MD11G1206400.v1.1

Cytokinin riboside 5'-monophosphate phosphoribohydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0006355
Physical Location & Seq
Reverse (-)
30103125 .. 30105878
2754 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1206400.v1.1.491

Sequence Viewer

Length: 897 bp
ATGGGGTTTTCGGTGCTGGGATCAGTGGGCTCTCATATTTTAGTAAGAAATTCTTACGAAGGGACTTTGAAGATTCAATCTTTCAGGGAAAGAGAGAGACCCACCATTAGTTTCGAGCTCTCAAGGTCGAGGTCCTACCATGGAAGAATCAAGTCGAGCAAGTCTGAATTACTTGACTTTGATGAGAGAACAAGCCCAAATGAGGTCAGGAAAGAGATACAACGATGTTATGAACTGATACACAGACTTGGGAGAGGAGTCGTGTATTTGGGTTCTTCAAGGATGGGACCTGATCATTCACATTATTCGAAAACGCTAGAGTTAAGCACAGAGATTGCAAATCTTTTGGGATGTACTTCATGGACTGGGGCTGGTCCAGGACTAATGGATGCTGCTACTAAAGGTGCTTTGCGAGCAGGAAAATCGGTTGGTGGATTTAAGATTGGTAAAGAAGCTGGTGAATGGACAGCATCAAATTATCATCCCTACCTACCATCAGAAGTGTTTTTCTCTGCTAGGAAGCATGGTTTGGTAGATGCTGTAGTTAGAAGCAGTAGTTCCGAACGGACTGCTGTTGTTGCTCTCCCTGGTGGGATTGGTACTCTCGATGAAGTTTTTGAGATATTAGCACTGATTCAACTGGAACGAATTGGGTCAAAGCTTCCAGTTCCGTTGTTGTTGATGAACTACGACTCATTCTATTCAAAGCTACTGAACTTCCTTGATGATTGTGAGGACTGGGGCACCCTCTCCAAGGGAGAGCTTGCATCACTTTGGAAGGTTTGTGATAGCAACTCAGAGGCTTTGGTTTATTTGTCAGAGTTTTACAACTTACCTCTTAGCGAGAAAGGAAGGCATGACAACGAATTGGAAAGTGCAAGCGGAAAATTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lysine_decarbox

Protein Analysis

299

Amino Acids

32.92

Weight (kDa)

