Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0006355

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG298000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCCCACTCCGCCAGTAGCTCAGTTCTCAACGCGTTTAGAAGATTTGAGGATGGCGTTTTCGGTGTTGGGACCATTGGGTTCTCGTGTTTTTGTAAGAACTTCTCATCAGAGACCTTTAACGATTCAATCGGTCAGAGAAAGAGGGAGGCGCAACATTAGTTTCAAGCTCTCAAGGTCAAGGGTTATGTCAATCAAGTCTGAATTAGTTGATTTTGATGAGAGAACAAGCCCGATTGAGGTCAGGAAAGAGATAGAACGATGCTATGAACTGATACACAGACTTGGGAGAGGGGTCGTGTATTTGGGATCTTCAAGGATGGGACCTGATCATTCACATTATTTGCAAGTACTTGAGTTGGGTAGAGAGATTGCAAACCTTTTGGAATGTACTTCATGGACGGGGGCTGGTCCAGGGCTAATGGATGCTGCTACTAAAGGTGCTTTGCAAGCAGGAAAATCAGTTGGTGGATTTAAGATTGGTAAAGAAGCTGGCGAATGGACAGCGTCAAATTACCATCCTTACCTGCCTTCAGAAGTTTATCTAACATGCAGGTTTTTCTCTGCTAGAAAACATGGGCTGGTAGATGCTGCAGTAAGAAGCAGTAGTGCTGATAGGACTGCAGTTGTTGCTCTCCCTGGTGGGATTGGTACTCTAGATGAAATTTTTGAGATATTAGCACTAATTCAGCTACAACGGATTGGATCAGAGCTTCCAGTTCCATTCTTGTTGATGAACTATGACTCGTTCTACTCAAAGCTACTGGACTTTCTTGATGATTGTGAGGATTGGGGTACTCTCTCCAAGGGCGAGGTTTCATCTCTGTGGAAGGTTTGTGATAGCAACTCAGAGGCTCTATCTTATTTGTCAGATTTTTATAACCTACATGCTAGTGACAATGGTGACCATGAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lysine_decarbox

Protein Analysis

305

Amino Acids

33.96

Weight (kDa)

