Rh2CG401700

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010805
Physical Location & Seq
Forward (+)
54648193 .. 54649884
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG401700.1

Sequence Viewer

Length: 900 bp
ATGCAAAAGATGAAGGAGGCATGTCCTCAACTTCTGGATTTGATTCCCAAAGAAAGAGAGTGGCTTGTGAGCAAAGATGAGAGCCATGGCTCTTCAGAAGAGAAGAAATTGGAGCTAAGGCTTGGTCCTCCAGGTCAAGACTGGTCAAATCTGAGAGACAACACCTCCAGAGGCCACAAAGAAAGAGATGAGTCTCTTCTTTCTCTTGGGTACTTCTACAACAGCAGCAGCAATGGAAACCAAACCCACCATTTTGCTTCCTCAGAGAGAAAGACTGTCCTGCCCTCTCCATGGTCAGGGTACCACCACAATCAGACAAAAGGTCCTTCCTTTCTTCAGTTCTCACCAAGCTCTCAGAACCTGCCTGTCACCAAGAAGGCGTCACATCCTTGTTGCACTAAAGCGGTAGACTTGCAGAGCGCAGAGAAGAAGAAAGCTTCTGCAAATCCAGCTGTGACCAACAACACTTCTCAGAAAAGAACTGCTCCTGCTCCAGTCGTGGGTTGGCCTCCAATTCGATCTTTTCGGAAGAATCTTGCGAGCACCAGCTCTTCAAAACCAGCACCTGAGTCACAAAATGTAGCCCCTAGCAAGGTTCCTAATGTTAAACCAGTCGAAACCAGCGGAAAAGGCCTGTTTGTGAAAATCAATATGGATGGAGTCCCCATTGGACGAAAAGTAGACCTCAGTGCTTATGCCAGCTACGAGAAGCTCTCCTCTGCTGTTGATGAACTCTTCCGTGGGCTCCTTGCAGGTAATGATCATAGTTCTATAGTTACTGTAGTGACTTTACCTATTGCAAATTGCTCCTGTTCTTTTTGGTTAGTAAAGAGAATTATTGAGTTCATAGGTCATGTTGGTTATATTCAACATCTAGTTCATGTTTCAACTATTAATTGA

Protein Analysis

299

Amino Acids

32.85

Weight (kDa)