6.47

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lysine_decarbox PF03641 129 - 270 2.2e-23 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 743
AciI CCGC 1 cut(s) 882
AclWI GGATC 1 cut(s) 28
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 2 cut(s) 355, 601
AfiI CCNNNNNNNGG 2 cut(s) 202, 754
AgsI TTSAA 5 cut(s) 70, 77, 279, 638, 705
AjnI CCWGG 2 cut(s) 376, 586
AjuI GAANNNNNNNTTGG 2 cut(s) 512, 544
AluBI AGCT 5 cut(s) 118, 455, 661, 709, 763
AluI AGCT 5 cut(s) 118, 455, 661, 709, 763
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 392
ApoI RAATTY 1 cut(s) 49
AspS9I GGNCC 3 cut(s) 132, 287, 374
AsuHPI GGTGA 1 cut(s) 470
AsuII TTCGAA 1 cut(s) 308
AvaII GGWCC 3 cut(s) 132, 287, 374
BaeGI GKGCMC 1 cut(s) 746
BanI GGYRCC 1 cut(s) 743
BanII GRGCYC 2 cut(s) 32, 120
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 379
BccI CCATC 2 cut(s) 277, 502
BcgI CGANNNNNNTGC 4 cut(s) 405, 439, 551, 585
BciT130I CCWGG 2 cut(s) 378, 588
BclI TGATCA 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 91
BfaI CTAG 2 cut(s) 317, 516
BfmI CTRYAG 1 cut(s) 540
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
Bme1390I CCNGG 2 cut(s) 378, 588
Bme18I GGWCC 3 cut(s) 132, 287, 374
BmgT120I GGNCC 3 cut(s) 132, 287, 374
BmiI GGNNCC 2 cut(s) 288, 745
BmrFI CCNGG 2 cut(s) 378, 588
BmrI ACTGGG 2 cut(s) 375, 748
BmsI GCATC 4 cut(s) 379, 479, 526, 776
BmuI ACTGGG 2 cut(s) 375, 748
Bpu14I TTCGAA 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 106
BsaI GGTCTC 1 cut(s) 91
BsaJI CCNNGG 3 cut(s) 139, 586, 753
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 754
Bse1I ACTGG 4 cut(s) 370, 645, 665, 743
BseBI CCWGG 2 cut(s) 378, 588
BseDI CCNNGG 3 cut(s) 139, 586, 753
BseGI GGATG 4 cut(s) 288, 356, 394, 481
BseLI CCNNNNNNNGG 2 cut(s) 202, 754
BseMII CTCAG 1 cut(s) 810
BseNI ACTGG 4 cut(s) 370, 645, 665, 743
BseRI GAGGAG 1 cut(s) 270
BseSI GKGCMC 1 cut(s) 746
BseXI GCAGC 1 cut(s) 379
BseYI CCCAGC 1 cut(s) 16
BshNI GGYRCC 1 cut(s) 743
BsiHKAI GWGCWC 1 cut(s) 120
BslFI GGGAC 2 cut(s) 76, 300
BslI CCNNNNNNNGG 2 cut(s) 202, 754
BsmAI GTCTC 1 cut(s) 91
BsmFI GGGAC 2 cut(s) 76, 300
Bso31I GGTCTC 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 308
Bsp1286I GDGCHC 3 cut(s) 32, 120, 746
Bsp143I GATC 2 cut(s) 20, 292
Bsp19I CCATGG 1 cut(s) 139
BspACI CCGC 1 cut(s) 882
BspCNI CTCAG 1 cut(s) 809
BspLI GGNNCC 2 cut(s) 288, 745
BspPI GGATC 1 cut(s) 28
BspT104I TTCGAA 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 743
BspTNI GGTCTC 1 cut(s) 91
BsrI ACTGG 4 cut(s) 370, 645, 665, 743
BssECI CCNNGG 3 cut(s) 139, 586, 753
BssMI GATC 2 cut(s) 20, 292
BssT1I CCWWGG 2 cut(s) 139, 753
Bst2UI CCWGG 2 cut(s) 378, 588
BstBI TTCGAA 1 cut(s) 308
BstC8I GCNNGC 3 cut(s) 414, 765, 880
BstDEI CTNAG 2 cut(s) 796, 839
BstDSI CCRYGG 1 cut(s) 139
BstENI CCTNNNNNAGG 1 cut(s) 752
BstF5I GGATG 4 cut(s) 288, 356, 394, 481
BstKTI GATC 2 cut(s) 23, 295
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 2 cut(s) 20, 292
BstMWI GCNNNNNNNGC 2 cut(s) 413, 578
BstNI CCWGG 2 cut(s) 378, 588
BstSCI CCNGG 2 cut(s) 376, 586
BstSFI CTRYAG 1 cut(s) 540
BstSLI GKGCMC 1 cut(s) 746
BstV1I GCAGC 1 cut(s) 379
BtgI CCRYGG 1 cut(s) 139
BtsCI GGATG 4 cut(s) 288, 356, 394, 481
BtsIMutI CAGTG 2 cut(s) 30, 629
Cac8I GCNNGC 3 cut(s) 414, 765, 880
Cfr13I GGNCC 3 cut(s) 132, 287, 374
Csp6I GTAC 2 cut(s) 354, 600
CviAII CATG 4 cut(s) 140, 360, 524, 857
CviJI RGCY 9 cut(s) 30, 118, 195, 371, 455, 661, 709, 763, 803
CviKI_1 RGCY 9 cut(s) 30, 118, 195, 371, 455, 661, 709, 763, 803
CviQI GTAC 2 cut(s) 354, 600
DdeI CTNAG 2 cut(s) 796, 839
DpnI GATC 2 cut(s) 22, 294
DpnII GATC 2 cut(s) 20, 292
