Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003147

Physical Location & Seq

Genomic Coordinates Reverse (-)

74854126 .. 74855622

Gene Structure 1497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0559000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCAACGGCTATTCGATCTATGCTTGGAAATTTTGGGACTAGAAGATCCGTAGCAAACATGGTCATGCCTTTCGAAATCAGAACCCTAAATTTTAATCATGATCAGGAGGTGTTTCCAGTTTCGATGCCTCATCTAAATTTGGGCTATTCCTCTCGTCACCCTCTTCATTTTCTTTCTGCGTTACACCGTCCGTGCATTCAAAGGCGGCCTAAGAAAGTGGAACCTGACCACCAAGACATTCCAGAAATGTTATTTCTCGGAGCAAGTCCTATTGCTGCCTCATCCAGATATTGCATTAGAGTTGTGATTTATGCACATTTCGCTTTGGAAGAGTTCAACAAGCACAAGAATTCCCAACTGCAATTTGTAAGAGTGGTAAAGGCATATAACCAGGTGTTTGGTGGTTGGACGGTTCGTTTGCTAACCTTGGAGGCAATTGATCCTGAGAATGTGATCCAGATTTACCAAGCAATAGTTAAGGAGCATTGCACTGGCAACCCTCCAGTGCAGCTCGAATTGTTTGGTCTTGTTGCTGATAATGGCAATGGGAGTTTGTTGAAACTTATTGACAACAGGCGTTCAGGCCGAGGAGGACCAGTTGATAATCGGCGTACTAGCCTTCCTGCACGCGCTCACGCGCGTGCGGAAGTGCGGTGCTCGGGTGTGCAATTAATCTTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006820 GO:0006848 GO:0006950 GO:0006970 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0015075 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0015711 GO:0015718 GO:0015849 GO:0022804 GO:0022857 GO:0030001 GO:0031967 GO:0031975 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050833 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CitMHS

Protein Analysis

228

Amino Acids

25.72

Weight (kDa)

