AT1G50575

Possible lysine decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006355
Physical Location & Seq
Reverse (-)
18728634 .. 18730498
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50575.1

Sequence Viewer

Length: 921 bp
ATGGGGGTTTCGATGTTGGATTCCTCATGGAGTTTCCGATTATCCTCGAAGATGTCTCCTTCACCAACACAAAAACTCGCTAGCTCTTTGACAGAAAGAGATCCAATTTCTCTGAATTTGAGGTTTGATCATTCCATTAGGGCATATTCAGCTCGAGCTCTAAAGTGCAGGTCTGTTAAGTCTGAGGATTTTGTTGAGAGAAGTAGCCCATTTGAGGTTAAGAAAGAGCTTGAGATTTGCTTCGACCTCGTACATAGGCTCGGGAGAGGCATTGTGTACTTAGGTTCCGCCAGAATCCCACCAAACCATTCACATTATCTGCAAGCACAAGAGTTGAGCAGAGAAGCAGCAACTCTGTTGGACTGTACTACATGGTCTGGTGCTGGACCAGGGCTTATGGATGCTGTGACTGAAGGTGCTTTGGAAGCTGAGAAACCGGTCGGTGGCATCAAAATAGAAAAAGAAGCCGGTGAATGGACCGCATCGAAGTTTCATCCATATCTCCCTCCTCAGAATTACCATACTTGCAGGTTTTTCTCGGCGAGAAAGCATGGATTAGTAGATGCTGTGATTAGAAACAATGTATCTGAGAAGACGGCGATAATTGCACTTCCAGGTGGCATTGGCACGCTCGATGAGATGTTTGAGATTTTGGCATTGATTCAGCTCGAAAGGATTGGATCTGCATTGCCGGTTCCATTCATTGTGATGAATTATGATGCTTTCTATTCAAAGCTGCTTGAATTCATTGAGACTTGTGAAAACTTGGGAACTGTTTCTAAAGGAGAAGTTTCTGCACTGTGGAAGGTATGCAACAACAACTTTGAAGCTTTGACATACTTAGCTGAATTCTATGACTTGCCTGACGGTTCTGCAAAGCTGGAAACTGAACTTAGAAAAACCACTCCCACTCGTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lysine_decarbox

Protein Analysis

306

Amino Acids

33.97

Weight (kDa)

