Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010805

Physical Location & Seq

Genomic Coordinates Reverse (-)

17002449 .. 17004682

Gene Structure 2234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g19260.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGTCACCGAGATGGAGGGATGTACAAGGAAGGAGGAGGAGGCATGTCCCCAGCTCCTAGATTTAATTCCTAGACAGAGAGACTGGCTTATGAACAGAGATATTGAAGGCAGCAGCCATGGAAGCTCCTCCTCAGAGGAGAAGAAGCTTGAGCTCAGGCTTGGCCCTCCATGCCAAGACTGGTCAATGGAAAGAGAAAGAGATGAGAAGTCTCAGTCCCTTCTCTCTCTTGGGTACTTTTCTTCCCCCATGTTCTCCAACCAAACCCAGAAACTTATTTCTTCTTACCAGCAGCAGGCAAAAGTTGGATCTTTTGTTCACCTGCCTGTCAACTCCAACAAACCGTCACAGCCCTGTTGCAGTAAAGTGGTAGACTTGCAGAATGCAGAAAGGAAAGGGTTTTCACCAGCCCCTGCAGACACAGCTGTGCTCCCCAACACCTCTCAGAAAAGAACTGCTCCTGCTTCGGTTGTGGGTTGGCCTCCAGTTCGATCATTTAGGAAAAATCTTGCAAGCAACAACTCATCGAAACCTGCGGTTGAATCCGAAAATGTTGTCCAAAACAAAGTTCCTAGTGGTAAACCAGTTGAAACCCGCAGACAGGGTCTGTTTGTGAAAATTAACATGGATGGAGTTCCCATCGGAAGAAAAGTGGACCTCAGTGCCCATGACAGCTACCAAAAGCTCTCCTCCGCTGTCGATCAACTCTTCCGTGACCTTCTCGCAGCTCAAAGAGATTCCTGTGCTGGTGGAACCAAGAACAAGAAAGGGGAAGAGAAAGAAATCACAGGTTTATTGGATGGAAGTGGAGAATATACCCTAGTTTATGAAGATAATGAAGGAGACAGGATGCTCGTTGGGGATGTCCCATGGCAGATGTTTGTGTCGACTGTGAAGAGGCTGCGTGTGCTCAAGAGCTCTGAACTGTCTGCACTTCGTCTTCGTAGCAGCAAGCAAGGTAAGATGCCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006417 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

325

Amino Acids

35.95

Weight (kDa)

8.92

Isoelectric Point (pI)

