Prupe.4G230500_v2.0.a1

Cytokinin riboside 5'-monophosphate phosphoribohydrolase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
14766763 .. 14768905
2143 bp
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UTR
Exon/CDS
Intron
Prupe.4G230500.1

Sequence Viewer

Length: 912 bp
ATGGGGTTTTCGGTGTTGGATTCAATTTCAATGGGGTCTCATGTATTAGTAAAAATTTGTCATGAAAGGACTTTGAAGATTCAATCTTTCTGGGCAAGAGAGAGACCCACCATTAGTTTCAAGCTCTCAAGGTCGAGGCCCTACCCACACCCAGGAAGACTTATATCATGCAAGTCTGAATTAGTTGATTTTGATGAGAGAACAAGCCCAAATGAGGTCAGGAAAGAGATAAAACGATGTTATGAACTGATACACAGACTTGGGAGAGGAGTCGTGTATTTGGGTTCTTCAAGGATGGGACCTGATCATTCACATTATCTGCAAGCACTAGAGTTGGGTAGAGAGATTGCAAACCTTTTGGAATGTACTTCATGGACGGGTGCTGGTCCAGGGCTAATGGATGCTGCTACTAAAGGTGCTTTGCAAGCAGGAAAACCAGTTGGTGGATTTAAGATTGGTAAAGAGGCTGGCGAATGGACAGCATCAAATTTTCATCCTTACCTACCATCGGAAGTGTTTTTCTCTGCTAGGAAGCATGGGTTGGTTGATGCTGCAGTTAGAAGCTGCAGTTCTGATAGGACTGCTGTCGTTGCTCTACCTGGTGGGATTGGTACTCTAGATGAAATTTTTGAGATTTTAGCATTAATTCAGCTAGAAAGGATCGGGTCAGAGCTTCCAGTTCCATTCTTGTTGATGAACTATGACTCATTCTATTCAAAGCTTCTAGGCTTCCTTGATGATTGTGAGGACTGGGGTACCCTCTCCAAGGGAGAGATCACATCTCTGTGGAAGGTTTGTGATAGTAACTCAGAGGCTTTGGCTTATTTGGCAGATTTTTACAAACTACCTCCTCCTACTGACAAAGCCCAGCATGACAACGAATTGCAAAGCGCGAGTGGAACGTTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

304

Amino Acids

33.49

Weight (kDa)