6.26

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LDcluster4	PF18306	102 - 223	2.5e-06	SLOG cluster4 family
Lysine_decarbox	PF03641	141 - 288	5.2e-24	Possible lysine decarboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50575
fragaria_vesca	FvH4_3g23860 FvH4_3g23860 FvH4_3g23860 FvH4_3g23860
malus_domestica	MD11G1206400.v1.1
prunus_persica	Prupe.4G230500_v2.0.a1
pyrus_communis	pycom11g17950
rosa_chinensis	RchiOBHm_Chr5g0042111 RchiOBHm_Chr5g0042181
rosa_laevigata	RLG00000034110
rosa_multiflora	Rmu_sc0001715.1_g000037 Rmu_sc0008382.1_g000017
rosa_roxburghii	Rroxscaffold_1G00038550
rosa_rugosa	Rorug05G0197900 Rorug05G0198000 Rorug05G0198400 Rorug05G0198500 Rorug05G0198600
rosa_samantha	Rh4CG186500 Rh5AG283200 Rh5BG288800 Rh5BG289100 Rh5DG298000 Rh7DG390700
rosa_wichuraiana	Rw0G001460 Rw5G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	879
Acc36I	ACCTGC	2 cut(s)	534, 543
AccII	CGCG	1 cut(s)	34
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	2 cut(s)	316, 712
AcsI	RAATTY	1 cut(s)	663
AcuI	CTGAAG	1 cut(s)	516
AfaI	GTAC	4 cut(s)	351, 391, 652, 796
AfiI	CCNNNNNNNGG	1 cut(s)	238
AflIII	ACRYGT	1 cut(s)	32
AgsI	TTSAA	3 cut(s)	128, 166, 315
AjnI	CCWGG	2 cut(s)	412, 637
AluBI	AGCT	6 cut(s)	20, 169, 491, 691, 712, 760
AluI	AGCT	6 cut(s)	20, 169, 491, 691, 712, 760
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	2 cut(s)	316, 712
ApeKI	GCWGC	2 cut(s)	428, 590
ApoI	RAATTY	1 cut(s)	663
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	3 cut(s)	71, 323, 410
AsuHPI	GGTGA	1 cut(s)	914
AvaII	GGWCC	3 cut(s)	71, 323, 410
BauI	CACGAG	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	415, 577
BccI	CCATC	3 cut(s)	46, 313, 525
BciT130I	CCWGG	2 cut(s)	414, 639
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	3 cut(s)	567, 656, 891
BfmI	CTRYAG	2 cut(s)	591, 621
BfuAI	ACCTGC	2 cut(s)	534, 543
BisI	GCNGC	2 cut(s)	429, 591
BlsI	GCNGC	2 cut(s)	430, 592
BmcAI	AGTACT	1 cut(s)	351
Bme1390I	CCNGG	2 cut(s)	414, 639
Bme18I	GGWCC	3 cut(s)	71, 323, 410
BmgT120I	GGNCC	3 cut(s)	71, 323, 410
BmiI	GGNNCC	2 cut(s)	72, 324
BmrFI	CCNGG	2 cut(s)	414, 639
BmsI	GCATC	3 cut(s)	251, 415, 577
BpuEI	CTTGAG	2 cut(s)	157, 374
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	3 cut(s)	413, 637, 804
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	3 cut(s)	14, 716, 768
BseBI	CCWGG	2 cut(s)	414, 639
BseDI	CCNNGG	3 cut(s)	413, 637, 804
BseGI	GGATG	4 cut(s)	57, 324, 430, 517
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	35, 861
BseNI	ACTGG	3 cut(s)	14, 716, 768
BseXI	GCAGC	2 cut(s)	415, 577
Bsh1236I	CGCG	1 cut(s)	34
BslFI	GGGAC	2 cut(s)	84, 336
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	106
BsmFI	GGGAC	2 cut(s)	84, 336
Bso31I	GGTCTC	1 cut(s)	106
Bsp143I	GATC	3 cut(s)	308, 328, 704
BspACI	CCGC	1 cut(s)	11
BspCNI	CTCAG	2 cut(s)	34, 860
BspFNI	CGCG	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	72, 324
BspMAI	CTGCAG	2 cut(s)	595, 625
BspMI	ACCTGC	2 cut(s)	534, 543
BspPI	GGATC	2 cut(s)	316, 712
BspTNI	GGTCTC	1 cut(s)	106
BsrI	ACTGG	3 cut(s)	14, 716, 768
BssECI	CCNNGG	3 cut(s)	413, 637, 804
BssMI	GATC	3 cut(s)	308, 328, 704
BssSI	CACGAG	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	804
Bst2BI	CACGAG	1 cut(s)	84
Bst2UI	CCWGG	2 cut(s)	414, 639
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstC8I	GCNNGC	2 cut(s)	450, 493
BstDEI	CTNAG	2 cut(s)	21, 847
BstEII	GGTNACC	1 cut(s)	902
BstF5I	GGATG	4 cut(s)	57, 324, 430, 517
BstFNI	CGCG	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	3 cut(s)	311, 331, 707
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	3 cut(s)	308, 328, 704
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 449, 629
BstNI	CCWGG	2 cut(s)	414, 639
BstNSI	RCATGY	2 cut(s)	552, 890
BstPI	GGTNACC	1 cut(s)	902
BstSCI	CCNGG	2 cut(s)	412, 637
BstSFI	CTRYAG	2 cut(s)	591, 621
BstUI	CGCG	1 cut(s)	34
BstV1I	GCAGC	2 cut(s)	415, 577
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BtsCI	GGATG	4 cut(s)	57, 324, 430, 517
BveI	ACCTGC	2 cut(s)	534, 543
Cac8I	GCNNGC	2 cut(s)	450, 493
CfoI	GCGC	1 cut(s)	153
Cfr13I	GGNCC	3 cut(s)	71, 323, 410
CseI	GACGC	1 cut(s)	495
