cut(s)	394, 472
ErhI	CCWWGG	2 cut(s)	394, 472
FaeI	CATG	6 cut(s)	104, 235, 343, 398, 576, 676
FalI	AAGNNNNNCTT	2 cut(s)	713, 745
FaqI	GGGAC	2 cut(s)	169, 301
FatI	CATG	6 cut(s)	100, 231, 339, 394, 572, 672
Fnu4HI	GCNGC	9 cut(s)	39, 350, 496, 507, 624, 627, 780, 792, 804
FokI	GGATG	4 cut(s)	208, 223, 649, 727
Fsp4HI	GCNGC	9 cut(s)	39, 350, 496, 507, 624, 627, 780, 792, 804
FspBI	CTAG	2 cut(s)	527, 677
GluI	GCNGC	9 cut(s)	39, 350, 496, 507, 624, 627, 780, 792, 804
GsaI	CCCAGC	1 cut(s)	356
GsuI	CTGGAG	1 cut(s)	521
HapII	CCGG	3 cut(s)	305, 696, 771
Hin1II	CATG	6 cut(s)	104, 235, 343, 398, 576, 676
HinfI	GANTC	5 cut(s)	61, 97, 363, 373, 401
HpaII	CCGG	3 cut(s)	305, 696, 771
HphI	GGTGA	3 cut(s)	83, 218, 410
Hpy166II	GTNNAC	3 cut(s)	60, 260, 727
Hpy188I	TCNGA	5 cut(s)	108, 241, 287, 378, 406
Hpy188III	TCNNGA	3 cut(s)	521, 841, 847
Hpy8I	GTNNAC	3 cut(s)	60, 260, 727
HpyAV	CCTTC	2 cut(s)	124, 415
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	6 cut(s)	41, 386, 572, 626, 647, 791
HpyF10VI	GCNNNNNNNGC	7 cut(s)	44, 355, 653, 701, 776, 788, 800
HpyF3I	CTNAG	3 cut(s)	429, 592, 823
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	6 cut(s)	104, 235, 343, 398, 576, 676
KpnI	GGTACC	1 cut(s)	428
Kzo9I	GATC	2 cut(s)	843, 876
LmnI	GCTCC	3 cut(s)	256, 287, 458
Lsp1109I	GCAGC	8 cut(s)	25, 336, 507, 610, 638, 766, 803, 815
LweI	GCATC	4 cut(s)	245, 291, 373, 627
MaeI	CTAG	2 cut(s)	527, 677
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	76, 438
MalI	GATC	2 cut(s)	845, 878
MboI	GATC	2 cut(s)	843, 876
MboII	GAAGA	4 cut(s)	460, 509, 681, 724
MflI	RGATCY	2 cut(s)	843, 876
MluCI	AATT	6 cut(s)	477, 513, 567, 585, 597, 850
MlyI	GAGTC	2 cut(s)	55, 372
MnlI	CCTC	5 cut(s)	14, 342, 438, 496, 824
MslI	CAYNNNNRTG	2 cut(s)	344, 396
MspI	CCGG	3 cut(s)	305, 696, 771
MspR9I	CCNGG	3 cut(s)	10, 500, 539
MvaI	CCWGG	3 cut(s)	10, 500, 539
MwoI	GCNNNNNNNGC	7 cut(s)	44, 355, 653, 701, 776, 788, 800
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	2 cut(s)	843, 876
NlaIII	CATG	6 cut(s)	104, 235, 343, 398, 576, 676
NlaIV	GGNNCC	7 cut(s)	7, 252, 426, 670, 829, 845, 878
NmuCI	GTSAC	1 cut(s)	438
NspI	RCATGY	1 cut(s)	576
OliI	CACNNNNGTG	1 cut(s)	396
PfeI	GAWTC	3 cut(s)	97, 373, 401
PfoI	TCCNGGA	1 cut(s)	8
PkrI	GCNGC	9 cut(s)	40, 351, 497, 508, 625, 628, 781, 793, 805
PleI	GAGTC	2 cut(s)	55, 371
PpsI	GAGTC	2 cut(s)	55, 371
Ppu21I	YACGTR	1 cut(s)	57
Psp6I	CCWGG	3 cut(s)	8, 498, 537
PspFI	CCCAGC	1 cut(s)	352
PspGI	CCWGG	3 cut(s)	8, 498, 537
PspN4I	GGNNCC	7 cut(s)	7, 252, 426, 670, 829, 845, 878
PspPI	GGNCC	1 cut(s)	212
PsrI	GAACNNNNNNTAC	2 cut(s)	652, 684
PstI	CTGCAG	1 cut(s)	628
PsuI	RGATCY	2 cut(s)	843, 876
RsaI	GTAC	4 cut(s)	55, 426, 661, 740
RsaNI	GTAC	4 cut(s)	54, 425, 660, 739
RseI	CAYNNNNRTG	2 cut(s)	344, 396
SatI	GCNGC	9 cut(s)	39, 350, 496, 507, 624, 627, 780, 792, 804
Sau3AI	GATC	2 cut(s)	843, 876
Sau96I	GGNCC	1 cut(s)	212
SchI	GAGTC	2 cut(s)	55, 372
ScrFI	CCNGG	3 cut(s)	10, 500, 539
SfaNI	GCATC	4 cut(s)	245, 291, 373, 627
SfcI	CTRYAG	1 cut(s)	624
SinI	GGWCC	1 cut(s)	212
SmiMI	CAYNNNNRTG	2 cut(s)	344, 396
SmlI	CTYRAG	1 cut(s)	453
SmoI	CTYRAG	1 cut(s)	453
Sse9I	AATT	6 cut(s)	477, 513, 567, 585, 597, 850
SsiI	CCGC	1 cut(s)	506
SspI	AATATT	1 cut(s)	559
SspMI	CTAG	2 cut(s)	527, 677
StyD4I	CCNGG	3 cut(s)	8, 498, 537
StyI	CCWWGG	2 cut(s)	394, 472
TaaI	ACNGT	1 cut(s)	118
TaiI	ACGT	1 cut(s)	59
TasI	AATT	6 cut(s)	477, 513, 567, 585, 597, 850
TauI	GCSGC	1 cut(s)	509
TfiI	GAWTC	3 cut(s)	97, 373, 401
TscAI	CASTG	3 cut(s)	123, 177, 621
TseFI	GTSAC	1 cut(s)	438
TseI	GCWGC	8 cut(s)	38, 349, 495, 623, 626, 779, 791, 803
Tsp45I	GTSAC	1 cut(s)	438
TspDTI	ATGAA	2 cut(s)	89, 143
TspGWI	ACGGA	1 cut(s)	457
TspRI	CASTG	3 cut(s)	123, 177, 621
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	2 cut(s)	477, 513
XceI	RCATGY	1 cut(s)	576
XspI	CTAG	2 cut(s)	527, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.