55.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51950 AT3G16500 AT3G16500
fragaria_vesca	FvH4_6g32450 FvH4_6g32450
malus_domestica	MD09G1202300.v1.1 MD17G1183500.v1.1
prunus_persica	Prupe.3G058600_v2.0.a1
pyrus_communis	pycom09g11930 pycom17g19260
rosa_chinensis	RchiOBHm_Chr2g0140681
rosa_laevigata	RLG00000019891
rosa_multiflora	Rmu_sc0003342.1_g000011
rosa_roxburghii	Rroxscaffold_2G00104590
rosa_rugosa	Rorug02G0364000
rosa_samantha	Rh2AG415700 Rh2BG425200 Rh2CG401700 Rh2DG435200
rosa_wichuraiana	Rw2G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	330
Acc36I	ACCTGC	2 cut(s)	330, 541
AccI	GTMKAC	2 cut(s)	372, 887
AciI	CCGC	3 cut(s)	536, 595, 693
AclWI	GGATC	1 cut(s)	316
AfaI	GTAC	2 cut(s)	25, 236
AfiI	CCNNNNNNNGG	2 cut(s)	295, 601
AgsI	TTSAA	3 cut(s)	107, 542, 590
AjuI	GAANNNNNNNTTGG	2 cut(s)	552, 584
AleI	CACNNNNGTG	1 cut(s)	425
AloI	GAACNNNNNNTCC	2 cut(s)	300, 332
AluBI	AGCT	9 cut(s)	55, 126, 148, 154, 425, 675, 685, 728, 918
AluI	AGCT	9 cut(s)	55, 126, 148, 154, 425, 675, 685, 728, 918
Alw21I	GWGCWC	4 cut(s)	156, 432, 912, 920
Alw26I	GTCTC	3 cut(s)	75, 216, 837
AlwI	GGATC	1 cut(s)	316
AlwNI	CAGNNNCTG	2 cut(s)	413, 607
AoxI	GGCC	2 cut(s)	163, 479
ApeKI	GCWGC	6 cut(s)	111, 114, 292, 725, 901, 948
ArsI	GACNNNNNNTTYG	2 cut(s)	540, 572
AspS9I	GGNCC	2 cut(s)	164, 655
AsuHPI	GGTGA	2 cut(s)	311, 396
AvaII	GGWCC	1 cut(s)	655
BaeGI	GKGCMC	1 cut(s)	667
BanII	GRGCYC	2 cut(s)	156, 920
BbsI	GAAGAC	1 cut(s)	932
Bbv12I	GWGCWC	4 cut(s)	156, 432, 912, 920
BbvI	GCAGC	6 cut(s)	123, 126, 304, 737, 888, 960
BccI	CCATC	4 cut(s)	7, 623, 647, 794
BcoDI	GTCTC	3 cut(s)	75, 216, 837
BfaI	CTAG	4 cut(s)	59, 72, 573, 821
BfmI	CTRYAG	1 cut(s)	414
BfuAI	ACCTGC	2 cut(s)	330, 541
BisI	GCNGC	6 cut(s)	112, 115, 293, 726, 902, 949
BlsI	GCNGC	6 cut(s)	113, 116, 294, 727, 903, 950
Bme18I	GGWCC	1 cut(s)	655
BmgT120I	GGNCC	2 cut(s)	164, 655
BmiI	GGNNCC	1 cut(s)	754
BmsI	GCATC	2 cut(s)	840, 954
BpiI	GAAGAC	1 cut(s)	932
BpmI	CTGGAG	1 cut(s)	468
Bpu10I	CCTNAGC	1 cut(s)	155
BpuEI	CTTGAG	2 cut(s)	170, 896
BsaJI	CCNNGG	2 cut(s)	118, 869
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 601
Bse1I	ACTGG	4 cut(s)	89, 185, 485, 584
BseDI	CCNNGG	2 cut(s)	118, 869
BseGI	GGATG	5 cut(s)	26, 634, 805, 855, 868
BseLI	CCNNNNNNNGG	2 cut(s)	295, 601
BseMII	CTCAG	5 cut(s)	147, 169, 227, 458, 673
BseNI	ACTGG	4 cut(s)	89, 185, 485, 584
BseRI	GAGGAG	6 cut(s)	50, 53, 118, 121, 152, 679
BseSI	GKGCMC	1 cut(s)	667
BseXI	GCAGC	6 cut(s)	123, 126, 304, 737, 888, 960
BseYI	CCCAGC	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	915
BshFI	GGCC	2 cut(s)	165, 481
BsiHKAI	GWGCWC	4 cut(s)	156, 432, 912, 920
BslFI	GGGAC	3 cut(s)	33, 202, 851
BslI	CCNNNNNNNGG	2 cut(s)	295, 601
BsmAI	GTCTC	3 cut(s)	75, 216, 837
BsmFI	GGGAC	3 cut(s)	33, 202, 851
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	2 cut(s)	165, 481
Bsp1286I	GDGCHC	5 cut(s)	156, 432, 667, 912, 920
Bsp1407I	TGTACA	1 cut(s)	23
Bsp143I	GATC	3 cut(s)	308, 491, 700
Bsp19I	CCATGG	2 cut(s)	118, 869
BspACI	CCGC	3 cut(s)	536, 595, 693
