Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006355

Physical Location & Seq

Genomic Coordinates Forward (+)

16930472 .. 16932559

Gene Structure 2088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGGGTTTTCGGTGTTGGGATCATTGGGTTCTCATGTTTTTGTAAGAACTTCTCATCCGAGACCTTTAACGATTCAATCGGTCAGAGAAAGAGAGAGGCGCAACATTAGTTTCAAGCTCTCAAGGTTTAAGGTCATGTCACGCAAGTCCGAATTAGTTGATTTTGATGAGAGAACCAGCCCGATCGAGGTCAGGAAAGAGATTGAAAGATGTTATGAACTGATACACAGACTTGGGAGAGGGGTTGTGTATTTGGGATCTTCAAGGATGGGACCTGATCATTCACATTATTTGCAAGTACTTGAGTTGGGTAGGGAGATTGCAAACCTTTTGGAATGTACTTCATGGACGGGGGCTGGTCCAGGGCTAATGGATGCTGCTACGAAAGGTGCTTTGCAAGCAGGAAAACCAGTTGGTGGATTTAAGATTGGCAAAGAAGCTGGAGAATGGACAGCGTCAAATTACCATCCTTACCTACCTTCAGAAGTTTATCTCACATGCAGGTTTTTCTCTGCTAGAAAACATGGGTTGGTAGATGCTGCAGTTAGAAGCAGCAGTGCTGATAAGACTGCAGTAGTTGCTCTCCCCGGTGGGATTGGTACTCTAGATGAAATGTTTGAGATATTAGCACTAATTCAGCTACAGCGGATTGGATCAGAGCTTCCAGTTCCATTCTTGTTGATGAATTATGACTCATTCTATTCAAAGCTACTGGACTTTCTTGATGATTGTGAGGTTTGGGGTACTCTCTCCAAGGGAGAGGTTTCATGTCTGTGGAAGGTTTGTGATAGCAACTCTGAGGCTCTATCTTATTTGGCTGAGTTTTATAACTTACATGCTAGTGACAAAGATAACCATGCAAAAGAATTGCTTAGTGCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lysine_decarbox

Protein Analysis

295

Amino Acids

32.7

Weight (kDa)