6.03

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lysine_decarbox PF03641 133 - 280 1.2e-26 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 159, 519
AciI CCGC 2 cut(s) 288, 480
AclWI GGATC 2 cut(s) 95, 688
AcsI RAATTY 3 cut(s) 115, 743, 848
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 3 cut(s) 252, 278, 367
AfiI CCNNNNNNNGG 4 cut(s) 214, 443, 474, 914
AgeI ACCGGT 1 cut(s) 436
AgsI TTSAA 3 cut(s) 732, 743, 827
AjnI CCWGG 2 cut(s) 388, 613
Alw21I GWGCWC 1 cut(s) 160
Alw26I GTCTC 2 cut(s) 60, 746
AlwI GGATC 2 cut(s) 95, 688
Ama87I CYCGRG 2 cut(s) 153, 260
ApeKI GCWGC 2 cut(s) 347, 736
ApoI RAATTY 3 cut(s) 115, 743, 848
AsiGI ACCGGT 1 cut(s) 436
Asp700I GAANNNNTTC 1 cut(s) 775
AspS9I GGNCC 2 cut(s) 386, 477
AsuHPI GGTGA 2 cut(s) 54, 482
AsuNHI GCTAGC 1 cut(s) 80
AvaI CYCGRG 2 cut(s) 153, 260
AvaII GGWCC 2 cut(s) 386, 477
BanII GRGCYC 1 cut(s) 160
BauI CACGAG 1 cut(s) 912
BbsI GAAGAC 1 cut(s) 599
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 2 cut(s) 359, 723
BceAI ACGGC 1 cut(s) 612
BciT130I CCWGG 2 cut(s) 390, 615
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 60, 746
BfaI CTAG 1 cut(s) 81
BfuAI ACCTGC 2 cut(s) 159, 519
BisI GCNGC 2 cut(s) 348, 737
BlsI GCNGC 2 cut(s) 349, 738
Bme1390I CCNGG 2 cut(s) 390, 615
Bme18I GGWCC 2 cut(s) 386, 477
BmeT110I CYCGRG 2 cut(s) 153, 260
BmgT120I GGNCC 2 cut(s) 386, 477
BmiI GGNNCC 2 cut(s) 286, 696
BmrFI CCNGG 2 cut(s) 390, 615
BmsI GCATC 5 cut(s) 391, 456, 491, 553, 709
BmtI GCTAGC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 599
BpuEI CTTGAG 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 389
BsaWI WCCGGW 1 cut(s) 436
Bsc4I CCNNNNNNNGG 4 cut(s) 214, 443, 474, 914
Bse118I RCCGGY 3 cut(s) 436, 467, 691
Bse3DI GCAATG 1 cut(s) 686
BseBI CCWGG 2 cut(s) 390, 615
BseDI CCNNGG 1 cut(s) 389
BseGI GGATG 2 cut(s) 406, 493
BseLI CCNNNNNNNGG 4 cut(s) 214, 443, 474, 914
BseMI GCAATG 1 cut(s) 686
BseMII CTCAG 4 cut(s) 174, 420, 524, 579
BseRI GAGGAG 1 cut(s) 498
BseXI GCAGC 2 cut(s) 359, 723
BsgI GTGCAG 2 cut(s) 187, 780
Bsh1285I CGRYCG 1 cut(s) 441
BshTI ACCGGT 1 cut(s) 436
BsiEI CGRYCG 1 cut(s) 441
BsiHKAI GWGCWC 1 cut(s) 160
BsiHKCI CYCGRG 2 cut(s) 153, 260
BsiSI CCGG 3 cut(s) 437, 468, 692
BslI CCNNNNNNNGG 4 cut(s) 214, 443, 474, 914
BsmAI GTCTC 2 cut(s) 60, 746
BsoBI CYCGRG 2 cut(s) 153, 260
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 3 cut(s) 100, 127, 680
BspACI CCGC 2 cut(s) 288, 480
BspCNI CTCAG 4 cut(s) 175, 421, 523, 580
BspLI GGNNCC 2 cut(s) 286, 696
BspMI ACCTGC 2 cut(s) 159, 519
BspOI GCTAGC 1 cut(s) 84
BspPI GGATC 2 cut(s) 95, 688
BsrDI GCAATG 1 cut(s) 686
BsrFI RCCGGY 3 cut(s) 436, 467, 691
BssAI RCCGGY 3 cut(s) 436, 467, 691
BssECI CCNNGG 1 cut(s) 389
BssMI GATC 3 cut(s) 100, 127, 680
BssSI CACGAG 1 cut(s) 912
Bst2BI CACGAG 1 cut(s) 912
Bst2UI CCWGG 2 cut(s) 390, 615
Bst4CI ACNGT 4 cut(s) 365, 775, 801, 869
BstC8I GCNNGC 3 cut(s) 82, 324, 629
BstDEI CTNAG 7 cut(s) 183, 280, 429, 510, 588, 841, 893
BstF5I GGATG 2 cut(s) 406, 493
BstKTI GATC 3 cut(s) 103, 130, 683
BstMAI GTCTC 2 cut(s) 60, 746
BstMBI GATC 3 cut(s) 100, 127, 680
BstMCI CGRYCG 1 cut(s) 441
BstMWI GCNNNNNNNGC 3 cut(s) 149, 425, 605
BstNI CCWGG 2 cut(s) 390, 615
BstSCI CCNGG 2 cut(s) 388, 613
BstV1I GCAGC 2 cut(s) 359, 723
BstV2I GAAGAC 1 cut(s) 599
BstX2I RGATCY 2 cut(s) 100, 680
BstYI RGATCY 2 cut(s) 100, 680
BtsCI GGATG 2 cut(s) 406, 493
BtsIMutI CAGTG 1 cut(s) 797
BveI ACCTGC 2 cut(s) 159, 519
Cac8I GCNNGC 3 cut(s) 82, 324, 629
Cfr10I RCCGGY 3 cut(s) 436, 467, 691
Cfr13I GGNCC 2 cut(s) 386, 477
Csp6I GTAC 3 cut(s) 251, 277, 366
CspAI ACCGGT 1 cut(s) 436
CviAII CATG 3 cut(s) 27, 372, 551
CviQI GTAC 3 cut(s) 251, 277, 366
DdeI CTNAG 7 cut(s) 183, 280, 429, 510, 588, 841, 893
DpnI GATC 3 cut(s) 102, 129, 682
DpnII GATC 3 cut(s) 100, 127, 680
EciI GGCGGA 1 cut(s) 277
Ecl136II GAGCTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 160
