Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006355

Physical Location & Seq

Genomic Coordinates Reverse (-)

19598721 .. 19599794

Gene Structure 1074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0197900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGTAAACCCGGCAAATGAGCATTTCCGTGTAGCTGGCATTTGTGACGGGCTGGTGTGCCTTGCGGATGATTTACTATGTAAAATGTTCAACTACATAATATGGAACCCATCAATAAGAAAGGTAGTGACGCTTCCCTGGCCTGGTGTGACCTTCACTACTCATGGTGCTTTTAAAGATTCAATTGGGTTCGGGTTTGATGCTATTACCACTGACTACAAGGTTGTTAGACTTGTCACTCTTGAGAATTTTGAGATTGAAGATGCGGAAAATCCAACCGTGGCTGAGGTTTATTCACTAGCCACAGGCTCATGGAGTAGTCTTGGTTCTGTTGCTCCTCCATGCCACATACTTGGAACAAGACCATACACTTTCTTTAATGGGGCTATTCATTGGACTGTAAGACATTGGCAAAATGCTGGTGCGAATCACTATTTCATATTGACATTTGATCTGGGCAGCGAGTCATTTCGCGAAATAATGAAGCCAAAGGGTACTGAATCGCACTCTGAATCGGAAGTGTTTGTTTCAAGAGATGGGAAATCTCTTGCTCTATTCACATGGTATAAGGATGAGAATGCTAATAATTTTCGGGATATATGGGTAATGAAAGAGTATTGCCAGCAGGAGTCATGGACCAAATTGATAACTCTCGGTCCACAAGATCCAAAAGGATGTTTCGGTCATCCAAAAGCATTATGTTTTAGAAAGAGCGGTGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lysine_decarbox

Protein Analysis

241

Amino Acids

27.22

Weight (kDa)