9.77

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	102 - 164	6.9e-10	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49810 AT3G19490
fragaria_vesca	FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320 FvH4_2g05320
malus_domestica	MD05G1088200.v1.1
prunus_persica	Prupe.8G134200_v2.0.a1 Prupe.8G134200_v2.0.a1 Prupe.8G134200_v2.0.a1 Prupe.8G134200_v2.0.a1
pyrus_communis	pycom05g08760 pycom10g08240
rosa_chinensis	RchiOBHm_Chr6g0255461 RchiOBHm_Chr6g0255491 RchiOBHm_Chr6g0255511 RchiOBHm_Chr6g0255521
rosa_laevigata	RLG00000014834 RLG00000014835
rosa_multiflora	Rmu_sc0002360.1_g000008
rosa_roxburghii	Rroxscaffold_7G00209940 Rroxscaffold_7G00209960
rosa_rugosa	Rorug05G0559000 Rorug05G0559100 Rorug05G0559100
rosa_samantha	Rh6AG076700 Rh6AG077100 Rh6AG077200 Rh6BG069500 Rh6BG069800 Rh6CG068500 Rh6DG065300
rosa_wichuraiana	Rw6G006660 Rw6G006680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	633, 641, 643
AciI	CCGC	3 cut(s)	208, 647, 655
AclWI	GGATC	3 cut(s)	42, 437, 451
AcsI	RAATTY	4 cut(s)	31, 91, 139, 352
AfaI	GTAC	1 cut(s)	616
AgsI	TTSAA	3 cut(s)	203, 340, 562
AjnI	CCWGG	1 cut(s)	393
AleI	CACNNNNGTG	1 cut(s)	642
AluBI	AGCT	1 cut(s)	514
AluI	AGCT	1 cut(s)	514
Alw21I	GWGCWC	1 cut(s)	662
AlwI	GGATC	3 cut(s)	42, 437, 451
Ama87I	CYCGRG	1 cut(s)	661
AoxI	GGCC	2 cut(s)	209, 586
ApeKI	GCWGC	2 cut(s)	278, 511
ApoI	RAATTY	4 cut(s)	31, 91, 139, 352
ArsI	GACNNNNNNTTYG	2 cut(s)	403, 435
AseI	ATTAAT	1 cut(s)	674
AspLEI	GCGC	2 cut(s)	635, 643
AspS9I	GGNCC	1 cut(s)	596
AsuHPI	GGTGA	1 cut(s)	152
AsuII	TTCGAA	1 cut(s)	75
AvaI	CYCGRG	1 cut(s)	661
AvaII	GGWCC	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	662
BbvI	GCAGC	2 cut(s)	265, 523
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	395
BclI	TGATCA	1 cut(s)	103
BfaI	CTAG	2 cut(s)	42, 618
BisI	GCNGC	3 cut(s)	209, 279, 512
BlsI	GCNGC	3 cut(s)	210, 280, 513
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	596
BmeT110I	CYCGRG	1 cut(s)	661
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	395
BmsI	GCATC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	489
Bpu14I	TTCGAA	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	429, 589
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bse1I	ACTGG	4 cut(s)	119, 499, 506, 599
Bse3DI	GCAATG	2 cut(s)	487, 553
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	429, 589
BseGI	GGATG	1 cut(s)	284
BseMI	GCAATG	2 cut(s)	487, 553
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	4 cut(s)	119, 499, 506, 599
BseRI	GAGGAG	1 cut(s)	606
BseXI	GCAGC	2 cut(s)	265, 523
BsgI	GTGCAG	2 cut(s)	530, 612
Bsh1236I	CGCG	3 cut(s)	633, 641, 643
BshFI	GGCC	2 cut(s)	211, 588
BsiHKAI	GWGCWC	1 cut(s)	662
BsiHKCI	CYCGRG	1 cut(s)	661
BslFI	GGGAC	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	52
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	211, 588
BsoBI	CYCGRG	1 cut(s)	661
Bsp119I	TTCGAA	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	662
Bsp143I	GATC	5 cut(s)	17, 47, 103, 442, 456
BspACI	CCGC	3 cut(s)	208, 647, 655
BspANI	GGCC	2 cut(s)	211, 588
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	3 cut(s)	633, 641, 643
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	3 cut(s)	42, 437, 451
BspT104I	TTCGAA	1 cut(s)	75
BsrDI	GCAATG	2 cut(s)	487, 553
BsrI	ACTGG	4 cut(s)	119, 499, 506, 599
BssECI	CCNNGG	2 cut(s)	429, 589
BssMI	GATC	5 cut(s)	17, 47, 103, 442, 456
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	2 cut(s)	191, 415
Bst6I	CTCTTC	2 cut(s)	171, 327
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	2 cut(s)	631, 645
BstDEI	CTNAG	2 cut(s)	213, 447
BstF5I	GGATG	1 cut(s)	284
BstFNI	CGCG	3 cut(s)	633, 641, 643
BstHHI	GCGC	2 cut(s)	635, 643
BstKTI	GATC	5 cut(s)	20, 50, 106, 445, 459
BstMBI	GATC	5 cut(s)	17, 47, 103, 442, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	393
BstUI	CGCG	3 cut(s)	633, 641, 643
BstV1I	GCAGC	2 cut(s)	265, 523
BstX2I	RGATCY	1 cut(s)	47
BstXI	CCANNNNNNTGG	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	211, 588
BtsCI	GGATG	1 cut(s)	284
BtsIMutI	CAGTG	2 cut(s)	492, 513
Cac8I	GCNNGC	2 cut(s)	631, 645
