Rmu_sc0008382.1_g000017

Cytokinin riboside 5'-monophosphate phosphoribohydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008382.1
OG0006355
Physical Location & Seq
Reverse (-)
62477 .. 66581
4105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008382.1_g000017.1.cds

Sequence Viewer

Length: 372 bp
atgggggctggtccagggctaatggatgctgctactaaaggtgctttgcaagcaggaaaatcagttggtggatttaagattggtaaagaagctggcgaatggacagcgtcaaattcccatccttacctgccttcagaagtttatctaacatgcagtcggtggcgtcgccatagatatttgcgacggcaaggggtttccgttgctaataagcttgcgatggtgcatttgccgtcgcaaataccaatggcgacgccctcaccaacatcggcgcaattgccgtcgccattgatctttcgcgacggcaatttcactttccttgacggcacatcgccatggcgatttcaatttttttttgtagtgttcatggggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lysine_decarbox

Protein Analysis

123

Amino Acids

13.49

Weight (kDa)

10.21

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 135
AccII CGCG 1 cut(s) 297
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 1 cut(s) 117
AcyI GRCGYC 2 cut(s) 163, 251
AgsI TTSAA 1 cut(s) 344
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 2 cut(s) 92, 211
AluI AGCT 2 cut(s) 92, 211
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 112
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 249
AvaII GGWCC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 126, 211
BceAI ACGGC 5 cut(s) 200, 214, 262, 316, 337
BciT130I CCWGG 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 135
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 15
Bme18I GGWCC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 15
BmsI GCATC 1 cut(s) 16
BsaHI GRCGYC 2 cut(s) 163, 251
BsaJI CCNNGG 2 cut(s) 14, 332
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 2 cut(s) 14, 332
BseGI GGATG 2 cut(s) 31, 118
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 297
Bsp143I GATC 1 cut(s) 288
Bsp19I CCATGG 1 cut(s) 332
Bsp68I TCGCGA 1 cut(s) 297
BspFNI CGCG 1 cut(s) 297
BspMI ACCTGC 1 cut(s) 135
BssECI CCNNGG 2 cut(s) 14, 332
BssMI GATC 1 cut(s) 288
BssNI GRCGYC 2 cut(s) 163, 251
BssT1I CCWWGG 1 cut(s) 332
Bst2UI CCWGG 1 cut(s) 15
BstACI GRCGYC 2 cut(s) 163, 251
BstC8I GCNNGC 3 cut(s) 51, 94, 213
BstDSI CCRYGG 1 cut(s) 332
BstF5I GGATG 2 cut(s) 31, 118
BstFNI CGCG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 1 cut(s) 291
BstMBI GATC 1 cut(s) 288
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 1 cut(s) 15
BstNSI RCATGY 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 13
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 16
BtgI CCRYGG 1 cut(s) 332
BtgZI GCGATG 2 cut(s) 230, 312
BtsCI GGATG 2 cut(s) 31, 118
BtuMI TCGCGA 1 cut(s) 297
BveI ACCTGC 1 cut(s) 135
Cac8I GCNNGC 3 cut(s) 51, 94, 213
CfoI GCGC 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 11
CseI GACGC 3 cut(s) 96, 152, 259
CviAII CATG 3 cut(s) 150, 333, 364
CviJI RGCY 4 cut(s) 8, 19, 92, 211
CviKI_1 RGCY 4 cut(s) 8, 19, 92, 211
DpnI GATC 1 cut(s) 290
DpnII GATC 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 332
FaeI CATG 3 cut(s) 153, 336, 367
FaiI YATR 4 cut(s) 151, 171, 334, 365
FatI CATG 3 cut(s) 149, 332, 363
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 2 cut(s) 38, 105
Fsp4HI GCNGC 1 cut(s) 30
GlaI GCGC 1 cut(s) 270
GluI GCNGC 1 cut(s) 30
HgaI GACGC 3 cut(s) 96, 152, 259
HhaI GCGC 1 cut(s) 271
Hin1I GRCGYC 2 cut(s) 163, 251
Hin1II CATG 3 cut(s) 153, 336, 367
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HindIII AAGCTT 1 cut(s) 209
HphI GGTGA 1 cut(s) 249
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 296
Hpy99I CGWCG 6 cut(s) 168, 186, 235, 253, 283, 302
HpyAV CCTTC 1 cut(s) 141
HpyCH4V TGCA 3 cut(s) 49, 153, 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
Hsp92I GRCGYC 2 cut(s) 163, 251
Hsp92II CATG 3 cut(s) 153, 336, 367
HspAI GCGC 1 cut(s) 269
Kzo9I GATC 1 cut(s) 288
LpnPI CCDG 4 cut(s) 27, 39, 78, 140
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 16
MalI GATC 1 cut(s) 290
MboI GATC 1 cut(s) 288
MfeI CAATTG 1 cut(s) 272
MluCI AATT 4 cut(s) 112, 272, 304, 344
MnlI CCTC 1 cut(s) 265
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 1 cut(s) 331
MspR9I CCNGG 1 cut(s) 15
MunI CAATTG 1 cut(s) 272
MvaI CCWGG 1 cut(s) 15
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 50
NcoI CCATGG 1 cut(s) 332
NdeII GATC 1 cut(s) 288
NlaIII CATG 3 cut(s) 153, 336, 367
NruI TCGCGA 1 cut(s) 297
NspI RCATGY 1 cut(s) 153
PflFI GACNNNGTC 1 cut(s) 106
PkrI GCNGC 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 13
PspGI CCWGG 1 cut(s) 13
PspPI GGNCC 1 cut(s) 11
PsyI GACNNNGTC 1 cut(s) 106
RruI TCGCGA 1 cut(s) 297
RseI CAYNNNNRTG 1 cut(s) 331
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 1 cut(s) 288
Sau96I GGNCC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 15
SetI ASST 4 cut(s) 43, 94, 129, 213
SfaNI GCATC 1 cut(s) 16
SinI GGWCC 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 331
Sse9I AATT 4 cut(s) 112, 272, 304, 344
StyD4I CCNGG 1 cut(s) 13
StyI CCWWGG 1 cut(s) 332
TasI AATT 4 cut(s) 112, 272, 304, 344
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 352
TspGWI ACGGA 1 cut(s) 187
Tth111I GACNNNGTC 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 11
XapI RAATTY 1 cut(s) 112
XceI RCATGY 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.