Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006355

Physical Location & Seq

Genomic Coordinates Reverse (-)

46070596 .. 46071777

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G029680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTTGCAAAATGTAGAGTGGAACAGCTTTGCCTCTTCCCCTATGACCTCATCCAGCAAGAGCTGTAGTGATATCCTAGTCATGAAAGAGATAGAACGATGCTATGAACTGATACACAGACTTGGGAGAGGGGTTGTGTATTTGGGATCTTCAAGGATGGGACCTGATCATTCACATTATTTGCAAGTACTTGAGTTGGGTAGAGAGATTGCAAACCTTTTGGAATGTACTTCATGGACGGGGGCTGGTCCAGGGCTAATGGATGCTGCTACTAAAGGTGCTTTGCAAGCAGGAAAATCAGTTGGTGGATTTAAGATTGGTAAAGAAGCTGGCGAATGGACAGCGTCAAATTCCCATCCTTACCTGCCTTCAGAAGTTTATCTAACATGCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lysine_decarbox

Protein Analysis

131

Amino Acids

14.26

Weight (kDa)

6.41

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50575
fragaria_vesca	FvH4_3g23860 FvH4_3g23860 FvH4_3g23860 FvH4_3g23860
malus_domestica	MD11G1206400.v1.1
prunus_persica	Prupe.4G230500_v2.0.a1
pyrus_communis	pycom11g17950
rosa_chinensis	RchiOBHm_Chr5g0042111 RchiOBHm_Chr5g0042181
rosa_laevigata	RLG00000034110
rosa_multiflora	Rmu_sc0001715.1_g000037 Rmu_sc0008382.1_g000017
rosa_roxburghii	Rroxscaffold_1G00038550
rosa_rugosa	Rorug05G0197900 Rorug05G0198000 Rorug05G0198400 Rorug05G0198500 Rorug05G0198600
rosa_samantha	Rh4CG186500 Rh5AG283200 Rh5BG288800 Rh5BG289100 Rh5DG298000 Rh7DG390700
rosa_wichuraiana	Rw0G001460 Rw5G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	372, 381
AclWI	GGATC	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	349
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	2 cut(s)	189, 229
AgsI	TTSAA	1 cut(s)	153
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	3 cut(s)	27, 63, 329
AluI	AGCT	3 cut(s)	27, 63, 329
AlwI	GGATC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	161, 248
AvaII	GGWCC	2 cut(s)	161, 248
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	2 cut(s)	151, 363
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	1 cut(s)	166
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	64
BfuAI	ACCTGC	2 cut(s)	372, 381
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
BmcAI	AGTACT	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	2 cut(s)	161, 248
BmgT120I	GGNCC	2 cut(s)	161, 248
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	2 cut(s)	89, 253
BpuEI	CTTGAG	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	251
BseGI	GGATG	4 cut(s)	50, 162, 268, 355
BseXI	GCAGC	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	146, 166
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	162
BspMI	ACCTGC	2 cut(s)	372, 381
BspPI	GGATC	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	2 cut(s)	146, 166
Bst2UI	CCWGG	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	40
BstC8I	GCNNGC	2 cut(s)	288, 331
BstF5I	GGATG	4 cut(s)	50, 162, 268, 355
BstKTI	GATC	2 cut(s)	149, 169
BstMBI	GATC	2 cut(s)	146, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BtsCI	GGATG	4 cut(s)	50, 162, 268, 355
BveI	ACCTGC	2 cut(s)	372, 381
Cac8I	GCNNGC	2 cut(s)	288, 331
CciI	TCATGA	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	161, 248
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	2 cut(s)	188, 228
CviAII	CATG	3 cut(s)	82, 234, 387
CviJI	RGCY	5 cut(s)	27, 63, 245, 256, 329
CviKI_1	RGCY	5 cut(s)	27, 63, 245, 256, 329
CviQI	GTAC	2 cut(s)	188, 228
DpnI	GATC	2 cut(s)	148, 168
DpnII	GATC	2 cut(s)	146, 166
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco32I	GATATC	1 cut(s)	73
Eco47I	GGWCC	2 cut(s)	161, 248
Eco57I	CTGAAG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	73
FaeI	CATG	3 cut(s)	85, 237, 390
FaiI	YATR	5 cut(s)	44, 83, 105, 235, 388
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	3 cut(s)	81, 233, 386
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	4 cut(s)	37, 169, 275, 342
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	1 cut(s)	267
HgaI	GACGC	1 cut(s)	333
Hin1II	CATG	3 cut(s)	85, 237, 390
Hpy188I	TCNGA	1 cut(s)	373
Hpy188III	TCNNGA	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	378
HpyCH4V	TGCA	5 cut(s)	7, 184, 212, 286, 390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
Hsp92II	CATG	3 cut(s)	85, 237, 390
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	146, 166
LpnPI	CCDG	9 cut(s)	67, 177, 231, 237, 264, 276, 315, 376, 377
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	2 cut(s)	89, 253
MaeI	CTAG	1 cut(s)	77
MalI	GATC	2 cut(s)	148, 168
MboI	GATC	2 cut(s)	146, 166
MboII	GAAGA	2 cut(s)	27, 141
MflI	RGATCY	1 cut(s)	146
MluCI	AATT	1 cut(s)	349
MnlI	CCTC	3 cut(s)	43, 58, 122
MseI	TTAA	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	2 cut(s)	146, 166
NlaIII	CATG	3 cut(s)	85, 237, 390
NlaIV	GGNNCC	1 cut(s)	162
NspI	RCATGY	1 cut(s)	390
PagI	TCATGA	1 cut(s)	81
PflFI	GACNNNGTC	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	161, 248
PspPPI	RGGWCCY	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	146
PsyI	GACNNNGTC	1 cut(s)	343
RsaI	GTAC	2 cut(s)	189, 229
RsaNI	GTAC	2 cut(s)	188, 228
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	2 cut(s)	146, 166
Sau96I	GGNCC	2 cut(s)	161, 248
ScaI	AGTACT	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	252
SetI	ASST	9 cut(s)	29, 50, 65, 166, 219, 280, 331, 366, 395
SfaNI	GCATC	2 cut(s)	89, 253
SfcI	CTRYAG	1 cut(s)	64
SinI	GGWCC	2 cut(s)	161, 248
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	349
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	250
TasI	AATT	1 cut(s)	349
TatI	WGTACW	2 cut(s)	187, 227
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	3 cut(s)	98, 120, 222
Tth111I	GACNNNGTC	1 cut(s)	343
VpaK11BI	GGWCC	2 cut(s)	161, 248
XapI	RAATTY	1 cut(s)	349
XceI	RCATGY	1 cut(s)	390
XspI	CTAG	1 cut(s)	77
ZrmI	AGTACT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.