6.51

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LDcluster4	PF18306	85 - 206	7.8e-06	SLOG cluster4 family
Lysine_decarbox	PF03641	124 - 271	2e-23	Possible lysine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50575
fragaria_vesca	FvH4_3g23860 FvH4_3g23860 FvH4_3g23860 FvH4_3g23860
malus_domestica	MD11G1206400.v1.1
prunus_persica	Prupe.4G230500_v2.0.a1
pyrus_communis	pycom11g17950
rosa_chinensis	RchiOBHm_Chr5g0042111 RchiOBHm_Chr5g0042181
rosa_laevigata	RLG00000034110
rosa_multiflora	Rmu_sc0001715.1_g000037 Rmu_sc0008382.1_g000017
rosa_roxburghii	Rroxscaffold_1G00038550
rosa_rugosa	Rorug05G0197900 Rorug05G0198000 Rorug05G0198400 Rorug05G0198500 Rorug05G0198600
rosa_samantha	Rh4CG186500 Rh5AG283200 Rh5BG288800 Rh5BG289100 Rh5DG298000 Rh7DG390700
rosa_wichuraiana	Rw0G001460 Rw5G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	828
Acc36I	ACCTGC	1 cut(s)	492
AccB7I	CCANNNNNTGG	1 cut(s)	416
AciI	CCGC	1 cut(s)	646
AclWI	GGATC	3 cut(s)	28, 265, 661
AcuI	CTGAAG	1 cut(s)	465
AfaI	GTAC	4 cut(s)	300, 340, 601, 745
AfiI	CCNNNNNNNGG	2 cut(s)	187, 416
AgsI	TTSAA	5 cut(s)	77, 115, 206, 264, 705
AjnI	CCWGG	1 cut(s)	361
AloI	GAACNNNNNNTCC	2 cut(s)	40, 72
AluBI	AGCT	5 cut(s)	118, 440, 640, 661, 709
AluI	AGCT	5 cut(s)	118, 440, 640, 661, 709
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	3 cut(s)	28, 265, 661
ApeKI	GCWGC	3 cut(s)	377, 539, 552
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	272, 359
AsuC2I	CCSGG	1 cut(s)	588
AvaII	GGWCC	2 cut(s)	272, 359
BbvI	GCAGC	3 cut(s)	364, 526, 564
BccI	CCATC	2 cut(s)	262, 474
BciT130I	CCWGG	1 cut(s)	363
BclI	TGATCA	1 cut(s)	277
BcnI	CCSGG	1 cut(s)	588
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	3 cut(s)	516, 605, 840
BfmI	CTRYAG	3 cut(s)	540, 570, 641
BfuAI	ACCTGC	1 cut(s)	492
BisI	GCNGC	3 cut(s)	378, 540, 553
BlsI	GCNGC	3 cut(s)	379, 541, 554
BmcAI	AGTACT	1 cut(s)	300
Bme1390I	CCNGG	2 cut(s)	363, 588
Bme18I	GGWCC	2 cut(s)	272, 359
BmgT120I	GGNCC	2 cut(s)	272, 359
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	2 cut(s)	363, 588
BmsI	GCATC	2 cut(s)	364, 526
BpmI	CTGGAG	1 cut(s)	462
BpuEI	CTTGAG	2 cut(s)	106, 323
BpuMI	CCSGG	1 cut(s)	588
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	3 cut(s)	362, 586, 753
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 416
Bse1I	ACTGG	3 cut(s)	410, 665, 717
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	362, 586, 753
BseGI	GGATG	4 cut(s)	55, 273, 379, 466
BseLI	CCNNNNNNNGG	2 cut(s)	187, 416
BseMII	CTCAG	2 cut(s)	789, 810
BseNI	ACTGG	3 cut(s)	410, 665, 717
BseXI	GCAGC	3 cut(s)	364, 526, 564
Bsh1285I	CGRYCG	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	588
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	2 cut(s)	187, 416
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	285
Bso31I	GGTCTC	1 cut(s)	55
Bsp143I	GATC	5 cut(s)	20, 183, 257, 277, 653
BspACI	CCGC	1 cut(s)	646
BspCNI	CTCAG	2 cut(s)	790, 811
BspLI	GGNNCC	1 cut(s)	273
BspMAI	CTGCAG	2 cut(s)	544, 574
BspMI	ACCTGC	1 cut(s)	492
BspPI	GGATC	3 cut(s)	28, 265, 661
BspTNI	GGTCTC	1 cut(s)	55
BsrI	ACTGG	3 cut(s)	410, 665, 717
BssECI	CCNNGG	3 cut(s)	362, 586, 753
BssMI	GATC	5 cut(s)	20, 183, 257, 277, 653
BssT1I	CCWWGG	1 cut(s)	753
Bst2UI	CCWGG	1 cut(s)	363
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstC8I	GCNNGC	1 cut(s)	399
BstDEI	CTNAG	3 cut(s)	798, 819, 872
BstF5I	GGATG	4 cut(s)	55, 273, 379, 466
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	5 cut(s)	23, 186, 260, 280, 656
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	5 cut(s)	20, 183, 257, 277, 653
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 578
BstNI	CCWGG	1 cut(s)	363
BstNSI	RCATGY	2 cut(s)	501, 839
BstSCI	CCNGG	2 cut(s)	361, 586
BstSFI	CTRYAG	3 cut(s)	540, 570, 641
BstV1I	GCAGC	3 cut(s)	364, 526, 564
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
BtsCI	GGATG	4 cut(s)	55, 273, 379, 466
BtsI	GCAGTG	1 cut(s)	562
BtsIMutI	CAGTG	1 cut(s)	562
BveI	ACCTGC	1 cut(s)	492
Cac8I	GCNNGC	1 cut(s)	399
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	272, 359
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	4 cut(s)	299, 339, 600, 744
CviAII	CATG	8 cut(s)	35, 136, 345, 498, 524, 768, 836, 857