9.41

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 37 - 255 1.2e-37 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51950 AT3G16500 AT3G16500
fragaria_vesca FvH4_6g32450 FvH4_6g32450
malus_domestica MD09G1202300.v1.1 MD17G1183500.v1.1
prunus_persica Prupe.3G058600_v2.0.a1
pyrus_communis pycom09g11930 pycom17g19260
rosa_chinensis RchiOBHm_Chr2g0140681
rosa_laevigata RLG00000019891
rosa_multiflora Rmu_sc0003342.1_g000011
rosa_roxburghii Rroxscaffold_2G00104590
rosa_rugosa Rorug02G0364000
rosa_samantha Rh2AG415700 Rh2BG425200 Rh2CG401700 Rh2DG435200
rosa_wichuraiana Rw2G034010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 369, 743
Acc65I GGTACC 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 300
AccI GTMKAC 2 cut(s) 408, 681
AciI CCGC 2 cut(s) 404, 624
AcuI CTGAAG 2 cut(s) 78, 320
AcyI GRCGYC 1 cut(s) 380
AfaI GTAC 2 cut(s) 212, 302
AfiI CCNNNNNNNGG 4 cut(s) 291, 296, 500, 592
AgsI TTSAA 3 cut(s) 555, 869, 888
AhdI GACNNNNNGTC 1 cut(s) 321
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 7 cut(s) 115, 351, 437, 452, 549, 702, 712
AluI AGCT 7 cut(s) 115, 351, 437, 452, 549, 702, 712
Alw21I GWGCWC 1 cut(s) 545
Alw26I GTCTC 2 cut(s) 150, 198
AlwNI CAGNNNCTG 2 cut(s) 361, 566
AoxI GGCC 3 cut(s) 172, 506, 631
ApeKI GCWGC 2 cut(s) 225, 228
AseI ATTAAT 1 cut(s) 894
Asp718I GGTACC 1 cut(s) 300
AspLEI GCGC 1 cut(s) 422
AspS9I GGNCC 2 cut(s) 125, 323
AsuHPI GGTGA 2 cut(s) 336, 361
AvaII GGWCC 2 cut(s) 125, 323
BanI GGYRCC 1 cut(s) 300
BanII GRGCYC 1 cut(s) 747
Bbv12I GWGCWC 1 cut(s) 545
BbvI GCAGC 2 cut(s) 237, 240
BccI CCATC 1 cut(s) 650
BciT130I CCWGG 1 cut(s) 132
BclI TGATCA 1 cut(s) 760
BcoDI GTCTC 2 cut(s) 150, 198
BfaI CTAG 2 cut(s) 588, 875
BfmI CTRYAG 2 cut(s) 771, 780
BfuAI ACCTGC 2 cut(s) 369, 743
BisI GCNGC 2 cut(s) 226, 229
BlsI GCNGC 2 cut(s) 227, 230
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 2 cut(s) 125, 323
BmeRI GACNNNNNGTC 1 cut(s) 321
BmgT120I GGNCC 2 cut(s) 125, 323
BmiI GGNNCC 3 cut(s) 302, 597, 746
BmrFI CCNGG 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 698, 730
BpmI CTGGAG 3 cut(s) 114, 151, 477
Bpu10I CCTNAGC 1 cut(s) 116
BsaHI GRCGYC 1 cut(s) 380
BsaJI CCNNGG 3 cut(s) 85, 290, 739
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 4 cut(s) 291, 296, 500, 592
Bse1I ACTGG 3 cut(s) 146, 494, 611
Bse3DI GCAATG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 3 cut(s) 85, 290, 739
BseGI GGATG 2 cut(s) 385, 661
BseLI CCNNNNNNNGG 4 cut(s) 291, 296, 500, 592
BseMI GCAATG 1 cut(s) 238
BseMII CTCAG 6 cut(s) 143, 276, 368, 485, 558, 700
BseNI ACTGG 3 cut(s) 146, 494, 611
BseRI GAGGAG 1 cut(s) 706
BseXI GCAGC 2 cut(s) 237, 240
BshFI GGCC 3 cut(s) 174, 508, 633
BshNI GGYRCC 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 545
BslFI GGGAC 1 cut(s) 647
BslI CCNNNNNNNGG 4 cut(s) 291, 296, 500, 592
BsmAI GTCTC 2 cut(s) 150, 198
BsmFI GGGAC 1 cut(s) 647
