Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006355

Physical Location & Seq

Genomic Coordinates Forward (+)

53515261 .. 53518911

Gene Structure 3651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG390700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTTGCAAAATGTAGAGTGGAACAGCTTTGCCTCTTCCCCTATGACCTCATCCAGCAAGAGCTGTAGTGATATCCTAGTCAGGAAAGAGATAGAACGATGCTATGAACTGATACACAGACTTGGGAGAGGGGTTGTGTATTTGGGATCTTCAAGGATGGGACCTGATCATTCACATTATTTGCAAGTACTTGAGTTGGGTAGAGAGATTGCAAACCTTTTGGAATGTACTTCATGGATGGGGGCTGGTCCAGGGCTAATGGATGCTGCTACTAAAGGTGCTTTGCAAGCAGGAAAATCAGTTGGTGGATTTAAGATTGGTAAAGAAGCTGGCGAATGGACAGCGTCAAATTCCCATCCTTACCTGCCTTCAGAAGTTTATCTAACATGCAGATGGACTGGAACATGGAGAAGAGAACATTGTTTCGTAGATAGACTGGAACATGGAGAAAAGAACAAGGGGCATGCTGATGTTAAAGAGGGAGGAGCTCAGCTTTGCAGAGATGACCACCTTGGCTATTATGGATGTATATATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lysine_decarbox

Protein Analysis

179

Amino Acids

19.91

Weight (kDa)

