Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010805

Physical Location & Seq

Genomic Coordinates Reverse (-)

4137369 .. 4141973

Gene Structure 4605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G058600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAGGGATGTACACGAAATGAGGAGGCATGTCCACAACTGCTAGATTTGATCCCAAGAGAAAGAGATTGGATTGTGAAAAGAGATGAGAGAAGCCATGGCTCTTCAGAGGAGAAAAAGTTGGAGCTCAGGCTGGGGCCTCCAGGTGAAGACTGGTCTTTGAATGGTAACTCCAGAAGCAACAAAGAAAGAGATGAGTCTCTTCTCTCTCTTGGGTACTTTTCCCCTATGTCTTCCAACAACAACAACAACAACAACAACAACAACAACGTGAACCACCACCGAACCCAGAAATTTATCTCTCCCTCAGACAAGTCTGTTTTGTCCTCATCTCCATGGTCTTACCAGCTGGGAAATATTCATCAACATCAGACAAAAGTTCCATCTTTTCTTCACTTCACATCAAGTTCTCAGGGCCTGCCTGTTACCCCCAACAAAGCATCACAGCCCTGTTGCACTAAAGTGGTAGATTTGCAGAAAGCAGAAAAGAAAGTATTTTCACCAGCTTCTGCAAATACAGCTGTGCCCAACAGCTCTCAGAAAAGAACTGCTCCTGCTCCAGTTGTGGGTTGGCCTCCAATTCGTTCATTTAGGAAGAACCTTGCAAGCAACAGCTCTTCAAAGCCAACATCTGAGTCCCAAAATGTAGTCCCAAACAAGGTTCCTAATGGTACACAAGTTGAAACCAGCAGAAAAGGTCTATTTGTGAAAATTAACATGGATGGAGTTCCTATTGGAAGAAAAGTAGACCTCAGTGCCTGTGACAGCTATGAAAACCTCTCCTCTGCTGTTGATGAACTCTTCCGTGGCCTTCTGGCAGCTCAAAGAGATTCCTGTGCTGGTGGAACCCAGAACAAGCAAGAGGAAGAGAAAGAAATTACAGGTTTATTGGATGGAAGTGGGGAATATACTCTAGTATATGAAGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTCCCATGGAACATGTTTGTGTCTACTGTGAAGAGGCTGCGTGTGCTGAAGAGCTCTGAACTTTCTGCACTTTGTCTTCGTAACAGCAAACAAGGTAAGATGCCACCAAAATCTGCATTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006417 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

361

Amino Acids

39.74

Weight (kDa)

8.96

Isoelectric Point (pI)

