AT1G51950

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010805
Physical Location & Seq
Forward (+)
19305081 .. 19307518
2438 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G51950.1

Sequence Viewer

Length: 804 bp
ATGGAGGGTTATTCAAGAAACGGTGAAATCTCTCCGAAGCTGCTTGACTTGATGATTCCACAAGAGAGAAGAAATTGGTTTCACGATGAGAAAAACTCTGTTTTCAAAACAGAGGAGAAGAAGCTTGAGCTAAAGCTTGGACCACCTGGTGAAGAAGATGATGATGAATCGATGATAAGACACATGAAGAAAGAACCAAAAGACAAATCTATCCTCTCTCTCGCTGGCAAATACTTCTCTCCTTCTTCCACCAAAACCACATCCCATAAAAGAACTGCTCCTGGTCCAGTGGTGGGATGGCCTCCGGTTCGATCCTTCAGGAAGAATTTAGCTAGTGGAAGTTCTTCAAAGCTTGGAAATGACTCAACCACCTCCAATGGTGTTACCCTCAAGAACCAAAAGTGTGATGCTGCTGCTAAGACAACAGAACCAAAGAGACAAGGAGGCATGTTTGTGAAGATCAACATGTATGGTGTTCCCATTGGTCGTAAAGTTGATCTCAGTGCTCATAATAGCTATGAGCAGTTATCTTTCACAGTTGACAAGCTCTTCAGAGGTCTTCTTGCAGCTCAAAGAGACTTTCCATCATCCATAGAAGATGAAAAACCAATCACTGGATTATTAGATGGGAATGGAGAATATACTCTTACATATGAAGACAATGAAGGAGACAAGATGCTTGTAGGAGATGTTCCATGGCAAATGTTTGTGTCTTCGGTGAAGAGGCTGCGTGTGATTAAAACTTCTGAGATTTCTTCAGCATTAACATATGGAAATGGTAAGCAAGAGAAAATGAGAAGATGA

Protein Analysis

267

Amino Acids

29.9

Weight (kDa)

