Rroxscaffold_1G00038550

Cytokinin riboside 5'-monophosphate phosphoribohydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006355
Physical Location & Seq
Reverse (-)
56006389 .. 56009692
3304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00038550.1

Sequence Viewer

Length: 741 bp
ATGGCGTTTTCGGTGTTGGGATCATTGGGTTCTCATGTTTTTGTAAGAAACTCTCATCAGAGACCTTTAACGATTCAATCGGTCAGAGAAAGAGGGAGGCGCAACATTAGTTTGAAGCTCTCAAGATCAAGGGTTATGTCAAGCAAGTCTGAATTAGTTGACTTTGATGAGAGAACAAGCCCGATTGAGATTGCAAACCTTTTGGAATGTACTTCATGGACGGGGGCTGGTCCAGGGCTAATGGATGCTGCTACTAAAGGTGCTTTGCAAGCAGGAAAATCAGTTGGTGGATTTAAGATTGGTAAAGAAGCTGGCGAATGGACAGCGTCAAATTACCATCCTTACCTACCTTCAGAAGTTTATCTAACATGCAGGTTTTTCTCTGCTAGAAAACATGGGCTGGTAGATGCTGCAGTAAGAAGCAGTAGTGCTGATAGGACCGCAGTTGTTGCTCTCCCTGGTGGGATTGGTACTCTAGATGAAATTTTTGAGATATTAGCACTAATTCAGCTACAACGGATTGGATCAGAGCTTCCAGTTCCATTCTTGTTGATGAACTATGACTCGTTCTACTCAAAGCTACTGGACTTTCTTGATGATTGTGAGGATTGGGGTACTCTCTCCAAGGGAGAGGTTTCATCTCTCTGGAAGGTTTGTGATAGCAACTCAGAGGCTGTATCTTATTTGTCAGATTTTTATAACCTACATGCTAGTGACAAAGCTAACCATGAAAAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lysine_decarbox

Protein Analysis

246

Amino Acids

27.05

Weight (kDa)