CviQI	GTAC	4 cut(s)	299, 339, 600, 744
DdeI	CTNAG	3 cut(s)	798, 819, 872
DpnI	GATC	5 cut(s)	22, 185, 259, 279, 655
DpnII	GATC	5 cut(s)	20, 183, 257, 277, 653
Eco130I	CCWWGG	1 cut(s)	753
Eco31I	GGTCTC	1 cut(s)	55
Eco47I	GGWCC	2 cut(s)	272, 359
Eco57I	CTGAAG	1 cut(s)	465
EcoO109I	RGGNCCY	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	753
FaeI	CATG	8 cut(s)	38, 139, 348, 501, 527, 771, 839, 860
FalI	AAGNNNNNCTT	1 cut(s)	855
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	8 cut(s)	34, 135, 344, 497, 523, 767, 835, 856
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	3 cut(s)	378, 540, 553
FokI	GGATG	4 cut(s)	42, 280, 386, 453
Fsp4HI	GCNGC	3 cut(s)	378, 540, 553
FspBI	CTAG	3 cut(s)	516, 605, 840
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	3 cut(s)	378, 540, 553
GsuI	CTGGAG	1 cut(s)	462
HapII	CCGG	1 cut(s)	588
HgaI	GACGC	1 cut(s)	444
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	8 cut(s)	38, 139, 348, 501, 527, 771, 839, 860
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	73, 692
HpaII	CCGG	1 cut(s)	588
Hpy188I	TCNGA	6 cut(s)	60, 86, 151, 484, 658, 799
Hpy188III	TCNNGA	3 cut(s)	193, 605, 722
HpyAV	CCTTC	2 cut(s)	489, 772
HpyCH4V	TGCA	8 cut(s)	295, 323, 397, 501, 542, 572, 860, 878
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 578
HpyF3I	CTNAG	3 cut(s)	798, 819, 872
Hsp92II	CATG	8 cut(s)	38, 139, 348, 501, 527, 771, 839, 860
HspAI	GCGC	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	5 cut(s)	20, 183, 257, 277, 653
Lsp1109I	GCAGC	3 cut(s)	364, 526, 564
LweI	GCATC	2 cut(s)	364, 526
MaeI	CTAG	3 cut(s)	516, 605, 840
MaeIII	GTNAC	2 cut(s)	138, 842
MalI	GATC	5 cut(s)	22, 185, 259, 279, 655
MboI	GATC	5 cut(s)	20, 183, 257, 277, 653
MboII	GAAGA	1 cut(s)	252
MflI	RGATCY	1 cut(s)	257
MluCI	AATT	5 cut(s)	152, 460, 633, 685, 866
MlyI	GAGTC	1 cut(s)	686
MnlI	CCTC	6 cut(s)	90, 181, 233, 727, 754, 793
MseI	TTAA	3 cut(s)	68, 129, 423
MslI	CAYNNNNRTG	2 cut(s)	772, 840
MspA1I	CMGCKG	1 cut(s)	646
MspI	CCGG	1 cut(s)	588
MspR9I	CCNGG	2 cut(s)	363, 588
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	2 cut(s)	398, 578
NciI	CCSGG	1 cut(s)	588
NdeII	GATC	5 cut(s)	20, 183, 257, 277, 653
NlaIII	CATG	8 cut(s)	38, 139, 348, 501, 527, 771, 839, 860
NlaIV	GGNNCC	1 cut(s)	273
NmuCI	GTSAC	2 cut(s)	138, 842
NspI	RCATGY	2 cut(s)	501, 839
PfeI	GAWTC	1 cut(s)	73
PflFI	GACNNNGTC	1 cut(s)	454
PflMI	CCANNNNNTGG	1 cut(s)	416
PkrI	GCNGC	3 cut(s)	379, 541, 554
Ple19I	CGATCG	1 cut(s)	186
PleI	GAGTC	1 cut(s)	686
PpsI	GAGTC	1 cut(s)	686
PpuMI	RGGWCCY	1 cut(s)	272
PsiI	TTATAA	1 cut(s)	828
Psp5II	RGGWCCY	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	2 cut(s)	272, 359
PspPPI	RGGWCCY	1 cut(s)	272
PstI	CTGCAG	2 cut(s)	544, 574
PsuI	RGATCY	1 cut(s)	257
PsyI	GACNNNGTC	1 cut(s)	454
PvuI	CGATCG	1 cut(s)	186
RsaI	GTAC	4 cut(s)	300, 340, 601, 745
RsaNI	GTAC	4 cut(s)	299, 339, 600, 744
RseI	CAYNNNNRTG	2 cut(s)	772, 840
SaqAI	TTAA	3 cut(s)	68, 129, 423
SatI	GCNGC	3 cut(s)	378, 540, 553
Sau3AI	GATC	5 cut(s)	20, 183, 257, 277, 653
Sau96I	GGNCC	2 cut(s)	272, 359
ScaI	AGTACT	1 cut(s)	300
SchI	GAGTC	1 cut(s)	686
ScrFI	CCNGG	2 cut(s)	363, 588
SfaNI	GCATC	2 cut(s)	364, 526
SfcI	CTRYAG	3 cut(s)	540, 570, 641
SinI	GGWCC	2 cut(s)	272, 359
SmiMI	CAYNNNNRTG	2 cut(s)	772, 840
SmlI	CTYRAG	2 cut(s)	121, 302
SmoI	CTYRAG	2 cut(s)	121, 302
Sse9I	AATT	5 cut(s)	152, 460, 633, 685, 866
SsiI	CCGC	1 cut(s)	646
SspMI	CTAG	3 cut(s)	516, 605, 840
StyD4I	CCNGG	2 cut(s)	361, 586
StyI	CCWWGG	1 cut(s)	753
TaqI	TCGA	1 cut(s)	186
TaqII	GACCGA	1 cut(s)	70
TasI	AATT	5 cut(s)	152, 460, 633, 685, 866
TatI	WGTACW	2 cut(s)	298, 338
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	3 cut(s)	68, 129, 423
Tru9I	TTAA	3 cut(s)	68, 129, 423
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	2 cut(s)	138, 842
TseI	GCWGC	3 cut(s)	377, 539, 552
Tsp45I	GTSAC	2 cut(s)	138, 842
TspDTI	ATGAA	5 cut(s)	231, 333, 624, 698, 756
TspRI	CASTG	1 cut(s)	562
Tth111I	GACNNNGTC	1 cut(s)	454
Van91I	CCANNNNNTGG	1 cut(s)	416
VpaK11BI	GGWCC	2 cut(s)	272, 359
XbaI	TCTAGA	1 cut(s)	604
XceI	RCATGY	2 cut(s)	501, 839
XspI	CTAG	3 cut(s)	516, 605, 840
ZrmI	AGTACT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.