Rorug05G0198400

Cytokinin riboside 5'-monophosphate phosphoribohydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006355
Physical Location & Seq
Forward (+)
19665933 .. 19666205
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0198400.1

Sequence Viewer

Length: 273 bp
ATGGTCGATGTGGTTGGGAATGTCATCTCTGGTGGGCTTTTCCTCTCTCCAATTCCTGCGTTCATACAAATATGGAGAAAAAAAAAAATGTACGTGGAGGCTTTTGATCCAAAACCTTACCTTACAACAGTGTTGAACTGTTTATTATGGTGTTACTACGGATTGCCATTTGTTAATCCAAACAACATTTTAGTTGTCACCATTAATAGAATTGGGCTAATTATAGAGCTCATATATCTTGGCATATTCTTATATTATGCTGTAGCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lysine_decarbox

Protein Analysis

90

Amino Acids

10.27

Weight (kDa)

8.98

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 2 - 88 7.5e-18 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 101
AfaI GTAC 1 cut(s) 92
AgsI TTSAA 1 cut(s) 136
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
Alw21I GWGCWC 1 cut(s) 231
AlwI GGATC 1 cut(s) 101
AseI ATTAAT 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 190
BanII GRGCYC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 261
BsaAI YACGTR 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 106
BspPI GGATC 1 cut(s) 101
BssMI GATC 1 cut(s) 106
Bst4CI ACNGT 2 cut(s) 130, 140
BstBAI YACGTR 1 cut(s) 94
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 135
Csp6I GTAC 1 cut(s) 91
CviJI RGCY 4 cut(s) 37, 101, 217, 229
CviKI_1 RGCY 4 cut(s) 37, 101, 217, 229
CviQI GTAC 1 cut(s) 91
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 231
Eco53kI GAGCTC 1 cut(s) 229
EcoICRI GAGCTC 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 231
FaiI YATR 9 cut(s) 65, 73, 148, 224, 233, 235, 245, 253, 258
FriOI GRGCYC 1 cut(s) 231
HphI GGTGA 1 cut(s) 190
HpyCH4III ACNGT 2 cut(s) 130, 140
HpyCH4IV ACGT 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 93
Kzo9I GATC 1 cut(s) 106
LpnPI CCDG 2 cut(s) 15, 69
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 2 cut(s) 152, 196
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 3 cut(s) 51, 210, 219
MnlI CCTC 2 cut(s) 53, 91
MseI TTAA 2 cut(s) 174, 204
NdeII GATC 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 196
Ppu21I YACGTR 1 cut(s) 94
PshBI ATTAAT 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 231
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 2 cut(s) 174, 204
Sau3AI GATC 1 cut(s) 106
SduI GDGCHC 1 cut(s) 231
SetI ASST 4 cut(s) 96, 118, 123, 231
SfcI CTRYAG 1 cut(s) 261
SgeI CNNG 4 cut(s) 42, 68, 106, 251
Sse9I AATT 3 cut(s) 51, 210, 219
SstI GAGCTC 1 cut(s) 231
TaaI ACNGT 2 cut(s) 130, 140
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 6
TasI AATT 3 cut(s) 51, 210, 219
Tru1I TTAA 2 cut(s) 174, 204
Tru9I TTAA 2 cut(s) 174, 204
TscAI CASTG 1 cut(s) 135
TseFI GTSAC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 52
TspGWI ACGGA 1 cut(s) 174
TspRI CASTG 1 cut(s) 135
VspI ATTAAT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.