58.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51950 AT3G16500 AT3G16500
fragaria_vesca	FvH4_6g32450 FvH4_6g32450
malus_domestica	MD09G1202300.v1.1 MD17G1183500.v1.1
prunus_persica	Prupe.3G058600_v2.0.a1
pyrus_communis	pycom09g11930 pycom17g19260
rosa_chinensis	RchiOBHm_Chr2g0140681
rosa_laevigata	RLG00000019891
rosa_multiflora	Rmu_sc0003342.1_g000011
rosa_roxburghii	Rroxscaffold_2G00104590
rosa_rugosa	Rorug02G0364000
rosa_samantha	Rh2AG415700 Rh2BG425200 Rh2CG401700 Rh2DG435200
rosa_wichuraiana	Rw2G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	747, 980
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	293
AcuI	CTGAAG	2 cut(s)	90, 1025
AfaI	GTAC	3 cut(s)	13, 218, 673
AfiI	CCNNNNNNNGG	2 cut(s)	566, 658
AflIII	ACRYGT	1 cut(s)	969
AgsI	TTSAA	4 cut(s)	163, 621, 683, 1078
AjnI	CCWGG	1 cut(s)	142
AleI	CACNNNNGTG	1 cut(s)	461
AluBI	AGCT	9 cut(s)	127, 349, 506, 521, 534, 615, 768, 821, 1011
AluI	AGCT	9 cut(s)	127, 349, 506, 521, 534, 615, 768, 821, 1011
Alw21I	GWGCWC	2 cut(s)	129, 1013
Alw26I	GTCTC	2 cut(s)	204, 930
AlwI	GGATC	1 cut(s)	46
AlwNI	CAGNNNCTG	3 cut(s)	418, 509, 759
AoxI	GGCC	4 cut(s)	137, 415, 572, 808
ApeKI	GCWGC	2 cut(s)	818, 994
ApoI	RAATTY	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	137, 415
AsuHPI	GGTGA	2 cut(s)	158, 492
BaeGI	GKGCMC	1 cut(s)	528
BaeI	ACNNNNGTAYC	2 cut(s)	663, 696
BanII	GRGCYC	2 cut(s)	129, 1013
BbsI	GAAGAC	3 cut(s)	156, 225, 1025
Bbv12I	GWGCWC	2 cut(s)	129, 1013
BbvI	GCAGC	2 cut(s)	830, 981
BccI	CCATC	3 cut(s)	391, 716, 887
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	2 cut(s)	204, 930
BfaI	CTAG	2 cut(s)	44, 914
BisI	GCNGC	2 cut(s)	819, 995
BlsI	GCNGC	2 cut(s)	820, 996
Bme1390I	CCNGG	1 cut(s)	144
BmgT120I	GGNCC	2 cut(s)	137, 415
BmiI	GGNNCC	3 cut(s)	138, 663, 847
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	3 cut(s)	449, 933, 1047
BpiI	GAAGAC	3 cut(s)	156, 225, 1025
BpmI	CTGGAG	3 cut(s)	126, 157, 543
Bpu10I	CCTNAGC	1 cut(s)	128
BsaJI	CCNNGG	4 cut(s)	97, 335, 805, 962
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	2 cut(s)	566, 658
Bse1I	ACTGG	2 cut(s)	158, 560
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	4 cut(s)	97, 335, 805, 962
BseGI	GGATG	5 cut(s)	14, 727, 898, 948, 961
BseLI	CCNNNNNNNGG	2 cut(s)	566, 658
BseMII	CTCAG	6 cut(s)	142, 321, 425, 551, 624, 766
BseNI	ACTGG	2 cut(s)	158, 560
BseRI	GAGGAG	3 cut(s)	38, 125, 772
BseSI	GKGCMC	1 cut(s)	528
BseXI	GCAGC	2 cut(s)	830, 981
BseYI	CCCAGC	2 cut(s)	133, 349
BsgI	GTGCAG	1 cut(s)	1008
BshFI	GGCC	4 cut(s)	139, 417, 574, 810
BsiHKAI	GWGCWC	2 cut(s)	129, 1013
BslFI	GGGAC	3 cut(s)	622, 635, 944
BslI	CCNNNNNNNGG	2 cut(s)	566, 658
BsmAI	GTCTC	2 cut(s)	204, 930
BsmFI	GGGAC	3 cut(s)	622, 635, 944
BsnI	GGCC	4 cut(s)	139, 417, 574, 810
Bsp1286I	GDGCHC	3 cut(s)	129, 528, 1013
Bsp1407I	TGTACA	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	51
Bsp19I	CCATGG	3 cut(s)	97, 335, 962