BspANI	GGCC	2 cut(s)	165, 481
BspCNI	CTCAG	5 cut(s)	146, 168, 226, 457, 672
BspLI	GGNNCC	1 cut(s)	754
BspMAI	CTGCAG	1 cut(s)	418
BspMI	ACCTGC	2 cut(s)	330, 541
BspPI	GGATC	1 cut(s)	316
BsrGI	TGTACA	1 cut(s)	23
BsrI	ACTGG	4 cut(s)	89, 185, 485, 584
BssECI	CCNNGG	2 cut(s)	118, 869
BssMI	GATC	3 cut(s)	308, 491, 700
BssT1I	CCWWGG	2 cut(s)	118, 869
Bst4CI	ACNGT	3 cut(s)	345, 892, 927
Bst6I	CTCTTC	3 cut(s)	713, 768, 890
BstAUI	TGTACA	1 cut(s)	23
BstC8I	GCNNGC	3 cut(s)	297, 514, 953
BstDEI	CTNAG	5 cut(s)	133, 155, 213, 444, 659
BstDSI	CCRYGG	2 cut(s)	118, 869
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	5 cut(s)	26, 634, 805, 855, 868
BstKTI	GATC	3 cut(s)	311, 494, 703
BstMAI	GTCTC	3 cut(s)	75, 216, 837
BstMBI	GATC	3 cut(s)	308, 491, 700
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 171, 422, 907
BstNSI	RCATGY	1 cut(s)	48
BstPI	GGTNACC	1 cut(s)	4
BstSFI	CTRYAG	1 cut(s)	414
BstSLI	GKGCMC	1 cut(s)	667
BstV1I	GCAGC	6 cut(s)	123, 126, 304, 737, 888, 960
BstV2I	GAAGAC	1 cut(s)	932
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	165, 481
BtgI	CCRYGG	2 cut(s)	118, 869
BtsCI	GGATG	5 cut(s)	26, 634, 805, 855, 868
BtsIMutI	CAGTG	1 cut(s)	667
BveI	ACCTGC	2 cut(s)	330, 541
Cac8I	GCNNGC	3 cut(s)	297, 514, 953
CaiI	CAGNNNCTG	2 cut(s)	413, 607
Cfr13I	GGNCC	2 cut(s)	164, 655
Csp6I	GTAC	2 cut(s)	24, 235
CviAII	CATG	7 cut(s)	45, 119, 171, 250, 625, 668, 870
CviQI	GTAC	2 cut(s)	24, 235
DdeI	CTNAG	5 cut(s)	133, 155, 213, 444, 659
DpnI	GATC	3 cut(s)	310, 493, 702
DpnII	GATC	3 cut(s)	308, 491, 700
Eam1104I	CTCTTC	3 cut(s)	713, 768, 890
EarI	CTCTTC	3 cut(s)	713, 768, 890
Ecl136II	GAGCTC	2 cut(s)	154, 918
Eco130I	CCWWGG	2 cut(s)	118, 869
Eco24I	GRGCYC	2 cut(s)	156, 920
Eco47I	GGWCC	1 cut(s)	655
Eco53kI	GAGCTC	2 cut(s)	154, 918
Eco91I	GGTNACC	1 cut(s)	4
EcoICRI	GAGCTC	2 cut(s)	154, 918
EcoO65I	GGTNACC	1 cut(s)	4
EcoT14I	CCWWGG	2 cut(s)	118, 869
EcoT38I	GRGCYC	2 cut(s)	156, 920
ErhI	CCWWGG	2 cut(s)	118, 869
FaeI	CATG	7 cut(s)	48, 122, 174, 253, 628, 671, 873
FaqI	GGGAC	3 cut(s)	33, 202, 851
FatI	CATG	7 cut(s)	44, 118, 170, 249, 624, 667, 869
FauI	CCCGC	1 cut(s)	602
FblI	GTMKAC	2 cut(s)	372, 887
Fnu4HI	GCNGC	6 cut(s)	112, 115, 293, 726, 902, 949
FokI	GGATG	5 cut(s)	33, 641, 812, 862, 875
FriOI	GRGCYC	2 cut(s)	156, 920
Fsp4HI	GCNGC	6 cut(s)	112, 115, 293, 726, 902, 949
FspBI	CTAG	4 cut(s)	59, 72, 573, 821
GluI	GCNGC	6 cut(s)	112, 115, 293, 726, 902, 949
GsaI	CCCAGC	1 cut(s)	55
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	2 cut(s)	165, 481
Hin1II	CATG	7 cut(s)	48, 122, 174, 253, 628, 671, 873
HincII	GTYRAC	2 cut(s)	331, 888
HindII	GTYRAC	2 cut(s)	331, 888
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	2 cut(s)	542, 737
HphI	GGTGA	2 cut(s)	311, 396
Hpy166II	GTNNAC	6 cut(s)	319, 331, 373, 581, 655, 888
Hpy188I	TCNGA	5 cut(s)	136, 447, 547, 644, 922
Hpy188III	TCNNGA	1 cut(s)	913
Hpy8I	GTNNAC	6 cut(s)	319, 331, 373, 581, 655, 888
HpyAV	CCTTC	5 cut(s)	25, 101, 230, 728, 833
HpyCH4III	ACNGT	3 cut(s)	345, 892, 927