Csp6I	GTAC	4 cut(s)	350, 390, 651, 795
CviAII	CATG	5 cut(s)	396, 549, 575, 887, 908
CviQI	GTAC	4 cut(s)	350, 390, 651, 795
DdeI	CTNAG	2 cut(s)	21, 847
DpnI	GATC	3 cut(s)	310, 330, 706
DpnII	GATC	3 cut(s)	308, 328, 704
Eco130I	CCWWGG	1 cut(s)	804
Eco31I	GGTCTC	1 cut(s)	106
Eco47I	GGWCC	3 cut(s)	71, 323, 410
Eco57I	CTGAAG	1 cut(s)	516
Eco91I	GGTNACC	1 cut(s)	902
EcoO109I	RGGNCCY	1 cut(s)	323
EcoO65I	GGTNACC	1 cut(s)	902
EcoRII	CCWGG	2 cut(s)	412, 637
EcoT14I	CCWWGG	1 cut(s)	804
ErhI	CCWWGG	1 cut(s)	804
FaeI	CATG	5 cut(s)	399, 552, 578, 890, 911
FaiI	YATR	9 cut(s)	188, 267, 397, 550, 576, 741, 879, 888, 909
FaqI	GGGAC	2 cut(s)	84, 336
FatI	CATG	5 cut(s)	395, 548, 574, 886, 907
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	429, 591
FokI	GGATG	4 cut(s)	64, 331, 437, 504
Fsp4HI	GCNGC	2 cut(s)	429, 591
FspBI	CTAG	3 cut(s)	567, 656, 891
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	2 cut(s)	429, 591
HgaI	GACGC	1 cut(s)	495
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	5 cut(s)	399, 552, 578, 890, 911
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HinfI	GANTC	2 cut(s)	124, 743
HphI	GGTGA	1 cut(s)	914
Hpy188I	TCNGA	7 cut(s)	111, 137, 202, 535, 709, 850, 871
Hpy188III	TCNNGA	3 cut(s)	244, 656, 773
HpyAV	CCTTC	2 cut(s)	540, 823
HpyCH4V	TGCA	6 cut(s)	346, 374, 448, 552, 593, 623
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 449, 629
HpyF3I	CTNAG	2 cut(s)	21, 847
Hsp92II	CATG	5 cut(s)	399, 552, 578, 890, 911
HspAI	GCGC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	308, 328, 704
Lsp1109I	GCAGC	2 cut(s)	415, 577
LweI	GCATC	3 cut(s)	251, 415, 577
MaeI	CTAG	3 cut(s)	567, 656, 891
MaeIII	GTNAC	2 cut(s)	893, 902
MalI	GATC	3 cut(s)	310, 330, 706
MboI	GATC	3 cut(s)	308, 328, 704
MboII	GAAGA	2 cut(s)	53, 303
MflI	RGATCY	1 cut(s)	308
MluCI	AATT	4 cut(s)	203, 511, 663, 684
MluI	ACGCGT	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	737
MnlI	CCTC	8 cut(s)	42, 137, 141, 232, 284, 778, 805, 844
MseI	TTAA	2 cut(s)	119, 474
MslI	CAYNNNNRTG	2 cut(s)	823, 891
MspR9I	CCNGG	2 cut(s)	414, 639
MvaI	CCWGG	2 cut(s)	414, 639
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	3 cut(s)	10, 449, 629
NdeII	GATC	3 cut(s)	308, 328, 704
NlaIII	CATG	5 cut(s)	399, 552, 578, 890, 911
NlaIV	GGNNCC	2 cut(s)	72, 324
NmuCI	GTSAC	2 cut(s)	893, 902
NspI	RCATGY	2 cut(s)	552, 890
PfeI	GAWTC	1 cut(s)	124
PflFI	GACNNNGTC	1 cut(s)	505
PkrI	GCNGC	2 cut(s)	430, 592
PleI	GAGTC	1 cut(s)	737
PpsI	GAGTC	1 cut(s)	737
PpuMI	RGGWCCY	1 cut(s)	323
PsiI	TTATAA	1 cut(s)	879
Psp5II	RGGWCCY	1 cut(s)	323
Psp6I	CCWGG	2 cut(s)	412, 637
PspEI	GGTNACC	1 cut(s)	902
PspGI	CCWGG	2 cut(s)	412, 637
PspN4I	GGNNCC	2 cut(s)	72, 324
PspPI	GGNCC	3 cut(s)	71, 323, 410
PspPPI	RGGWCCY	1 cut(s)	323
PstI	CTGCAG	2 cut(s)	595, 625
PsuI	RGATCY	1 cut(s)	308
PsyI	GACNNNGTC	1 cut(s)	505
RsaI	GTAC	4 cut(s)	351, 391, 652, 796
RsaNI	GTAC	4 cut(s)	350, 390, 651, 795
RseI	CAYNNNNRTG	2 cut(s)	823, 891
SaqAI	TTAA	2 cut(s)	119, 474
SatI	GCNGC	2 cut(s)	429, 591
Sau3AI	GATC	3 cut(s)	308, 328, 704
Sau96I	GGNCC	3 cut(s)	71, 323, 410
ScaI	AGTACT	1 cut(s)	351
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	2 cut(s)	414, 639
SfaNI	GCATC	3 cut(s)	251, 415, 577
SfcI	CTRYAG	2 cut(s)	591, 621
SinI	GGWCC	3 cut(s)	71, 323, 410
SmiMI	CAYNNNNRTG	2 cut(s)	823, 891
SmlI	CTYRAG	2 cut(s)	172, 353
SmoI	CTYRAG	2 cut(s)	172, 353
Sse9I	AATT	4 cut(s)	203, 511, 663, 684
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	3 cut(s)	567, 656, 891
StyD4I	CCNGG	2 cut(s)	412, 637
StyI	CCWWGG	1 cut(s)	804
TaqII	GACCGA	1 cut(s)	121
TasI	AATT	4 cut(s)	203, 511, 663, 684
TatI	WGTACW	2 cut(s)	349, 389
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	2 cut(s)	119, 474
Tru9I	TTAA	2 cut(s)	119, 474
TseFI	GTSAC	2 cut(s)	893, 902
TseI	GCWGC	2 cut(s)	428, 590
Tsp45I	GTSAC	2 cut(s)	893, 902
TspDTI	ATGAA	5 cut(s)	282, 384, 675, 749, 807
TspGWI	ACGGA	1 cut(s)	712
Tth111I	GACNNNGTC	1 cut(s)	505
VpaK11BI	GGWCC	3 cut(s)	71, 323, 410
XapI	RAATTY	1 cut(s)	663
XbaI	TCTAGA	1 cut(s)	655
XceI	RCATGY	2 cut(s)	552, 890
XspI	CTAG	3 cut(s)	567, 656, 891
ZrmI	AGTACT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.