9.26

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 42 - 252 8e-57 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51950 AT3G16500 AT3G16500
fragaria_vesca FvH4_6g32450 FvH4_6g32450
malus_domestica MD09G1202300.v1.1 MD17G1183500.v1.1
prunus_persica Prupe.3G058600_v2.0.a1
pyrus_communis pycom09g11930 pycom17g19260
rosa_chinensis RchiOBHm_Chr2g0140681
rosa_laevigata RLG00000019891
rosa_multiflora Rmu_sc0003342.1_g000011
rosa_roxburghii Rroxscaffold_2G00104590
rosa_rugosa Rorug02G0364000
rosa_samantha Rh2AG415700 Rh2BG425200 Rh2CG401700 Rh2DG435200
rosa_wichuraiana Rw2G034010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 614
AclWI GGATC 1 cut(s) 306
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 3 cut(s) 301, 535, 741
AdeI CACNNNGTG 1 cut(s) 149
AfiI CCNNNNNNNGG 2 cut(s) 293, 614
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 3 cut(s) 15, 106, 348
AjnI CCWGG 2 cut(s) 145, 280
AluBI AGCT 9 cut(s) 40, 124, 130, 136, 332, 352, 516, 547, 569
AluI AGCT 9 cut(s) 40, 124, 130, 136, 332, 352, 516, 547, 569
Alw21I GWGCWC 1 cut(s) 508
Alw26I GTCTC 3 cut(s) 430, 570, 663
AlwI GGATC 1 cut(s) 306
AoxI GGCC 1 cut(s) 299
ApeKI GCWGC 5 cut(s) 40, 410, 413, 566, 727
ApoI RAATTY 1 cut(s) 325
Asp700I GAANNNNTTC 1 cut(s) 343
AspS9I GGNCC 2 cut(s) 140, 284
AsuHPI GGTGA 3 cut(s) 35, 161, 730
AvaII GGWCC 2 cut(s) 140, 284
BbsI GAAGAC 3 cut(s) 551, 663, 705
Bbv12I GWGCWC 1 cut(s) 508
BbvI GCAGC 5 cut(s) 27, 397, 400, 578, 714
BccI CCATC 3 cut(s) 291, 592, 620
BciT130I CCWGG 2 cut(s) 147, 282
BcoDI GTCTC 3 cut(s) 430, 570, 663
BfaI CTAG 1 cut(s) 333
BisI GCNGC 5 cut(s) 41, 411, 414, 567, 728
BlsI GCNGC 5 cut(s) 42, 412, 415, 568, 729
Bme1390I CCNGG 2 cut(s) 147, 282
Bme18I GGWCC 2 cut(s) 140, 284
BmgT120I GGNCC 2 cut(s) 140, 284
BmrFI CCNGG 2 cut(s) 147, 282
BmsI GCATC 2 cut(s) 397, 666
BpiI GAAGAC 3 cut(s) 551, 663, 705
BplI GAGNNNNNCTC 2 cut(s) 80, 112
BpuEI CTTGAG 2 cut(s) 146, 374
Bsa29I ATCGAT 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 695
BsaWI WCCGGW 1 cut(s) 304
Bsc4I CCNNNNNNNGG 2 cut(s) 293, 614
Bse1I ACTGG 2 cut(s) 287, 619
BseBI CCWGG 2 cut(s) 147, 282
BseCI ATCGAT 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 695
BseGI GGATG 3 cut(s) 260, 302, 587
BseLI CCNNNNNNNGG 2 cut(s) 293, 614
BseMII CTCAG 2 cut(s) 514, 738
BseNI ACTGG 2 cut(s) 287, 619
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 5 cut(s) 27, 397, 400, 578, 714
BshFI GGCC 1 cut(s) 301
BshVI ATCGAT 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 508
BsiSI CCGG 1 cut(s) 305
BslI CCNNNNNNNGG 2 cut(s) 293, 614
BsmAI GTCTC 3 cut(s) 430, 570, 663
BsnI GGCC 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 508
Bsp143I GATC 3 cut(s) 311, 459, 496
Bsp19I CCATGG 1 cut(s) 695
BspANI GGCC 1 cut(s) 301
BspCNI CTCAG 2 cut(s) 513, 739
BspDI ATCGAT 1 cut(s) 170
BspPI GGATC 1 cut(s) 306
BspQI GCTCTTC 1 cut(s) 554
BsrI ACTGG 2 cut(s) 287, 619
BssECI CCNNGG 1 cut(s) 695
BssMI GATC 3 cut(s) 311, 459, 496
BssT1I CCWWGG 1 cut(s) 695
Bst2UI CCWGG 2 cut(s) 147, 282
Bst4CI ACNGT 2 cut(s) 23, 538
Bst6I CTCTTC 2 cut(s) 554, 716
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 3 cut(s) 417, 500, 747
BstDSI CCRYGG 1 cut(s) 695
BstF5I GGATG 3 cut(s) 260, 302, 587
BstKTI GATC 3 cut(s) 314, 462, 499
BstMAI GTCTC 3 cut(s) 430, 570, 663
BstMBI GATC 3 cut(s) 311, 459, 496
BstNI CCWGG 2 cut(s) 147, 282
BstNSI RCATGY 2 cut(s) 451, 469
BstSCI CCNGG 2 cut(s) 145, 280
BstV1I GCAGC 5 cut(s) 27, 397, 400, 578, 714
BstV2I GAAGAC 3 cut(s) 551, 663, 705
Bsu15I ATCGAT 1 cut(s) 170
BsuRI GGCC 1 cut(s) 301
BsuTUI ATCGAT 1 cut(s) 170
BtgI CCRYGG 1 cut(s) 695
BtsCI GGATG 3 cut(s) 260, 302, 587
BtsIMutI CAGTG 3 cut(s) 294, 508, 612
Cac8I GCNNGC 1 cut(s) 226
Cfr13I GGNCC 2 cut(s) 140, 284