BspANI	GGCC	4 cut(s)	139, 417, 574, 810
BspCNI	CTCAG	6 cut(s)	141, 320, 424, 550, 625, 765
BspLI	GGNNCC	3 cut(s)	138, 663, 847
BspPI	GGATC	1 cut(s)	46
BspQI	GCTCTTC	3 cut(s)	109, 622, 1001
BsrGI	TGTACA	1 cut(s)	11
BsrI	ACTGG	2 cut(s)	158, 560
BssECI	CCNNGG	4 cut(s)	97, 335, 805, 962
BssMI	GATC	1 cut(s)	51
BssT1I	CCWWGG	3 cut(s)	97, 335, 962
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	985
Bst6I	CTCTTC	7 cut(s)	109, 207, 622, 806, 861, 983, 1001
BstAUI	TGTACA	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	419, 607
BstDEI	CTNAG	6 cut(s)	128, 307, 411, 537, 633, 752
BstDSI	CCRYGG	4 cut(s)	97, 335, 805, 962
BstF5I	GGATG	5 cut(s)	14, 727, 898, 948, 961
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	2 cut(s)	204, 930
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 1000
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	2 cut(s)	33, 973
BstSCI	CCNGG	1 cut(s)	142
BstSLI	GKGCMC	1 cut(s)	528
BstV1I	GCAGC	2 cut(s)	830, 981
BstV2I	GAAGAC	3 cut(s)	156, 225, 1025
BsuRI	GGCC	4 cut(s)	139, 417, 574, 810
BtgI	CCRYGG	4 cut(s)	97, 335, 805, 962
BtsCI	GGATG	5 cut(s)	14, 727, 898, 948, 961
BtsIMutI	CAGTG	1 cut(s)	760
Cac8I	GCNNGC	2 cut(s)	419, 607
CaiI	CAGNNNCTG	3 cut(s)	418, 509, 759
Cfr13I	GGNCC	2 cut(s)	137, 415
Csp6I	GTAC	3 cut(s)	12, 217, 672
CviAII	CATG	6 cut(s)	30, 98, 336, 718, 963, 970
CviQI	GTAC	3 cut(s)	12, 217, 672
DdeI	CTNAG	6 cut(s)	128, 307, 411, 537, 633, 752
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
Eam1104I	CTCTTC	7 cut(s)	109, 207, 622, 806, 861, 983, 1001
EarI	CTCTTC	7 cut(s)	109, 207, 622, 806, 861, 983, 1001
Ecl136II	GAGCTC	2 cut(s)	127, 1011
Eco130I	CCWWGG	3 cut(s)	97, 335, 962
Eco24I	GRGCYC	2 cut(s)	129, 1013
Eco53kI	GAGCTC	2 cut(s)	127, 1011
Eco57I	CTGAAG	2 cut(s)	90, 1025
EcoICRI	GAGCTC	2 cut(s)	127, 1011
EcoO109I	RGGNCCY	2 cut(s)	137, 415
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	3 cut(s)	97, 335, 962
EcoT38I	GRGCYC	2 cut(s)	129, 1013
ErhI	CCWWGG	3 cut(s)	97, 335, 962
FaeI	CATG	6 cut(s)	33, 101, 339, 721, 966, 973
FaqI	GGGAC	3 cut(s)	622, 635, 944
FatI	CATG	6 cut(s)	29, 97, 335, 717, 962, 969
FblI	GTMKAC	2 cut(s)	747, 980
Fnu4HI	GCNGC	2 cut(s)	819, 995
FokI	GGATG	5 cut(s)	21, 734, 905, 955, 968
FriOI	GRGCYC	2 cut(s)	129, 1013
Fsp4HI	GCNGC	2 cut(s)	819, 995
FspBI	CTAG	2 cut(s)	44, 914
GluI	GCNGC	2 cut(s)	819, 995
GsaI	CCCAGC	2 cut(s)	137, 353
GsuI	CTGGAG	3 cut(s)	126, 157, 543
HaeIII	GGCC	4 cut(s)	139, 417, 574, 810
Hin1II	CATG	6 cut(s)	33, 101, 339, 721, 966, 973
HinfI	GANTC	3 cut(s)	197, 635, 830
HphI	GGTGA	2 cut(s)	158, 492
Hpy166II	GTNNAC	6 cut(s)	14, 35, 274, 674, 748, 981
Hpy188I	TCNGA	6 cut(s)	109, 310, 372, 540, 634, 1015
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	6 cut(s)	14, 35, 274, 674, 748, 981
HpyAV	CCTTC	2 cut(s)	821, 926
HpyCH4III	ACNGT	1 cut(s)	985
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	6 cut(s)	456, 475, 512, 605, 1025, 1073