6.16

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 755
AccB1I GGYRCC 1 cut(s) 755
AccB7I CCANNNNNTGG 1 cut(s) 443
AccII CGCG 1 cut(s) 893
AclI AACGTT 1 cut(s) 902
AclWI GGATC 1 cut(s) 668
AcsI RAATTY 3 cut(s) 54, 487, 624
AfaI GTAC 3 cut(s) 367, 613, 757
AfiI CCNNNNNNNGG 5 cut(s) 152, 214, 443, 508, 766
AgsI TTSAA 7 cut(s) 24, 30, 76, 83, 121, 291, 717
AjnI CCWGG 3 cut(s) 151, 388, 598
AjuI GAANNNNNNNTTGG 2 cut(s) 524, 556
AluBI AGCT 5 cut(s) 124, 564, 652, 673, 721
AluI AGCT 5 cut(s) 124, 564, 652, 673, 721
Alw26I GTCTC 2 cut(s) 42, 97
AlwI GGATC 1 cut(s) 668
AoxI GGCC 1 cut(s) 137
ApeKI GCWGC 3 cut(s) 404, 551, 564
ApoI RAATTY 3 cut(s) 54, 487, 624
AseI ATTAAT 1 cut(s) 644
Asp700I GAANNNNTTC 1 cut(s) 904
Asp718I GGTACC 1 cut(s) 755
AspLEI GCGC 1 cut(s) 893
AspS9I GGNCC 3 cut(s) 138, 299, 386
AvaII GGWCC 2 cut(s) 299, 386
BaeI ACNNNNGTAYC 2 cut(s) 739, 772
BanI GGYRCC 1 cut(s) 755
BbsI GAAGAC 1 cut(s) 163
BbvI GCAGC 3 cut(s) 391, 538, 551
BccI CCATC 2 cut(s) 289, 514
BciT130I CCWGG 3 cut(s) 153, 390, 600
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 2 cut(s) 42, 97
BfaI CTAG 5 cut(s) 329, 528, 617, 653, 725
BfmI CTRYAG 2 cut(s) 552, 565
BisI GCNGC 3 cut(s) 405, 552, 565
BlsI GCNGC 3 cut(s) 406, 553, 566
Bme1390I CCNGG 3 cut(s) 153, 390, 600
Bme18I GGWCC 2 cut(s) 299, 386
BmgT120I GGNCC 3 cut(s) 138, 299, 386
BmiI GGNNCC 2 cut(s) 300, 757
BmrFI CCNGG 3 cut(s) 153, 390, 600
BmrI ACTGGG 1 cut(s) 760
BmsI GCATC 3 cut(s) 391, 491, 538
BmuI ACTGGG 1 cut(s) 760
BoxI GACNNNNGTC 1 cut(s) 584
BpiI GAAGAC 1 cut(s) 163
BpuEI CTTGAG 1 cut(s) 112
BsaI GGTCTC 2 cut(s) 42, 97
BsaJI CCNNGG 3 cut(s) 151, 389, 765
Bsc4I CCNNNNNNNGG 5 cut(s) 152, 214, 443, 508, 766
Bse1I ACTGG 3 cut(s) 437, 677, 755
BseBI CCWGG 3 cut(s) 153, 390, 600
BseDI CCNNGG 3 cut(s) 151, 389, 765
BseGI GGATG 3 cut(s) 300, 406, 493
BseLI CCNNNNNNNGG 5 cut(s) 152, 214, 443, 508, 766
BseMII CTCAG 1 cut(s) 822
BseNI ACTGG 3 cut(s) 437, 677, 755
BseRI GAGGAG 2 cut(s) 282, 840
BseXI GCAGC 3 cut(s) 391, 538, 551
BseYI CCCAGC 1 cut(s) 867
Bsh1236I CGCG 1 cut(s) 893
BshFI GGCC 1 cut(s) 139
BshNI GGYRCC 1 cut(s) 755
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 5 cut(s) 152, 214, 443, 508, 766
BsmAI GTCTC 2 cut(s) 42, 97
BsmFI GGGAC 1 cut(s) 312
BsnI GGCC 1 cut(s) 139
Bso31I GGTCTC 2 cut(s) 42, 97
Bsp143I GATC 3 cut(s) 304, 660, 774
BspANI GGCC 1 cut(s) 139
BspCNI CTCAG 1 cut(s) 821
BspFNI CGCG 1 cut(s) 893
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 300, 757
BspMAI CTGCAG 2 cut(s) 556, 569
BspPI GGATC 1 cut(s) 668
BspT107I GGYRCC 1 cut(s) 755