Ecl136II GAGCTC 1 cut(s) 118
Eco130I CCWWGG 2 cut(s) 139, 753
Eco24I GRGCYC 2 cut(s) 32, 120
Eco31I GGTCTC 1 cut(s) 91
Eco47I GGWCC 3 cut(s) 132, 287, 374
Eco53kI GAGCTC 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 118
EcoNI CCTNNNNNAGG 1 cut(s) 752
EcoO109I RGGNCCY 2 cut(s) 132, 287
EcoRII CCWGG 2 cut(s) 376, 586
EcoT14I CCWWGG 2 cut(s) 139, 753
EcoT38I GRGCYC 2 cut(s) 32, 120
ErhI CCWWGG 2 cut(s) 139, 753
FaeI CATG 4 cut(s) 143, 363, 527, 860
FaiI YATR 6 cut(s) 36, 141, 231, 361, 525, 858
FalI AAGNNNNNCTT 2 cut(s) 37, 69
FaqI GGGAC 2 cut(s) 76, 300
FatI CATG 4 cut(s) 139, 359, 523, 856
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 4 cut(s) 295, 363, 401, 468
FriOI GRGCYC 2 cut(s) 32, 120
Fsp4HI GCNGC 1 cut(s) 393
FspBI CTAG 2 cut(s) 317, 516
GluI GCNGC 1 cut(s) 393
GsaI CCCAGC 1 cut(s) 20
Hin1II CATG 4 cut(s) 143, 363, 527, 860
HindIII AAGCTT 1 cut(s) 659
HinfI GANTC 5 cut(s) 73, 147, 258, 634, 692
HphI GGTGA 1 cut(s) 470
Hpy188I TCNGA 5 cut(s) 166, 499, 562, 799, 820
Hpy188III TCNNGA 2 cut(s) 208, 605
HpyAV CCTTC 3 cut(s) 53, 772, 846
HpyCH4V TGCA 3 cut(s) 338, 767, 878
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 578
HpyF3I CTNAG 2 cut(s) 796, 839
Hsp92II CATG 4 cut(s) 143, 363, 527, 860
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 2 cut(s) 20, 292
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 4 cut(s) 379, 479, 526, 776
MaeI CTAG 2 cut(s) 317, 516
MalI GATC 2 cut(s) 22, 294
MboI GATC 2 cut(s) 20, 292
MboII GAAGA 3 cut(s) 82, 156, 267
MhlI GDGCHC 3 cut(s) 32, 120, 746
MluCI AATT 6 cut(s) 49, 167, 475, 648, 866, 887
MlyI GAGTC 2 cut(s) 267, 686
MnlI CCTC 7 cut(s) 123, 196, 248, 727, 758, 793, 846
MseI TTAA 3 cut(s) 323, 438, 895
MspR9I CCNGG 2 cut(s) 378, 588
MvaI CCWGG 2 cut(s) 378, 588
MwoI GCNNNNNNNGC 2 cut(s) 413, 578
NcoI CCATGG 1 cut(s) 139
NdeII GATC 2 cut(s) 20, 292
NlaIII CATG 4 cut(s) 143, 363, 527, 860
NlaIV GGNNCC 2 cut(s) 288, 745
NspV TTCGAA 1 cut(s) 308
PfeI GAWTC 3 cut(s) 73, 147, 634
PfoI TCCNGGA 1 cut(s) 376
PkrI GCNGC 1 cut(s) 394
PleI GAGTC 2 cut(s) 266, 686
PpsI GAGTC 2 cut(s) 266, 686
PpuMI RGGWCCY 2 cut(s) 132, 287
Psp124BI GAGCTC 1 cut(s) 120
Psp5II RGGWCCY 2 cut(s) 132, 287
Psp6I CCWGG 2 cut(s) 376, 586
PspFI CCCAGC 1 cut(s) 16
PspGI CCWGG 2 cut(s) 376, 586
PspN4I GGNNCC 2 cut(s) 288, 745
PspPI GGNCC 3 cut(s) 132, 287, 374
PspPPI RGGWCCY 2 cut(s) 132, 287
RsaI GTAC 2 cut(s) 355, 601
RsaNI GTAC 2 cut(s) 354, 600
SacI GAGCTC 1 cut(s) 120
SaqAI TTAA 3 cut(s) 323, 438, 895
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 2 cut(s) 20, 292
Sau96I GGNCC 3 cut(s) 132, 287, 374
SchI GAGTC 2 cut(s) 267, 686
ScrFI CCNGG 2 cut(s) 378, 588
SduI GDGCHC 3 cut(s) 32, 120, 746
SfaNI GCATC 4 cut(s) 379, 479, 526, 776
SfcI CTRYAG 1 cut(s) 540
SfuI TTCGAA 1 cut(s) 308
SinI GGWCC 3 cut(s) 132, 287, 374
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
Sse9I AATT 6 cut(s) 49, 167, 475, 648, 866, 887
SsiI CCGC 1 cut(s) 882
SspMI CTAG 2 cut(s) 317, 516
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 2 cut(s) 376, 586
StyI CCWWGG 2 cut(s) 139, 753
TaqI TCGA 5 cut(s) 114, 128, 155, 308, 606
TasI AATT 6 cut(s) 49, 167, 475, 648, 866, 887
TatI WGTACW 1 cut(s) 353
TfiI GAWTC 3 cut(s) 73, 147, 634
Tru1I TTAA 3 cut(s) 323, 438, 895
Tru9I TTAA 3 cut(s) 323, 438, 895
TscAI CASTG 2 cut(s) 30, 636
TseI GCWGC 1 cut(s) 392
TspDTI ATGAA 4 cut(s) 246, 348, 624, 698
TspGWI ACGGA 2 cut(s) 580, 660
TspRI CASTG 2 cut(s) 30, 636
VpaK11BI GGWCC 3 cut(s) 132, 287, 374
XagI CCTNNNNNAGG 1 cut(s) 752
XapI RAATTY 1 cut(s) 49
XspI CTAG 2 cut(s) 317, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.