HpyCH4V	TGCA	6 cut(s)	360, 379, 386, 416, 512, 932
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 171, 422, 907
HpyF3I	CTNAG	5 cut(s)	133, 155, 213, 444, 659
Hsp92II	CATG	7 cut(s)	48, 122, 174, 253, 628, 671, 873
Kzo9I	GATC	3 cut(s)	308, 491, 700
LmnI	GCTCC	4 cut(s)	60, 131, 435, 463
Lsp1109I	GCAGC	6 cut(s)	123, 126, 304, 737, 888, 960
LweI	GCATC	2 cut(s)	840, 954
MaeI	CTAG	4 cut(s)	59, 72, 573, 821
MaeIII	GTNAC	3 cut(s)	4, 345, 713
MalI	GATC	3 cut(s)	310, 493, 702
MboI	GATC	3 cut(s)	308, 491, 700
MboII	GAAGA	9 cut(s)	154, 234, 273, 657, 700, 785, 842, 907, 932
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	5 cut(s)	156, 432, 667, 912, 920
MluCI	AATT	3 cut(s)	66, 618, 969
MmeI	TCCRAC	3 cut(s)	282, 286, 360
MseI	TTAA	2 cut(s)	65, 621
MslI	CAYNNNNRTG	2 cut(s)	11, 425
MspA1I	CMGCKG	2 cut(s)	425, 695
Mva1269I	GAATGC	1 cut(s)	388
MwoI	GCNNNNNNNGC	4 cut(s)	123, 171, 422, 907
NcoI	CCATGG	2 cut(s)	118, 869
NdeII	GATC	3 cut(s)	308, 491, 700
NlaIII	CATG	7 cut(s)	48, 122, 174, 253, 628, 671, 873
NlaIV	GGNNCC	1 cut(s)	754
NmuCI	GTSAC	3 cut(s)	4, 345, 713
NspI	RCATGY	1 cut(s)	48
OliI	CACNNNNGTG	1 cut(s)	425
PaqCI	CACCTGC	1 cut(s)	330
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	2 cut(s)	542, 737
PflFI	GACNNNGTC	1 cut(s)	603
PkrI	GCNGC	6 cut(s)	113, 116, 294, 727, 903, 950
Psp124BI	GAGCTC	2 cut(s)	156, 920
PspEI	GGTNACC	1 cut(s)	4
PspFI	CCCAGC	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	754
PspPI	GGNCC	2 cut(s)	164, 655
PstI	CTGCAG	1 cut(s)	418
PstNI	CAGNNNCTG	2 cut(s)	413, 607
PsuI	RGATCY	1 cut(s)	308
PsyI	GACNNNGTC	1 cut(s)	603
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	25, 236
RsaNI	GTAC	2 cut(s)	24, 235
RseI	CAYNNNNRTG	2 cut(s)	11, 425
SacI	GAGCTC	2 cut(s)	156, 920
SalI	GTCGAC	1 cut(s)	886
SaqAI	TTAA	2 cut(s)	65, 621
SatI	GCNGC	6 cut(s)	112, 115, 293, 726, 902, 949
Sau3AI	GATC	3 cut(s)	308, 491, 700
Sau96I	GGNCC	2 cut(s)	164, 655
SduI	GDGCHC	5 cut(s)	156, 432, 667, 912, 920
SfaNI	GCATC	2 cut(s)	840, 954
SfcI	CTRYAG	1 cut(s)	414
SinI	GGWCC	1 cut(s)	655
SmiMI	CAYNNNNRTG	2 cut(s)	11, 425
SmlI	CTYRAG	2 cut(s)	149, 911
SmoI	CTYRAG	2 cut(s)	149, 911
Sse9I	AATT	3 cut(s)	66, 618, 969
SsiI	CCGC	3 cut(s)	536, 595, 693
SspMI	CTAG	4 cut(s)	59, 72, 573, 821
SstI	GAGCTC	2 cut(s)	156, 920
StyI	CCWWGG	2 cut(s)	118, 869
TaaI	ACNGT	3 cut(s)	345, 892, 927
TaqI	TCGA	4 cut(s)	490, 527, 699, 887
TasI	AATT	3 cut(s)	66, 618, 969
TatI	WGTACW	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	542, 737
Tru1I	TTAA	2 cut(s)	65, 621
Tru9I	TTAA	2 cut(s)	65, 621
TscAI	CASTG	1 cut(s)	667
TseFI	GTSAC	3 cut(s)	4, 345, 713
TseI	GCWGC	6 cut(s)	111, 114, 292, 725, 901, 948
Tsp45I	GTSAC	3 cut(s)	4, 345, 713
TspDTI	ATGAA	3 cut(s)	107, 843, 852
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	1 cut(s)	667
Tth111I	GACNNNGTC	1 cut(s)	603
VpaK11BI	GGWCC	1 cut(s)	655
XceI	RCATGY	1 cut(s)	48
XcmI	CCANNNNNNNNNTGG	1 cut(s)	177
XmiI	GTMKAC	2 cut(s)	372, 887
XspI	CTAG	4 cut(s)	59, 72, 573, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.