CciI	TCATGA	1 cut(s)	100
CfoI	GCGC	2 cut(s)	635, 643
Cfr13I	GGNCC	1 cut(s)	596
CsiI	ACCWGGT	1 cut(s)	393
Csp6I	GTAC	1 cut(s)	615
CviAII	CATG	3 cut(s)	61, 67, 101
CviJI	RGCY	6 cut(s)	11, 147, 211, 514, 588, 621
CviKI_1	RGCY	6 cut(s)	11, 147, 211, 514, 588, 621
CviQI	GTAC	1 cut(s)	615
DdeI	CTNAG	2 cut(s)	213, 447
DpnI	GATC	5 cut(s)	19, 49, 105, 444, 458
DpnII	GATC	5 cut(s)	17, 47, 103, 442, 456
Eam1104I	CTCTTC	2 cut(s)	171, 327
EarI	CTCTTC	2 cut(s)	171, 327
Eco130I	CCWWGG	1 cut(s)	429
Eco47I	GGWCC	1 cut(s)	596
Eco88I	CYCGRG	1 cut(s)	661
EcoRI	GAATTC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	3 cut(s)	64, 70, 104
FaiI	YATR	7 cut(s)	23, 62, 68, 102, 315, 388, 390
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	3 cut(s)	60, 66, 100
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	3 cut(s)	209, 279, 512
FokI	GGATG	1 cut(s)	271
Fsp4HI	GCNGC	3 cut(s)	209, 279, 512
FspBI	CTAG	2 cut(s)	42, 618
GlaI	GCGC	2 cut(s)	634, 642
GluI	GCNGC	3 cut(s)	209, 279, 512
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	211, 588
HhaI	GCGC	2 cut(s)	635, 643
Hin1II	CATG	3 cut(s)	64, 70, 104
Hin6I	GCGC	2 cut(s)	633, 641
HinP1I	GCGC	2 cut(s)	633, 641
HphI	GGTGA	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	83, 263
Hpy188III	TCNNGA	6 cut(s)	101, 107, 245, 288, 446, 460
HpyAV	CCTTC	1 cut(s)	632
HpyCH4III	ACNGT	2 cut(s)	191, 415
HpyCH4V	TGCA	8 cut(s)	198, 297, 317, 364, 492, 511, 629, 670
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	2 cut(s)	213, 447
Hsp92II	CATG	3 cut(s)	64, 70, 104
HspAI	GCGC	2 cut(s)	633, 641
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	5 cut(s)	17, 47, 103, 442, 456
LmnI	GCTCC	2 cut(s)	263, 484
Lsp1109I	GCAGC	2 cut(s)	265, 523
LweI	GCATC	1 cut(s)	117
MabI	ACCWGGT	1 cut(s)	393
MaeI	CTAG	2 cut(s)	42, 618
MaeIII	GTNAC	2 cut(s)	158, 183
MalI	GATC	5 cut(s)	19, 49, 105, 444, 458
MboI	GATC	5 cut(s)	17, 47, 103, 442, 456
MboII	GAAGA	3 cut(s)	57, 158, 344
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	662
MluCI	AATT	8 cut(s)	31, 91, 139, 352, 365, 438, 518, 671
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	9 cut(s)	103, 141, 163, 174, 292, 427, 513, 584, 587
MseI	TTAA	3 cut(s)	96, 480, 674
MslI	CAYNNNNRTG	2 cut(s)	65, 642
MspR9I	CCNGG	1 cut(s)	395
MunI	CAATTG	1 cut(s)	438
Mva1269I	GAATGC	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	395
MvnI	CGCG	3 cut(s)	633, 641, 643
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	5 cut(s)	17, 47, 103, 442, 456
NlaIII	CATG	3 cut(s)	64, 70, 104
NlaIV	GGNNCC	1 cut(s)	225
NmeAIII	GCCGAG	1 cut(s)	614
NmuCI	GTSAC	1 cut(s)	158
NspV	TTCGAA	1 cut(s)	75
OliI	CACNNNNGTG	1 cut(s)	642
PagI	TCATGA	1 cut(s)	100
PctI	GAATGC	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	210, 280, 513
PshBI	ATTAAT	1 cut(s)	674
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	1 cut(s)	616
RsaNI	GTAC	1 cut(s)	615
RseI	CAYNNNNRTG	2 cut(s)	65, 642
SaqAI	TTAA	3 cut(s)	96, 480, 674
SatI	GCNGC	3 cut(s)	209, 279, 512
Sau3AI	GATC	5 cut(s)	17, 47, 103, 442, 456
Sau96I	GGNCC	1 cut(s)	596
ScrFI	CCNGG	1 cut(s)	395
SduI	GDGCHC	1 cut(s)	662
SetI	ASST	5 cut(s)	114, 229, 399, 431, 516
SexAI	ACCWGGT	1 cut(s)	393
SfaNI	GCATC	1 cut(s)	117
SfuI	TTCGAA	1 cut(s)	75
SinI	GGWCC	1 cut(s)	596
SmiMI	CAYNNNNRTG	2 cut(s)	65, 642
Sse9I	AATT	8 cut(s)	31, 91, 139, 352, 365, 438, 518, 671
SsiI	CCGC	3 cut(s)	208, 647, 655
SspMI	CTAG	2 cut(s)	42, 618
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	2 cut(s)	191, 415
TaqI	TCGA	4 cut(s)	16, 75, 125, 516
TasI	AATT	8 cut(s)	31, 91, 139, 352, 365, 438, 518, 671
TauI	GCSGC	1 cut(s)	211
Tru1I	TTAA	3 cut(s)	96, 480, 674
Tru9I	TTAA	3 cut(s)	96, 480, 674
TscAI	CASTG	2 cut(s)	499, 513
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	278, 511
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	158
TspGWI	ACGGA	2 cut(s)	40, 183
TspRI	CASTG	2 cut(s)	499, 513
VpaK11BI	GGWCC	1 cut(s)	596
VspI	ATTAAT	1 cut(s)	674
XapI	RAATTY	4 cut(s)	31, 91, 139, 352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XspI	CTAG	2 cut(s)	42, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.