6.7

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50575
fragaria_vesca	FvH4_3g23860 FvH4_3g23860 FvH4_3g23860 FvH4_3g23860
malus_domestica	MD11G1206400.v1.1
prunus_persica	Prupe.4G230500_v2.0.a1
pyrus_communis	pycom11g17950
rosa_chinensis	RchiOBHm_Chr5g0042111 RchiOBHm_Chr5g0042181
rosa_laevigata	RLG00000034110
rosa_multiflora	Rmu_sc0001715.1_g000037 Rmu_sc0008382.1_g000017
rosa_roxburghii	Rroxscaffold_1G00038550
rosa_rugosa	Rorug05G0197900 Rorug05G0198000 Rorug05G0198400 Rorug05G0198500 Rorug05G0198600
rosa_samantha	Rh4CG186500 Rh5AG283200 Rh5BG288800 Rh5BG289100 Rh5DG298000 Rh7DG390700
rosa_wichuraiana	Rw0G001460 Rw5G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	372
AclWI	GGATC	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	349
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	2 cut(s)	189, 229
AgsI	TTSAA	1 cut(s)	153
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	5 cut(s)	27, 63, 329, 488, 493
AluI	AGCT	5 cut(s)	27, 63, 329, 488, 493
Alw21I	GWGCWC	1 cut(s)	490
AlwI	GGATC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	161, 248
AvaII	GGWCC	2 cut(s)	161, 248
BanII	GRGCYC	1 cut(s)	490
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	4 cut(s)	151, 232, 363, 387
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	1 cut(s)	166
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	64
BfuAI	ACCTGC	1 cut(s)	372
BisI	GCNGC	1 cut(s)	267
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	268
BmcAI	AGTACT	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	2 cut(s)	161, 248
BmgT120I	GGNCC	2 cut(s)	161, 248
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	2 cut(s)	89, 253
Bpu1102I	GCTNAGC	1 cut(s)	489
BpuEI	CTTGAG	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	251, 511
Bse1I	ACTGG	2 cut(s)	403, 441
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	251, 511
BseGI	GGATG	6 cut(s)	50, 162, 243, 268, 355, 530
BseMII	CTCAG	1 cut(s)	503
BseNI	ACTGG	2 cut(s)	403, 441
BseRI	GAGGAG	1 cut(s)	498
BseXI	GCAGC	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	490
BslFI	GGGAC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp143I	GATC	2 cut(s)	146, 166
Bsp1720I	GCTNAGC	1 cut(s)	489
BspCNI	CTCAG	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	162
BspMI	ACCTGC	1 cut(s)	372
BspPI	GGATC	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	403, 441
BssECI	CCNNGG	2 cut(s)	251, 511
BssMI	GATC	2 cut(s)	146, 166
BssT1I	CCWWGG	1 cut(s)	511
Bst2UI	CCWGG	1 cut(s)	252
Bst6I	CTCTTC	2 cut(s)	40, 406
BstC8I	GCNNGC	3 cut(s)	288, 331, 465
BstDEI	CTNAG	1 cut(s)	489
BstF5I	GGATG	6 cut(s)	50, 162, 243, 268, 355, 530
BstKTI	GATC	2 cut(s)	149, 169
BstMBI	GATC	2 cut(s)	146, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	2 cut(s)	390, 467
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	146
BstYI	RGATCY	1 cut(s)	146
BtsCI	GGATG	6 cut(s)	50, 162, 243, 268, 355, 530
BveI	ACCTGC	1 cut(s)	372
Cac8I	GCNNGC	3 cut(s)	288, 331, 465
Cfr13I	GGNCC	2 cut(s)	161, 248
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	2 cut(s)	188, 228
CviAII	CATG	5 cut(s)	234, 387, 405, 443, 464
CviJI	RGCY	8 cut(s)	27, 63, 245, 256, 329, 488, 493, 516
CviKI_1	RGCY	8 cut(s)	27, 63, 245, 256, 329, 488, 493, 516
CviQI	GTAC	2 cut(s)	188, 228
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	2 cut(s)	148, 168
DpnII	GATC	2 cut(s)	146, 166
Eam1104I	CTCTTC	2 cut(s)	40, 406
EarI	CTCTTC	2 cut(s)	40, 406
Ecl136II	GAGCTC	1 cut(s)	488
Eco130I	CCWWGG	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	490
Eco32I	GATATC	1 cut(s)	73
Eco47I	GGWCC	2 cut(s)	161, 248
Eco53kI	GAGCTC	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	354
EcoICRI	GAGCTC	1 cut(s)	488
EcoO109I	RGGNCCY	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	250
EcoRV	GATATC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	5 cut(s)	237, 390, 408, 446, 467
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	5 cut(s)	233, 386, 404, 442, 463
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	5 cut(s)	37, 169, 250, 275, 342
FriOI	GRGCYC	1 cut(s)	490
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	1 cut(s)	267
HgaI	GACGC	1 cut(s)	333
Hin1II	CATG	5 cut(s)	237, 390, 408, 446, 467
Hpy188I	TCNGA	1 cut(s)	373
Hpy188III	TCNNGA	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	378
HpyCH4V	TGCA	6 cut(s)	7, 184, 212, 286, 390, 498
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	1 cut(s)	489
Hsp92II	CATG	5 cut(s)	237, 390, 408, 446, 467
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	146, 166
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	2 cut(s)	89, 253
MaeI	CTAG	1 cut(s)	77
MalI	GATC	2 cut(s)	148, 168
MboI	GATC	2 cut(s)	146, 166
MboII	GAAGA	3 cut(s)	27, 141, 423
MflI	RGATCY	1 cut(s)	146
MhlI	GDGCHC	1 cut(s)	490
MluCI	AATT	1 cut(s)	349
MnlI	CCTC	5 cut(s)	43, 58, 122, 472, 476
MseI	TTAA	2 cut(s)	312, 474
MslI	CAYNNNNRTG	2 cut(s)	391, 468
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	2 cut(s)	146, 166
NlaIII	CATG	5 cut(s)	237, 390, 408, 446, 467
NlaIV	GGNNCC	1 cut(s)	162
NspI	RCATGY	2 cut(s)	390, 467
PaeI	GCATGC	1 cut(s)	467
PflFI	GACNNNGTC	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	161
Psp124BI	GAGCTC	1 cut(s)	490
Psp5II	RGGWCCY	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	161, 248
PspPPI	RGGWCCY	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	146
PsyI	GACNNNGTC	1 cut(s)	343
RsaI	GTAC	2 cut(s)	189, 229
RsaNI	GTAC	2 cut(s)	188, 228
RseI	CAYNNNNRTG	2 cut(s)	391, 468
SacI	GAGCTC	1 cut(s)	490
SaqAI	TTAA	2 cut(s)	312, 474
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	2 cut(s)	146, 166
Sau96I	GGNCC	2 cut(s)	161, 248
ScaI	AGTACT	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	490
SfaNI	GCATC	2 cut(s)	89, 253
SfcI	CTRYAG	1 cut(s)	64
SinI	GGWCC	2 cut(s)	161, 248
SmiMI	CAYNNNNRTG	2 cut(s)	391, 468
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SphI	GCATGC	1 cut(s)	467
Sse9I	AATT	1 cut(s)	349
SspMI	CTAG	1 cut(s)	77
SstI	GAGCTC	1 cut(s)	490
StyD4I	CCNGG	1 cut(s)	250
StyI	CCWWGG	1 cut(s)	511
TasI	AATT	1 cut(s)	349
TatI	WGTACW	2 cut(s)	187, 227
Tru1I	TTAA	2 cut(s)	312, 474
Tru9I	TTAA	2 cut(s)	312, 474
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	2 cut(s)	120, 222
Tth111I	GACNNNGTC	1 cut(s)	343
VpaK11BI	GGWCC	2 cut(s)	161, 248
XapI	RAATTY	1 cut(s)	349
XceI	RCATGY	2 cut(s)	390, 467
XspI	CTAG	1 cut(s)	77
ZrmI	AGTACT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.