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 1000
HpyF3I	CTNAG	6 cut(s)	128, 307, 411, 537, 633, 752
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	6 cut(s)	33, 101, 339, 721, 966, 973
Kzo9I	GATC	1 cut(s)	51
LguI	GCTCTTC	3 cut(s)	109, 622, 1001
LmnI	GCTCC	3 cut(s)	124, 556, 562
Lsp1109I	GCAGC	2 cut(s)	830, 981
LweI	GCATC	3 cut(s)	449, 933, 1047
MaeI	CTAG	2 cut(s)	44, 914
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	4 cut(s)	167, 424, 761, 1037
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MhlI	GDGCHC	3 cut(s)	129, 528, 1013
MluCI	AATT	4 cut(s)	293, 579, 711, 876
MlyI	GAGTC	2 cut(s)	206, 644
MmeI	TCCRAC	2 cut(s)	102, 261
MseI	TTAA	1 cut(s)	714
MslI	CAYNNNNRTG	4 cut(s)	334, 461, 974, 1078
MspA1I	CMGCKG	2 cut(s)	349, 521
MspR9I	CCNGG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	518, 1000
NcoI	CCATGG	3 cut(s)	97, 335, 962
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	6 cut(s)	33, 101, 339, 721, 966, 973
NlaIV	GGNNCC	3 cut(s)	138, 663, 847
NmuCI	GTSAC	1 cut(s)	761
NspI	RCATGY	2 cut(s)	33, 973
OliI	CACNNNNGTG	1 cut(s)	461
PciI	ACATGT	1 cut(s)	969
PciSI	GCTCTTC	3 cut(s)	109, 622, 1001
PfeI	GAWTC	1 cut(s)	830
PkrI	GCNGC	2 cut(s)	820, 996
PleI	GAGTC	2 cut(s)	205, 643
PpsI	GAGTC	2 cut(s)	205, 643
PscI	ACATGT	1 cut(s)	969
Psp124BI	GAGCTC	2 cut(s)	129, 1013
Psp6I	CCWGG	1 cut(s)	142
PspFI	CCCAGC	2 cut(s)	133, 349
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	3 cut(s)	138, 663, 847
PspPI	GGNCC	2 cut(s)	137, 415
PstNI	CAGNNNCTG	3 cut(s)	418, 509, 759
PvuII	CAGCTG	2 cut(s)	349, 521
RsaI	GTAC	3 cut(s)	13, 218, 673
RsaNI	GTAC	3 cut(s)	12, 217, 672
RseI	CAYNNNNRTG	4 cut(s)	334, 461, 974, 1078
SacI	GAGCTC	2 cut(s)	129, 1013
SapI	GCTCTTC	3 cut(s)	109, 622, 1001
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	2 cut(s)	819, 995
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	2 cut(s)	137, 415
SchI	GAGTC	2 cut(s)	206, 644
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	3 cut(s)	129, 528, 1013
SfaNI	GCATC	3 cut(s)	449, 933, 1047
SmiMI	CAYNNNNRTG	4 cut(s)	334, 461, 974, 1078
Sse9I	AATT	4 cut(s)	293, 579, 711, 876
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	2 cut(s)	44, 914
SstI	GAGCTC	2 cut(s)	129, 1013
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	3 cut(s)	97, 335, 962
TaaI	ACNGT	1 cut(s)	985
TaiI	ACGT	1 cut(s)	273
TasI	AATT	4 cut(s)	293, 579, 711, 876
TatI	WGTACW	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	830
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TscAI	CASTG	1 cut(s)	760
TseFI	GTSAC	1 cut(s)	761
TseI	GCWGC	2 cut(s)	818, 994
Tsp45I	GTSAC	1 cut(s)	761
TspDTI	ATGAA	6 cut(s)	350, 576, 786, 810, 936, 945
TspGWI	ACGGA	1 cut(s)	794
TspRI	CASTG	1 cut(s)	760
XapI	RAATTY	1 cut(s)	293
XceI	RCATGY	2 cut(s)	33, 973
XcmI	CCANNNNNNNNNTGG	2 cut(s)	150, 567
XmiI	GTMKAC	2 cut(s)	747, 980
XspI	CTAG	2 cut(s)	44, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.