5.9

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lysine_decarbox PF03641 81 - 228 2.6e-24 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 699
Acc36I ACCTGC 1 cut(s) 363
AciI CCGC 1 cut(s) 441
AclWI GGATC 2 cut(s) 28, 532
AcsI RAATTY 1 cut(s) 483
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 3 cut(s) 211, 472, 616
AgsI TTSAA 2 cut(s) 77, 115
AjnI CCWGG 2 cut(s) 232, 457
AluBI AGCT 6 cut(s) 118, 311, 511, 532, 580, 722
AluI AGCT 6 cut(s) 118, 311, 511, 532, 580, 722
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 2 cut(s) 28, 532
AlwNI CAGNNNCTG 1 cut(s) 674
ApeKI GCWGC 2 cut(s) 248, 410
ApoI RAATTY 1 cut(s) 483
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 2 cut(s) 230, 438
AvaII GGWCC 2 cut(s) 230, 438
BbvI GCAGC 2 cut(s) 235, 397
BccI CCATC 1 cut(s) 345
BciT130I CCWGG 2 cut(s) 234, 459
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 3 cut(s) 387, 476, 711
BfmI CTRYAG 1 cut(s) 411
BfuAI ACCTGC 1 cut(s) 363
BisI GCNGC 2 cut(s) 249, 411
BlsI GCNGC 2 cut(s) 250, 412
Bme1390I CCNGG 2 cut(s) 234, 459
Bme18I GGWCC 2 cut(s) 230, 438
BmgT120I GGNCC 2 cut(s) 230, 438
BmrFI CCNGG 2 cut(s) 234, 459
BmsI GCATC 2 cut(s) 235, 397
BpuEI CTTGAG 1 cut(s) 106
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 3 cut(s) 233, 457, 624
Bse1I ACTGG 2 cut(s) 536, 588
BseBI CCWGG 2 cut(s) 234, 459
BseDI CCNNGG 3 cut(s) 233, 457, 624
BseGI GGATG 2 cut(s) 250, 337
BseMII CTCAG 1 cut(s) 681
BseNI ACTGG 2 cut(s) 536, 588
BseXI GCAGC 2 cut(s) 235, 397
BsmAI GTCTC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 55
Bsp143I GATC 3 cut(s) 20, 125, 524
BspACI CCGC 1 cut(s) 441
BspCNI CTCAG 1 cut(s) 680
BspMAI CTGCAG 1 cut(s) 415
BspMI ACCTGC 1 cut(s) 363
BspPI GGATC 2 cut(s) 28, 532
BspTNI GGTCTC 1 cut(s) 55
BsrI ACTGG 2 cut(s) 536, 588
BssECI CCNNGG 3 cut(s) 233, 457, 624
BssMI GATC 3 cut(s) 20, 125, 524
BssT1I CCWWGG 1 cut(s) 624
Bst2UI CCWGG 2 cut(s) 234, 459
BstAPI GCANNNNNTGC 1 cut(s) 449
BstC8I GCNNGC 2 cut(s) 270, 313
BstDEI CTNAG 1 cut(s) 667
BstF5I GGATG 2 cut(s) 250, 337
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 3 cut(s) 23, 128, 527
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 3 cut(s) 20, 125, 524
BstMWI GCNNNNNNNGC 2 cut(s) 269, 449
BstNI CCWGG 2 cut(s) 234, 459
BstNSI RCATGY 2 cut(s) 372, 710
BstSCI CCNGG 2 cut(s) 232, 457
BstSFI CTRYAG 1 cut(s) 411
BstV1I GCAGC 2 cut(s) 235, 397
BtsCI GGATG 2 cut(s) 250, 337
BveI ACCTGC 1 cut(s) 363
Cac8I GCNNGC 2 cut(s) 270, 313
CaiI CAGNNNCTG 1 cut(s) 674
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 2 cut(s) 230, 438
CseI GACGC 1 cut(s) 315
Csp6I GTAC 3 cut(s) 210, 471, 615
CviAII CATG 6 cut(s) 35, 216, 369, 395, 707, 728
CviQI GTAC 3 cut(s) 210, 471, 615
DdeI CTNAG 1 cut(s) 667
DpnI GATC 3 cut(s) 22, 127, 526
DpnII GATC 3 cut(s) 20, 125, 524
Eco130I CCWWGG 1 cut(s) 624
Eco31I GGTCTC 1 cut(s) 55
Eco47I GGWCC 2 cut(s) 230, 438
Eco57I CTGAAG 1 cut(s) 336
EcoRII CCWGG 2 cut(s) 232, 457
EcoT14I CCWWGG 1 cut(s) 624
ErhI CCWWGG 1 cut(s) 624
FaeI CATG 6 cut(s) 38, 219, 372, 398, 710, 731
FaiI YATR 9 cut(s) 36, 137, 217, 370, 396, 561, 699, 708, 729
FatI CATG 6 cut(s) 34, 215, 368, 394, 706, 727
Fnu4HI GCNGC 2 cut(s) 249, 411
FokI GGATG 2 cut(s) 257, 324
Fsp4HI GCNGC 2 cut(s) 249, 411
FspBI CTAG 3 cut(s) 387, 476, 711
GlaI GCGC 1 cut(s) 101
GluI GCNGC 2 cut(s) 249, 411
HgaI GACGC 1 cut(s) 315
HhaI GCGC 1 cut(s) 102
Hin1II CATG 6 cut(s) 38, 219, 372, 398, 710, 731
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 2 cut(s) 73, 563
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 7 cut(s) 60, 86, 151, 355, 529, 670, 691
Hpy188III TCNNGA 4 cut(s) 123, 476, 593, 646
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 2 cut(s) 360, 643
HpyCH4V TGCA 4 cut(s) 194, 268, 372, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 449
HpyF3I CTNAG 1 cut(s) 667
Hsp92II CATG 6 cut(s) 38, 219, 372, 398, 710, 731
HspAI GCGC 1 cut(s) 100
Kzo9I GATC 3 cut(s) 20, 125, 524
Lsp1109I GCAGC 2 cut(s) 235, 397
LweI GCATC 2 cut(s) 235, 397
MaeI CTAG 3 cut(s) 387, 476, 711
MaeIII GTNAC 1 cut(s) 713
MalI GATC 3 cut(s) 22, 127, 526
MboI GATC 3 cut(s) 20, 125, 524
MluCI AATT 4 cut(s) 152, 331, 483, 504
MlyI GAGTC 1 cut(s) 557
MnlI CCTC 5 cut(s) 86, 90, 598, 625, 664
MseI TTAA 2 cut(s) 68, 294
MslI CAYNNNNRTG 1 cut(s) 711
MspR9I CCNGG 2 cut(s) 234, 459
MvaI CCWGG 2 cut(s) 234, 459
MwoI GCNNNNNNNGC 2 cut(s) 269, 449
NdeII GATC 3 cut(s) 20, 125, 524
NlaIII CATG 6 cut(s) 38, 219, 372, 398, 710, 731
NmuCI GTSAC 1 cut(s) 713
NspI RCATGY 2 cut(s) 372, 710
PfeI GAWTC 1 cut(s) 73
PflFI GACNNNGTC 1 cut(s) 325
PkrI GCNGC 2 cut(s) 250, 412
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
PsiI TTATAA 1 cut(s) 699
Psp6I CCWGG 2 cut(s) 232, 457
PspGI CCWGG 2 cut(s) 232, 457
PspPI GGNCC 2 cut(s) 230, 438
PstI CTGCAG 1 cut(s) 415
PstNI CAGNNNCTG 1 cut(s) 674
PsyI GACNNNGTC 1 cut(s) 325
RsaI GTAC 3 cut(s) 211, 472, 616
RsaNI GTAC 3 cut(s) 210, 471, 615
RseI CAYNNNNRTG 1 cut(s) 711
SaqAI TTAA 2 cut(s) 68, 294
SatI GCNGC 2 cut(s) 249, 411
Sau3AI GATC 3 cut(s) 20, 125, 524
Sau96I GGNCC 2 cut(s) 230, 438
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 2 cut(s) 234, 459
SfaNI GCATC 2 cut(s) 235, 397
SfcI CTRYAG 1 cut(s) 411
SinI GGWCC 2 cut(s) 230, 438
SmiMI CAYNNNNRTG 1 cut(s) 711
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
Sse9I AATT 4 cut(s) 152, 331, 483, 504
SsiI CCGC 1 cut(s) 441
SspMI CTAG 3 cut(s) 387, 476, 711
StyD4I CCNGG 2 cut(s) 232, 457
StyI CCWWGG 1 cut(s) 624
TaqII GACCGA 1 cut(s) 70
TasI AATT 4 cut(s) 152, 331, 483, 504
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 1 cut(s) 73
Tru1I TTAA 2 cut(s) 68, 294
Tru9I TTAA 2 cut(s) 68, 294
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 2 cut(s) 248, 410
Tsp45I GTSAC 1 cut(s) 713
TspDTI ATGAA 4 cut(s) 204, 495, 569, 627
TspGWI ACGGA 1 cut(s) 532
Tth111I GACNNNGTC 1 cut(s) 325
VpaK11BI GGWCC 2 cut(s) 230, 438
XapI RAATTY 1 cut(s) 483
XbaI TCTAGA 1 cut(s) 475
XceI RCATGY 2 cut(s) 372, 710
XspI CTAG 3 cut(s) 387, 476, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.