BsnI GGCC 3 cut(s) 174, 508, 633
Bsp1286I GDGCHC 2 cut(s) 545, 747
Bsp143I GATC 2 cut(s) 518, 760
Bsp19I CCATGG 2 cut(s) 85, 290
BspACI CCGC 2 cut(s) 404, 624
BspANI GGCC 3 cut(s) 174, 508, 633
BspCNI CTCAG 6 cut(s) 144, 275, 367, 484, 559, 699
BspLI GGNNCC 3 cut(s) 302, 597, 746
BspMI ACCTGC 2 cut(s) 369, 743
BspQI GCTCTTC 2 cut(s) 97, 556
BspT107I GGYRCC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 238
BsrI ACTGG 3 cut(s) 146, 494, 611
BssECI CCNNGG 3 cut(s) 85, 290, 739
BssMI GATC 2 cut(s) 518, 760
BssNI GRCGYC 1 cut(s) 380
BssT1I CCWWGG 2 cut(s) 85, 290
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 277, 781
Bst6I CTCTTC 5 cut(s) 93, 97, 201, 556, 740
BstACI GRCGYC 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 541, 700
BstDEI CTNAG 7 cut(s) 116, 152, 262, 354, 471, 567, 686
BstDSI CCRYGG 3 cut(s) 85, 290, 739
BstF5I GGATG 2 cut(s) 385, 661
BstHHI GCGC 1 cut(s) 422
BstKTI GATC 2 cut(s) 521, 763
BstMAI GTCTC 2 cut(s) 150, 198
BstMBI GATC 2 cut(s) 518, 760
BstMWI GCNNNNNNNGC 2 cut(s) 449, 630
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 2 cut(s) 771, 780
BstV1I GCAGC 2 cut(s) 237, 240
BsuRI GGCC 3 cut(s) 174, 508, 633
BtgI CCRYGG 3 cut(s) 85, 290, 739
BtsCI GGATG 2 cut(s) 385, 661
BtsIMutI CAGTG 1 cut(s) 694
BveI ACCTGC 2 cut(s) 369, 743
Cac8I GCNNGC 2 cut(s) 541, 700
CaiI CAGNNNCTG 2 cut(s) 361, 566
CfoI GCGC 1 cut(s) 422
Cfr13I GGNCC 2 cut(s) 125, 323
CseI GACGC 1 cut(s) 369
Csp6I GTAC 2 cut(s) 211, 301
CviAII CATG 5 cut(s) 21, 86, 291, 854, 881
CviQI GTAC 2 cut(s) 211, 301
DdeI CTNAG 7 cut(s) 116, 152, 262, 354, 471, 567, 686
DpnI GATC 2 cut(s) 520, 762
DpnII GATC 2 cut(s) 518, 760
DriI GACNNNNNGTC 1 cut(s) 321
Eam1104I CTCTTC 5 cut(s) 93, 97, 201, 556, 740
Eam1105I GACNNNNNGTC 1 cut(s) 321
EarI CTCTTC 5 cut(s) 93, 97, 201, 556, 740
Eco130I CCWWGG 2 cut(s) 85, 290
Eco147I AGGCCT 1 cut(s) 633
Eco24I GRGCYC 1 cut(s) 747
Eco47I GGWCC 2 cut(s) 125, 323
Eco57I CTGAAG 2 cut(s) 78, 320
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 2 cut(s) 85, 290
EcoT38I GRGCYC 1 cut(s) 747
ErhI CCWWGG 2 cut(s) 85, 290
FaeI CATG 5 cut(s) 24, 89, 294, 857, 884
FaqI GGGAC 1 cut(s) 647
FatI CATG 5 cut(s) 20, 85, 290, 853, 880
FbaI TGATCA 1 cut(s) 760
FblI GTMKAC 2 cut(s) 408, 681
Fnu4HI GCNGC 2 cut(s) 226, 229
FokI GGATG 2 cut(s) 372, 668
FriOI GRGCYC 1 cut(s) 747
Fsp4HI GCNGC 2 cut(s) 226, 229
FspBI CTAG 2 cut(s) 588, 875
GlaI GCGC 1 cut(s) 421
GluI GCNGC 2 cut(s) 226, 229
GsuI CTGGAG 3 cut(s) 114, 151, 477
HaeIII GGCC 3 cut(s) 174, 508, 633
HgaI GACGC 1 cut(s) 369
HhaI GCGC 1 cut(s) 422
Hin1I GRCGYC 1 cut(s) 380
Hin1II CATG 5 cut(s) 24, 89, 294, 857, 884
Hin6I GCGC 1 cut(s) 420
HinP1I GCGC 1 cut(s) 420
HindIII AAGCTT 1 cut(s) 435
HinfI GANTC 5 cut(s) 43, 191, 532, 569, 660
HphI GGTGA 2 cut(s) 336, 361
Hpy166II GTNNAC 2 cut(s) 409, 682
Hpy188I TCNGA 7 cut(s) 97, 153, 265, 315, 357, 474, 528