BspTNI GGTCTC 2 cut(s) 42, 97
BsrI ACTGG 3 cut(s) 437, 677, 755
BssECI CCNNGG 3 cut(s) 151, 389, 765
BssMI GATC 3 cut(s) 304, 660, 774
BssT1I CCWWGG 1 cut(s) 765
Bst2UI CCWGG 3 cut(s) 153, 390, 600
BstC8I GCNNGC 3 cut(s) 324, 426, 469
BstDEI CTNAG 1 cut(s) 808
BstENI CCTNNNNNAGG 1 cut(s) 764
BstF5I GGATG 3 cut(s) 300, 406, 493
BstFNI CGCG 1 cut(s) 893
BstHHI GCGC 1 cut(s) 893
BstKTI GATC 3 cut(s) 307, 663, 777
BstMAI GTCTC 2 cut(s) 42, 97
BstMBI GATC 3 cut(s) 304, 660, 774
BstMWI GCNNNNNNNGC 3 cut(s) 425, 590, 827
BstNI CCWGG 3 cut(s) 153, 390, 600
BstPAI GACNNNNGTC 1 cut(s) 584
BstSCI CCNGG 3 cut(s) 151, 388, 598
BstSFI CTRYAG 2 cut(s) 552, 565
BstUI CGCG 1 cut(s) 893
BstV1I GCAGC 3 cut(s) 391, 538, 551
BstV2I GAAGAC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 139
BtsCI GGATG 3 cut(s) 300, 406, 493
Cac8I GCNNGC 3 cut(s) 324, 426, 469
CciI TCATGA 1 cut(s) 61
CfoI GCGC 1 cut(s) 893
Cfr13I GGNCC 3 cut(s) 138, 299, 386
CsiI ACCWGGT 1 cut(s) 598
Csp6I GTAC 3 cut(s) 366, 612, 756
CviAII CATG 6 cut(s) 41, 62, 168, 372, 536, 872
CviQI GTAC 3 cut(s) 366, 612, 756
DdeI CTNAG 1 cut(s) 808
DpnI GATC 3 cut(s) 306, 662, 776
DpnII GATC 3 cut(s) 304, 660, 774
Eco130I CCWWGG 1 cut(s) 765
Eco31I GGTCTC 2 cut(s) 42, 97
Eco47I GGWCC 2 cut(s) 299, 386
EcoNI CCTNNNNNAGG 1 cut(s) 764
EcoO109I RGGNCCY 2 cut(s) 138, 299
EcoRII CCWGG 3 cut(s) 151, 388, 598
EcoT14I CCWWGG 1 cut(s) 765
ErhI CCWWGG 1 cut(s) 765
FaeI CATG 6 cut(s) 44, 65, 171, 375, 539, 875
FaiI YATR 9 cut(s) 42, 63, 164, 169, 243, 373, 537, 702, 873
FaqI GGGAC 1 cut(s) 312
FatI CATG 6 cut(s) 40, 61, 167, 371, 535, 871
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 3 cut(s) 405, 552, 565
FokI GGATG 3 cut(s) 307, 413, 480
Fsp4HI GCNGC 3 cut(s) 405, 552, 565
FspBI CTAG 5 cut(s) 329, 528, 617, 653, 725
GlaI GCGC 1 cut(s) 892
GluI GCNGC 3 cut(s) 405, 552, 565
GsaI CCCAGC 1 cut(s) 871
HaeIII GGCC 1 cut(s) 139
HhaI GCGC 1 cut(s) 893
Hin1II CATG 6 cut(s) 44, 65, 171, 375, 539, 875
Hin6I GCGC 1 cut(s) 891
HinP1I GCGC 1 cut(s) 891
HindIII AAGCTT 1 cut(s) 719
HinfI GANTC 4 cut(s) 20, 79, 270, 704
Hpy188I TCNGA 5 cut(s) 178, 511, 574, 670, 811
Hpy188III TCNNGA 3 cut(s) 62, 220, 617
HpyAV CCTTC 1 cut(s) 784
HpyCH4IV ACGT 1 cut(s) 902
HpyCH4V TGCA 7 cut(s) 171, 322, 350, 424, 554, 567, 886
HpyF10VI GCNNNNNNNGC 3 cut(s) 425, 590, 827
HpyF3I CTNAG 1 cut(s) 808
HpySE526I ACGT 1 cut(s) 902
Hsp92II CATG 6 cut(s) 44, 65, 171, 375, 539, 875
HspAI GCGC 1 cut(s) 891
KpnI GGTACC 1 cut(s) 759
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 3 cut(s) 304, 660, 774
Lsp1109I GCAGC 3 cut(s) 391, 538, 551