ClaI ATCGAT 1 cut(s) 170
CsiI ACCWGGT 1 cut(s) 145
CviAII CATG 4 cut(s) 184, 448, 466, 696
DdeI CTNAG 3 cut(s) 417, 500, 747
DpnI GATC 3 cut(s) 313, 461, 498
DpnII GATC 3 cut(s) 311, 459, 496
DraIII CACNNNGTG 1 cut(s) 149
Eam1104I CTCTTC 2 cut(s) 554, 716
EarI CTCTTC 2 cut(s) 554, 716
Eco130I CCWWGG 1 cut(s) 695
Eco47I GGWCC 2 cut(s) 140, 284
Eco57I CTGAAG 3 cut(s) 301, 535, 741
EcoRII CCWGG 2 cut(s) 145, 280
EcoT14I CCWWGG 1 cut(s) 695
ErhI CCWWGG 1 cut(s) 695
FaeI CATG 4 cut(s) 187, 451, 469, 699
FatI CATG 4 cut(s) 183, 447, 465, 695
FauNDI CATATG 2 cut(s) 652, 769
Fnu4HI GCNGC 5 cut(s) 41, 411, 414, 567, 728
FokI GGATG 3 cut(s) 247, 309, 574
Fsp4HI GCNGC 5 cut(s) 41, 411, 414, 567, 728
FspBI CTAG 1 cut(s) 333
GluI GCNGC 5 cut(s) 41, 411, 414, 567, 728
HaeIII GGCC 1 cut(s) 301
HapII CCGG 1 cut(s) 305
Hin1II CATG 4 cut(s) 187, 451, 469, 699
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HindIII AAGCTT 3 cut(s) 122, 134, 350
HinfI GANTC 3 cut(s) 55, 167, 362
HpaII CCGG 1 cut(s) 305
HphI GGTGA 3 cut(s) 35, 161, 730
Hpy166II GTNNAC 1 cut(s) 541
Hpy188I TCNGA 3 cut(s) 36, 554, 748
Hpy188III TCNNGA 4 cut(s) 15, 83, 319, 391
Hpy8I GTNNAC 1 cut(s) 541
HpyAV CCTTC 3 cut(s) 252, 325, 659
HpyCH4III ACNGT 2 cut(s) 23, 538
HpyCH4V TGCA 1 cut(s) 566
HpyF3I CTNAG 3 cut(s) 417, 500, 747
Hsp92II CATG 4 cut(s) 187, 451, 469, 699
Kzo9I GATC 3 cut(s) 311, 459, 496
LguI GCTCTTC 1 cut(s) 554
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 9 cut(s) 132, 159, 210, 267, 294, 300, 304, 318, 600
Lsp1109I GCAGC 5 cut(s) 27, 397, 400, 578, 714
LweI GCATC 2 cut(s) 397, 666
MabI ACCWGGT 1 cut(s) 145
MaeI CTAG 1 cut(s) 333
MaeIII GTNAC 1 cut(s) 382
MalI GATC 3 cut(s) 313, 461, 498
MboI GATC 3 cut(s) 311, 459, 496
MhlI GDGCHC 1 cut(s) 508
MluCI AATT 2 cut(s) 73, 325
MlyI GAGTC 1 cut(s) 356
MnlI CCTC 8 cut(s) 106, 224, 312, 382, 398, 437, 548, 717
MroXI GAANNNNTTC 1 cut(s) 343
MseI TTAA 2 cut(s) 738, 764
MslI CAYNNNNRTG 1 cut(s) 452
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 2 cut(s) 147, 282
MvaI CCWGG 2 cut(s) 147, 282
NcoI CCATGG 1 cut(s) 695
NdeI CATATG 2 cut(s) 652, 769
NdeII GATC 3 cut(s) 311, 459, 496
NlaIII CATG 4 cut(s) 187, 451, 469, 699
NspI RCATGY 2 cut(s) 451, 469
PciI ACATGT 1 cut(s) 465
PciSI GCTCTTC 1 cut(s) 554
PdmI GAANNNNTTC 1 cut(s) 343
PfeI GAWTC 2 cut(s) 55, 167
PflMI CCANNNNNTGG 1 cut(s) 614
PkrI GCNGC 5 cut(s) 42, 412, 415, 568, 729
PleI GAGTC 1 cut(s) 356
PpsI GAGTC 1 cut(s) 356
PscI ACATGT 1 cut(s) 465
Psp6I CCWGG 2 cut(s) 145, 280
PspGI CCWGG 2 cut(s) 145, 280
PspPI GGNCC 2 cut(s) 140, 284
PsrI GAACNNNNNNTAC 2 cut(s) 675, 707
RseI CAYNNNNRTG 1 cut(s) 452
SapI GCTCTTC 1 cut(s) 554
SaqAI TTAA 2 cut(s) 738, 764
SatI GCNGC 5 cut(s) 41, 411, 414, 567, 728
Sau3AI GATC 3 cut(s) 311, 459, 496
Sau96I GGNCC 2 cut(s) 140, 284
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 2 cut(s) 147, 282
SduI GDGCHC 1 cut(s) 508
SexAI ACCWGGT 1 cut(s) 145
SfaNI GCATC 2 cut(s) 397, 666
SinI GGWCC 2 cut(s) 140, 284
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 2 cut(s) 125, 389
SmoI CTYRAG 2 cut(s) 125, 389
Sse9I AATT 2 cut(s) 73, 325
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 2 cut(s) 145, 280
StyI CCWWGG 1 cut(s) 695
TaaI ACNGT 2 cut(s) 23, 538
TaqI TCGA 2 cut(s) 170, 310
TasI AATT 2 cut(s) 73, 325
TfiI GAWTC 2 cut(s) 55, 167
Tru1I TTAA 2 cut(s) 738, 764
Tru9I TTAA 2 cut(s) 738, 764
TscAI CASTG 3 cut(s) 294, 508, 619
TseI GCWGC 5 cut(s) 40, 410, 413, 566, 727
TspDTI ATGAA 5 cut(s) 180, 200, 615, 669, 678
TspRI CASTG 3 cut(s) 294, 508, 619
Van91I CCANNNNNTGG 1 cut(s) 614
VpaK11BI GGWCC 2 cut(s) 140, 284
XapI RAATTY 1 cut(s) 325
XceI RCATGY 2 cut(s) 451, 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 343
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.