5.9

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
b-prop_At3g26010-like	PF24750	8 - 171	3.5e-08	F-box protein At3g26010-like, beta-propeller
FBA_3	PF08268	14 - 220	1.4e-19	F-box associated beta propeller domain
FBA_1	PF07734	15 - 219	8.2e-23	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50575
fragaria_vesca	FvH4_3g23860 FvH4_3g23860 FvH4_3g23860 FvH4_3g23860
malus_domestica	MD11G1206400.v1.1
prunus_persica	Prupe.4G230500_v2.0.a1
pyrus_communis	pycom11g17950
rosa_chinensis	RchiOBHm_Chr5g0042111 RchiOBHm_Chr5g0042181
rosa_laevigata	RLG00000034110
rosa_multiflora	Rmu_sc0001715.1_g000037 Rmu_sc0008382.1_g000017
rosa_roxburghii	Rroxscaffold_1G00038550
rosa_rugosa	Rorug05G0197900 Rorug05G0198000 Rorug05G0198400 Rorug05G0198500 Rorug05G0198600
rosa_samantha	Rh4CG186500 Rh5AG283200 Rh5BG288800 Rh5BG289100 Rh5DG298000 Rh7DG390700
rosa_wichuraiana	Rw0G001460 Rw5G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	714
AccII	CGCG	1 cut(s)	474
AciI	CCGC	3 cut(s)	65, 266, 714
AclWI	GGATC	1 cut(s)	659
AcsI	RAATTY	1 cut(s)	247
AfaI	GTAC	1 cut(s)	496
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	4 cut(s)	91, 183, 260, 531
AjnI	CCWGG	2 cut(s)	137, 142
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
AlwI	GGATC	1 cut(s)	659
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	459
ApoI	RAATTY	1 cut(s)	247
AspS9I	GGNCC	2 cut(s)	636, 656
AsuC2I	CCSGG	1 cut(s)	11
AvaII	GGWCC	2 cut(s)	636, 656
BarI	GAAGNNNNNNTAC	2 cut(s)	117, 149
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	471
BccI	CCATC	2 cut(s)	118, 530
BciT130I	CCWGG	2 cut(s)	139, 144
BcnI	CCSGG	1 cut(s)	11
BfaI	CTAG	1 cut(s)	299
BisI	GCNGC	1 cut(s)	460
BlsI	GCNGC	1 cut(s)	461
Bme1390I	CCNGG	3 cut(s)	11, 139, 144
Bme18I	GGWCC	2 cut(s)	636, 656
BmgT120I	GGNCC	2 cut(s)	636, 656
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	3 cut(s)	11, 139, 144
BmsI	GCATC	2 cut(s)	190, 253
Bpu10I	CCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	137, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
BseBI	CCWGG	2 cut(s)	139, 144
BseDI	CCNNGG	2 cut(s)	137, 279
BseGI	GGATG	4 cut(s)	73, 577, 680, 685
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	471
Bsh1236I	CGCG	1 cut(s)	474
BshFI	GGCC	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	583
BsnI	GGCC	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	451, 664
Bsp68I	TCGCGA	1 cut(s)	474
BspACI	CCGC	3 cut(s)	65, 266, 714
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	474
BspLI	GGNNCC	1 cut(s)	107
BspPI	GGATC	1 cut(s)	659
BsrBI	CCGCTC	1 cut(s)	714
BssECI	CCNNGG	2 cut(s)	137, 279
BssMI	GATC	2 cut(s)	451, 664
Bst2UI	CCWGG	2 cut(s)	139, 144
Bst4CI	ACNGT	2 cut(s)	280, 400
BstC8I	GCNNGC	2 cut(s)	37, 623
BstDEI	CTNAG	1 cut(s)	285
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	4 cut(s)	73, 577, 680, 685
BstFNI	CGCG	1 cut(s)	474
BstKTI	GATC	2 cut(s)	454, 667
BstMBI	GATC	2 cut(s)	451, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNI	CCWGG	2 cut(s)	139, 144
BstSCI	CCNGG	3 cut(s)	9, 137, 142
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	664
BstXI	CCANNNNNNTGG	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	664
BsuRI	GGCC	1 cut(s)	142
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	4 cut(s)	73, 577, 680, 685
BtsIMutI	CAGTG	1 cut(s)	210
BtuMI	TCGCGA	1 cut(s)	474
Cac8I	GCNNGC	2 cut(s)	37, 623
Cfr13I	GGNCC	2 cut(s)	636, 656
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	495
CviAII	CATG	5 cut(s)	164, 312, 342, 561, 633
CviJI	RGCY	8 cut(s)	35, 52, 142, 284, 302, 309, 386, 487
CviKI_1	RGCY	8 cut(s)	35, 52, 142, 284, 302, 309, 386, 487
CviQI	GTAC	1 cut(s)	495
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	2 cut(s)	453, 666
DpnII	GATC	2 cut(s)	451, 664
DraI	TTTAAA	1 cut(s)	175
Eco47I	GGWCC	2 cut(s)	636, 656
EcoRII	CCWGG	2 cut(s)	137, 142
FaeI	CATG	5 cut(s)	167, 315, 345, 564, 636
FatI	CATG	5 cut(s)	163, 311, 341, 560, 632
Fnu4HI	GCNGC	1 cut(s)	460
FokI	GGATG	4 cut(s)	80, 584, 672, 687
Fsp4HI	GCNGC	1 cut(s)	460
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	1 cut(s)	460
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	1 cut(s)	139
Hin1II	CATG	5 cut(s)	167, 315, 345, 564, 636
HinfI	GANTC	6 cut(s)	179, 427, 464, 500, 512, 629
HpaII	CCGG	1 cut(s)	11
Hpy166II	GTNNAC	2 cut(s)	7, 659
Hpy188I	TCNGA	2 cut(s)	511, 517
Hpy188III	TCNNGA	4 cut(s)	242, 473, 531, 593
Hpy8I	GTNNAC	2 cut(s)	7, 659
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	2 cut(s)	280, 400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	5 cut(s)	167, 315, 345, 564, 636
Kzo9I	GATC	2 cut(s)	451, 664
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	1 cut(s)	471
LweI	GCATC	2 cut(s)	190, 253
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	4 cut(s)	44, 127, 148, 235
MalI	GATC	2 cut(s)	453, 666
MbiI	CCGCTC	1 cut(s)	714
MboI	GATC	2 cut(s)	451, 664
MboII	GAAGA	1 cut(s)	272
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	664
MluCI	AATT	4 cut(s)	183, 247, 586, 641
MlyI	GAGTC	2 cut(s)	473, 638
MmeI	TCCRAC	1 cut(s)	299
MnlI	CCTC	2 cut(s)	280, 348
MseI	TTAA	2 cut(s)	174, 378
MslI	CAYNNNNRTG	1 cut(s)	27
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	3 cut(s)	11, 139, 144
MunI	CAATTG	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	583
MvaI	CCWGG	2 cut(s)	139, 144
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	1 cut(s)	139
NciI	CCSGG	1 cut(s)	11
NdeII	GATC	2 cut(s)	451, 664
NlaIII	CATG	5 cut(s)	167, 315, 345, 564, 636
NlaIV	GGNNCC	1 cut(s)	107
NmuCI	GTSAC	4 cut(s)	44, 127, 148, 235
NruI	TCGCGA	1 cut(s)	474
PctI	GAATGC	1 cut(s)	583
PfeI	GAWTC	4 cut(s)	179, 427, 500, 512
PkrI	GCNGC	1 cut(s)	461
PleI	GAGTC	2 cut(s)	472, 637
PpsI	GAGTC	2 cut(s)	472, 637
Psp6I	CCWGG	2 cut(s)	137, 142
PspGI	CCWGG	2 cut(s)	137, 142
PspN4I	GGNNCC	1 cut(s)	107
PspPI	GGNCC	2 cut(s)	636, 656
PsrI	GAACNNNNNNTAC	2 cut(s)	310, 342
PsuI	RGATCY	1 cut(s)	664
RruI	TCGCGA	1 cut(s)	474
RsaI	GTAC	1 cut(s)	496
RsaNI	GTAC	1 cut(s)	495
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	174, 378
SatI	GCNGC	1 cut(s)	460
Sau3AI	GATC	2 cut(s)	451, 664
Sau96I	GGNCC	2 cut(s)	636, 656
SchI	GAGTC	2 cut(s)	473, 638
ScrFI	CCNGG	3 cut(s)	11, 139, 144
SetI	ASST	5 cut(s)	37, 126, 155, 225, 291
SfaNI	GCATC	2 cut(s)	190, 253
SinI	GGWCC	2 cut(s)	636, 656
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	4 cut(s)	183, 247, 586, 641
SsiI	CCGC	3 cut(s)	65, 266, 714
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	3 cut(s)	9, 137, 142
TaaI	ACNGT	2 cut(s)	280, 400
TaqII	GACCGA	2 cut(s)	644, 671
TasI	AATT	4 cut(s)	183, 247, 586, 641
TfiI	GAWTC	4 cut(s)	179, 427, 500, 512
Tru1I	TTAA	2 cut(s)	174, 378
Tru9I	TTAA	2 cut(s)	174, 378
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	4 cut(s)	44, 127, 148, 235
TseI	GCWGC	1 cut(s)	459
Tsp45I	GTSAC	4 cut(s)	44, 127, 148, 235
TspDTI	ATGAA	4 cut(s)	380, 427, 497, 623
TspGWI	ACGGA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	217
VpaK11BI	GGWCC	2 cut(s)	636, 656
XapI	RAATTY	1 cut(s)	247
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.