Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0006355

Physical Location & Seq

Genomic Coordinates Reverse (-)

20226489 .. 20228421

Gene Structure 1933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g17950.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGGTTTTCGGTGCTGGGATCAGTGGGCTCTCATATTTTTGTAAGAAATTCTTACGAAAGGACTTTGAAGATTCAATCTTTCAGGGAAAGAGAGAGACCCACCATTGGTTTCGAGCTCTCAAGGTCGAGGTCCTACCATGGAAGAATCAAGTCGAGCAAGTATGAATTACTTGACTTTGATGGAAGAACAAGCCCAAATGAGGTGAGGAAAGAGATACAACGATGTTATGAACTGATACACAGACTTGGGAGAGGAGTTGTGTATTTGGGTTCTTCAAGGATGGGACCTGATCATTCACATTATTCGAAAACGCTAGAGTTAAGCACAGAGATTGCAAATCTTCTGGGATGTACTTCATGGACGGGGGCTGGTCCGGGGCTAATGGATGCTGCTACTAAAGGTGCTTTGCGTGCAGGAAAATCGGTTGGTGGATTTAAGATTGGTAAAGAAGCTGGCGAATGGACAGCATCAAATTATCATCCCTACCTGCCATCAGAAGTGTATCTCACATGTTTTTCTCTGCTAGGAAGCATGGTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lysine_decarbox

Protein Analysis

182

Amino Acids

20.19

Weight (kDa)

9.43

Isoelectric Point (pI)