Eco47I GGWCC 2 cut(s) 386, 477
Eco53kI GAGCTC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 432
Eco88I CYCGRG 2 cut(s) 153, 260
EcoICRI GAGCTC 1 cut(s) 158
EcoRI GAATTC 2 cut(s) 743, 848
EcoRII CCWGG 2 cut(s) 388, 613
EcoT38I GRGCYC 1 cut(s) 160
FaeI CATG 3 cut(s) 30, 375, 554
FatI CATG 3 cut(s) 26, 371, 550
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 2 cut(s) 348, 737
FokI GGATG 2 cut(s) 413, 480
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 2 cut(s) 348, 737
FspBI CTAG 1 cut(s) 81
GluI GCNGC 2 cut(s) 348, 737
HapII CCGG 3 cut(s) 437, 468, 692
Hin1II CATG 3 cut(s) 30, 375, 554
HindIII AAGCTT 1 cut(s) 828
HinfI GANTC 3 cut(s) 20, 294, 661
HpaII CCGG 3 cut(s) 437, 468, 692
HphI GGTGA 2 cut(s) 54, 482
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 5 cut(s) 38, 114, 184, 513, 589
Hpy188III TCNNGA 1 cut(s) 262
Hpy8I GTNNAC 1 cut(s) 277
HpyAV CCTTC 3 cut(s) 69, 407, 799
HpyCH4III ACNGT 4 cut(s) 365, 775, 801, 869
HpyCH4V TGCA 8 cut(s) 168, 322, 528, 608, 686, 797, 813, 875
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 425, 605
HpyF3I CTNAG 7 cut(s) 183, 280, 429, 510, 588, 841, 893
Hsp92II CATG 3 cut(s) 30, 375, 554
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 3 cut(s) 100, 127, 680
Lsp1109I GCAGC 2 cut(s) 359, 723
LweI GCATC 5 cut(s) 391, 456, 491, 553, 709
MaeI CTAG 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 406
MalI GATC 3 cut(s) 102, 129, 682
MboI GATC 3 cut(s) 100, 127, 680
MboII GAAGA 2 cut(s) 61, 604
MflI RGATCY 2 cut(s) 100, 680
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 7 cut(s) 105, 115, 514, 603, 712, 743, 848
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 9 cut(s) 34, 55, 114, 178, 208, 257, 260, 516, 519
MroXI GAANNNNTTC 1 cut(s) 775
MseI TTAA 2 cut(s) 177, 219
MslI CAYNNNNRTG 1 cut(s) 707
MspI CCGG 3 cut(s) 437, 468, 692
MspR9I CCNGG 2 cut(s) 390, 615
MvaI CCWGG 2 cut(s) 390, 615
MwoI GCNNNNNNNGC 3 cut(s) 149, 425, 605
NdeII GATC 3 cut(s) 100, 127, 680
NheI GCTAGC 1 cut(s) 80
NlaIII CATG 3 cut(s) 30, 375, 554
NlaIV GGNNCC 2 cut(s) 286, 696
NmeAIII GCCGAG 1 cut(s) 518
NmuCI GTSAC 1 cut(s) 406
PaeR7I CTCGAG 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 775
PfeI GAWTC 3 cut(s) 20, 294, 661
PinAI ACCGGT 1 cut(s) 436
PkrI GCNGC 2 cut(s) 349, 738
Psp124BI GAGCTC 1 cut(s) 160
Psp6I CCWGG 2 cut(s) 388, 613
PspGI CCWGG 2 cut(s) 388, 613
PspN4I GGNNCC 2 cut(s) 286, 696
PspPI GGNCC 2 cut(s) 386, 477
PspXI VCTCGAGB 1 cut(s) 153
PsuI RGATCY 2 cut(s) 100, 680
RsaI GTAC 3 cut(s) 252, 278, 367
RsaNI GTAC 3 cut(s) 251, 277, 366
RseI CAYNNNNRTG 1 cut(s) 707
SacI GAGCTC 1 cut(s) 160
SaqAI TTAA 2 cut(s) 177, 219
SatI GCNGC 2 cut(s) 348, 737
Sau3AI GATC 3 cut(s) 100, 127, 680
Sau96I GGNCC 2 cut(s) 386, 477
ScrFI CCNGG 2 cut(s) 390, 615
SduI GDGCHC 1 cut(s) 160
SfaNI GCATC 5 cut(s) 391, 456, 491, 553, 709
Sfr274I CTCGAG 1 cut(s) 153
SinI GGWCC 2 cut(s) 386, 477
SlaI CTCGAG 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 707
SmlI CTYRAG 2 cut(s) 153, 230
SmoI CTYRAG 2 cut(s) 153, 230
Sse9I AATT 7 cut(s) 105, 115, 514, 603, 712, 743, 848
SsiI CCGC 2 cut(s) 288, 480
SspMI CTAG 1 cut(s) 81
SstI GAGCTC 1 cut(s) 160
StyD4I CCNGG 2 cut(s) 388, 613
TaaI ACNGT 4 cut(s) 365, 775, 801, 869
TaqI TCGA 7 cut(s) 11, 47, 154, 243, 485, 633, 669
TasI AATT 7 cut(s) 105, 115, 514, 603, 712, 743, 848
TatI WGTACW 2 cut(s) 276, 365
TfiI GAWTC 3 cut(s) 20, 294, 661
Tru1I TTAA 2 cut(s) 177, 219
Tru9I TTAA 2 cut(s) 177, 219
TscAI CASTG 1 cut(s) 804
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 2 cut(s) 347, 736
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 4 cut(s) 482, 691, 725, 736
TspRI CASTG 1 cut(s) 804
VpaK11BI GGWCC 2 cut(s) 386, 477
XapI RAATTY 3 cut(s) 115, 743, 848
XhoI CTCGAG 1 cut(s) 153
XmnI GAANNNNTTC 1 cut(s) 775
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.