Hpy188III TCNNGA 3 cut(s) 35, 137, 168
Hpy8I GTNNAC 2 cut(s) 409, 682
HpyAV CCTTC 3 cut(s) 7, 336, 370
HpyCH4III ACNGT 2 cut(s) 277, 781
HpyCH4V TGCA 6 cut(s) 4, 396, 415, 443, 752, 800
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 630
HpyF3I CTNAG 7 cut(s) 116, 152, 262, 354, 471, 567, 686
Hsp92I GRCGYC 1 cut(s) 380
Hsp92II CATG 5 cut(s) 24, 89, 294, 857, 884
HspAI GCGC 1 cut(s) 420
KpnI GGTACC 1 cut(s) 304
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 2 cut(s) 518, 760
LguI GCTCTTC 2 cut(s) 97, 556
LmnI GCTCC 5 cut(s) 112, 490, 496, 750, 812
Lsp1109I GCAGC 2 cut(s) 237, 240
MaeI CTAG 2 cut(s) 588, 875
MaeIII GTNAC 6 cut(s) 367, 381, 454, 570, 775, 784
MalI GATC 2 cut(s) 520, 762
MboI GATC 2 cut(s) 518, 760
MhlI GDGCHC 2 cut(s) 545, 747
MluCI AATT 5 cut(s) 107, 513, 802, 834, 895
MlyI GAGTC 3 cut(s) 200, 578, 669
MseI TTAA 2 cut(s) 606, 894
MspA1I CMGCKG 2 cut(s) 452, 624
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 449, 630
NcoI CCATGG 2 cut(s) 85, 290
NdeII GATC 2 cut(s) 518, 760
NlaIII CATG 5 cut(s) 24, 89, 294, 857, 884
NlaIV GGNNCC 3 cut(s) 302, 597, 746
NmuCI GTSAC 5 cut(s) 367, 381, 454, 570, 784
NspI RCATGY 1 cut(s) 24
PceI AGGCCT 1 cut(s) 633
PciSI GCTCTTC 2 cut(s) 97, 556
PfeI GAWTC 2 cut(s) 43, 532
PkrI GCNGC 2 cut(s) 227, 230
PleI GAGTC 3 cut(s) 199, 577, 668
PpsI GAGTC 3 cut(s) 199, 577, 668
PpuMI RGGWCCY 1 cut(s) 323
PshBI ATTAAT 1 cut(s) 894
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 3 cut(s) 302, 597, 746
PspPI GGNCC 2 cut(s) 125, 323
PspPPI RGGWCCY 1 cut(s) 323
PstNI CAGNNNCTG 2 cut(s) 361, 566
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 2 cut(s) 212, 302
RsaNI GTAC 2 cut(s) 211, 301
SapI GCTCTTC 2 cut(s) 97, 556
SaqAI TTAA 2 cut(s) 606, 894
SatI GCNGC 2 cut(s) 226, 229
Sau3AI GATC 2 cut(s) 518, 760
Sau96I GGNCC 2 cut(s) 125, 323
SchI GAGTC 3 cut(s) 200, 578, 669
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 2 cut(s) 545, 747
SfcI CTRYAG 2 cut(s) 771, 780
SinI GGWCC 2 cut(s) 125, 323
Sse9I AATT 5 cut(s) 107, 513, 802, 834, 895
SseBI AGGCCT 1 cut(s) 633
SsiI CCGC 2 cut(s) 404, 624
SspMI CTAG 2 cut(s) 588, 875
StuI AGGCCT 1 cut(s) 633
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 2 cut(s) 85, 290
TaaI ACNGT 2 cut(s) 277, 781
TaqI TCGA 2 cut(s) 517, 615
TasI AATT 5 cut(s) 107, 513, 802, 834, 895
TfiI GAWTC 2 cut(s) 43, 532
Tru1I TTAA 2 cut(s) 606, 894
Tru9I TTAA 2 cut(s) 606, 894
TscAI CASTG 1 cut(s) 694
TseFI GTSAC 5 cut(s) 367, 381, 454, 570, 784
TseI GCWGC 2 cut(s) 225, 228
Tsp45I GTSAC 5 cut(s) 367, 381, 454, 570, 784
TspDTI ATGAA 4 cut(s) 26, 744, 835, 869
TspGWI ACGGA 1 cut(s) 728
TspRI CASTG 1 cut(s) 694
VpaK11BI GGWCC 2 cut(s) 125, 323
VspI ATTAAT 1 cut(s) 894
XceI RCATGY 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 2 cut(s) 138, 501
XmiI GTMKAC 2 cut(s) 408, 681
XspI CTAG 2 cut(s) 588, 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.