LweI GCATC 3 cut(s) 391, 491, 538
MabI ACCWGGT 1 cut(s) 598
MaeI CTAG 5 cut(s) 329, 528, 617, 653, 725
MaeII ACGT 1 cut(s) 902
MaeIII GTNAC 1 cut(s) 803
MalI GATC 3 cut(s) 306, 662, 776
MboI GATC 3 cut(s) 304, 660, 774
MboII GAAGA 3 cut(s) 88, 168, 279
MluCI AATT 7 cut(s) 24, 54, 179, 487, 624, 645, 881
MlyI GAGTC 2 cut(s) 279, 698
MnlI CCTC 9 cut(s) 129, 208, 260, 457, 739, 770, 805, 858, 861
MroXI GAANNNNTTC 1 cut(s) 904
MseI TTAA 3 cut(s) 450, 644, 910
MslI CAYNNNNRTG 1 cut(s) 784
MspR9I CCNGG 3 cut(s) 153, 390, 600
MvaI CCWGG 3 cut(s) 153, 390, 600
MvnI CGCG 1 cut(s) 893
MwoI GCNNNNNNNGC 3 cut(s) 425, 590, 827
NdeII GATC 3 cut(s) 304, 660, 774
NlaIII CATG 6 cut(s) 44, 65, 171, 375, 539, 875
NlaIV GGNNCC 2 cut(s) 300, 757
PagI TCATGA 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 904
PfeI GAWTC 2 cut(s) 20, 79
PflMI CCANNNNNTGG 1 cut(s) 443
PkrI GCNGC 3 cut(s) 406, 553, 566
PleI GAGTC 2 cut(s) 278, 698
PpsI GAGTC 2 cut(s) 278, 698
PpuMI RGGWCCY 1 cut(s) 299
PshAI GACNNNNGTC 1 cut(s) 584
PshBI ATTAAT 1 cut(s) 644
Psp1406I AACGTT 1 cut(s) 902
Psp5II RGGWCCY 1 cut(s) 299
Psp6I CCWGG 3 cut(s) 151, 388, 598
PspFI CCCAGC 1 cut(s) 867
PspGI CCWGG 3 cut(s) 151, 388, 598
PspN4I GGNNCC 2 cut(s) 300, 757
PspPI GGNCC 3 cut(s) 138, 299, 386
PspPPI RGGWCCY 1 cut(s) 299
PstI CTGCAG 2 cut(s) 556, 569
RsaI GTAC 3 cut(s) 367, 613, 757
RsaNI GTAC 3 cut(s) 366, 612, 756
RseI CAYNNNNRTG 1 cut(s) 784
SaqAI TTAA 3 cut(s) 450, 644, 910
SatI GCNGC 3 cut(s) 405, 552, 565
Sau3AI GATC 3 cut(s) 304, 660, 774
Sau96I GGNCC 3 cut(s) 138, 299, 386
SchI GAGTC 2 cut(s) 279, 698
ScrFI CCNGG 3 cut(s) 153, 390, 600
SexAI ACCWGGT 1 cut(s) 598
SfaNI GCATC 3 cut(s) 391, 491, 538
SfcI CTRYAG 2 cut(s) 552, 565
SinI GGWCC 2 cut(s) 299, 386
SmiMI CAYNNNNRTG 1 cut(s) 784
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 7 cut(s) 24, 54, 179, 487, 624, 645, 881
SspMI CTAG 5 cut(s) 329, 528, 617, 653, 725
StyD4I CCNGG 3 cut(s) 151, 388, 598
StyI CCWWGG 1 cut(s) 765
TaiI ACGT 1 cut(s) 905
TaqI TCGA 1 cut(s) 134
TasI AATT 7 cut(s) 24, 54, 179, 487, 624, 645, 881
TatI WGTACW 1 cut(s) 365
TfiI GAWTC 2 cut(s) 20, 79
Tru1I TTAA 3 cut(s) 450, 644, 910
Tru9I TTAA 3 cut(s) 450, 644, 910
TseI GCWGC 3 cut(s) 404, 551, 564
TspDTI ATGAA 6 cut(s) 78, 258, 360, 482, 636, 710
Van91I CCANNNNNTGG 1 cut(s) 443
VpaK11BI GGWCC 2 cut(s) 299, 386
VspI ATTAAT 1 cut(s) 644
XagI CCTNNNNNAGG 1 cut(s) 764
XapI RAATTY 3 cut(s) 54, 487, 624
XbaI TCTAGA 1 cut(s) 616
XmnI GAANNNNTTC 1 cut(s) 904
XspI CTAG 5 cut(s) 329, 528, 617, 653, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.