30.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50575
fragaria_vesca	FvH4_3g23860 FvH4_3g23860 FvH4_3g23860 FvH4_3g23860
malus_domestica	MD11G1206400.v1.1
prunus_persica	Prupe.4G230500_v2.0.a1
pyrus_communis	pycom11g17950
rosa_chinensis	RchiOBHm_Chr5g0042111 RchiOBHm_Chr5g0042181
rosa_laevigata	RLG00000034110
rosa_multiflora	Rmu_sc0001715.1_g000037 Rmu_sc0008382.1_g000017
rosa_roxburghii	Rroxscaffold_1G00038550
rosa_rugosa	Rorug05G0197900 Rorug05G0198000 Rorug05G0198400 Rorug05G0198500 Rorug05G0198600
rosa_samantha	Rh4CG186500 Rh5AG283200 Rh5BG288800 Rh5BG289100 Rh5DG298000 Rh7DG390700
rosa_wichuraiana	Rw0G001460 Rw5G029680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	498
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	49
AfaI	GTAC	1 cut(s)	355
AfiI	CCNNNNNNNGG	2 cut(s)	107, 202
AflIII	ACRYGT	1 cut(s)	512
AgsI	TTSAA	3 cut(s)	70, 77, 279
AjuI	GAANNNNNNNTTGG	1 cut(s)	523
AluBI	AGCT	2 cut(s)	118, 455
AluI	AGCT	2 cut(s)	118, 455
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	1 cut(s)	49
AspS9I	GGNCC	3 cut(s)	132, 287, 374
AsuC2I	CCSGG	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	217
AsuII	TTCGAA	1 cut(s)	308
AvaII	GGWCC	3 cut(s)	132, 287, 374
BanII	GRGCYC	2 cut(s)	32, 120
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	3 cut(s)	176, 277, 502
BcgI	CGANNNNNNTGC	2 cut(s)	405, 439
BclI	TGATCA	1 cut(s)	292
BcnI	CCSGG	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	2 cut(s)	317, 527
BfuAI	ACCTGC	1 cut(s)	498
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	3 cut(s)	132, 287, 374
BmgT120I	GGNCC	3 cut(s)	132, 287, 374
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	378
BmsI	GCATC	2 cut(s)	379, 479
Bpu14I	TTCGAA	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	2 cut(s)	139, 377
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 202
BseDI	CCNNGG	2 cut(s)	139, 377
BseGI	GGATG	4 cut(s)	288, 356, 394, 481
BseLI	CCNNNNNNNGG	2 cut(s)	107, 202
BseRI	GAGGAG	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	379
BseYI	CCCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	435
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	377
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	2 cut(s)	107, 202
BsmAI	GTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	300
Bso31I	GGTCTC	1 cut(s)	91
Bsp119I	TTCGAA	1 cut(s)	308
Bsp1286I	GDGCHC	2 cut(s)	32, 120
Bsp143I	GATC	2 cut(s)	20, 292
Bsp19I	CCATGG	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	288
BspMI	ACCTGC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	139, 377
BssMI	GATC	2 cut(s)	20, 292
BssT1I	CCWWGG	1 cut(s)	139
BstBI	TTCGAA	1 cut(s)	308
BstC8I	GCNNGC	2 cut(s)	414, 457
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	4 cut(s)	288, 356, 394, 481
BstKTI	GATC	2 cut(s)	23, 295
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	2 cut(s)	20, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNSI	RCATGY	1 cut(s)	516
BstSCI	CCNGG	1 cut(s)	376
BstV1I	GCAGC	1 cut(s)	379
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	4 cut(s)	288, 356, 394, 481
BtsIMutI	CAGTG	1 cut(s)	30
BveI	ACCTGC	1 cut(s)	498
Cac8I	GCNNGC	2 cut(s)	414, 457
Cfr13I	GGNCC	3 cut(s)	132, 287, 374
Csp6I	GTAC	1 cut(s)	354
CviAII	CATG	4 cut(s)	140, 360, 513, 535
CviJI	RGCY	6 cut(s)	30, 118, 195, 371, 382, 455
CviKI_1	RGCY	6 cut(s)	30, 118, 195, 371, 382, 455
CviQI	GTAC	1 cut(s)	354
DpnI	GATC	2 cut(s)	22, 294
DpnII	GATC	2 cut(s)	20, 292
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	139
Eco24I	GRGCYC	2 cut(s)	32, 120
Eco31I	GGTCTC	1 cut(s)	91
Eco47I	GGWCC	3 cut(s)	132, 287, 374
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoO109I	RGGNCCY	2 cut(s)	132, 287
EcoT14I	CCWWGG	1 cut(s)	139
EcoT38I	GRGCYC	2 cut(s)	32, 120
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	4 cut(s)	143, 363, 516, 538
FaiI	YATR	7 cut(s)	36, 141, 165, 231, 361, 514, 536
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	4 cut(s)	139, 359, 512, 534
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	4 cut(s)	295, 363, 401, 468
FriOI	GRGCYC	2 cut(s)	32, 120
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	2 cut(s)	317, 527
GluI	GCNGC	1 cut(s)	393
GsaI	CCCAGC	1 cut(s)	20
HapII	CCGG	1 cut(s)	377
Hin1II	CATG	4 cut(s)	143, 363, 516, 538
HinfI	GANTC	2 cut(s)	73, 147
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	499
HpyCH4V	TGCA	2 cut(s)	338, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
Hsp92II	CATG	4 cut(s)	143, 363, 516, 538
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	20, 292
LpnPI	CCDG	9 cut(s)	2, 70, 303, 332, 357, 390, 402, 441, 503
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	2 cut(s)	379, 479
MaeI	CTAG	2 cut(s)	317, 527
MalI	GATC	2 cut(s)	22, 294
MboI	GATC	2 cut(s)	20, 292
MboII	GAAGA	5 cut(s)	82, 156, 198, 267, 335
MhlI	GDGCHC	2 cut(s)	32, 120
MluCI	AATT	3 cut(s)	49, 167, 475
MnlI	CCTC	4 cut(s)	123, 196, 201, 248
MseI	TTAA	2 cut(s)	323, 438
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	413
NciI	CCSGG	1 cut(s)	378
NcoI	CCATGG	1 cut(s)	139
NdeII	GATC	2 cut(s)	20, 292
NlaIII	CATG	4 cut(s)	143, 363, 516, 538
NlaIV	GGNNCC	1 cut(s)	288
NspI	RCATGY	1 cut(s)	516
NspV	TTCGAA	1 cut(s)	308
PciI	ACATGT	1 cut(s)	512
PfeI	GAWTC	2 cut(s)	73, 147
PkrI	GCNGC	1 cut(s)	394
PpuMI	RGGWCCY	2 cut(s)	132, 287
PscI	ACATGT	1 cut(s)	512
Psp124BI	GAGCTC	1 cut(s)	120
Psp5II	RGGWCCY	2 cut(s)	132, 287
PspFI	CCCAGC	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	3 cut(s)	132, 287, 374
PspPPI	RGGWCCY	2 cut(s)	132, 287
RsaI	GTAC	1 cut(s)	355
RsaNI	GTAC	1 cut(s)	354
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	323, 438
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	2 cut(s)	20, 292
Sau96I	GGNCC	3 cut(s)	132, 287, 374
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	2 cut(s)	32, 120
SetI	ASST	8 cut(s)	120, 128, 134, 207, 292, 406, 457, 492
SfaNI	GCATC	2 cut(s)	379, 479
SfuI	TTCGAA	1 cut(s)	308
SinI	GGWCC	3 cut(s)	132, 287, 374
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	3 cut(s)	49, 167, 475
SspMI	CTAG	2 cut(s)	317, 527
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	139
TaqI	TCGA	4 cut(s)	114, 128, 155, 308
TasI	AATT	3 cut(s)	49, 167, 475
TatI	WGTACW	1 cut(s)	353
TfiI	GAWTC	2 cut(s)	73, 147
Tru1I	TTAA	2 cut(s)	323, 438
Tru9I	TTAA	2 cut(s)	323, 438
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	1 cut(s)	392
TspDTI	ATGAA	3 cut(s)	180, 246, 348
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	3 cut(s)	132, 287, 374
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	1 cut(s)	516
XspI	CTAG	2 cut(s)	317, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.