RLG00000019891

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010805
Physical Location & Seq
Forward (+)
58199344 .. 58202528
3185 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019891

Sequence Viewer

Length: 999 bp
ATGGAGGAGGGATGTCCTCAACTTCTGGATTTGATTCCCAAAGAAAGAGAGTGGCTTGTGAGCAAAGATGAGAACCATGGCTCTTCAGAAGAAAAGAAATTGGAGCTAAGGCTTGGTCCTCCAGGTCAAGACTGGTCAAATCTGAGAGACAACAGCTCCAGAGGCCACAAAGAAAGAGGTGAGTCTCTTCTGTCTCTTGGGTACTTCTACAACAACAGCAGCAATGGAAACCAAACCCACCATTTTGCTTCCTCAGAGAGAAAGACTGTTCTGCCCTCTCCGTGGTCTTCTTCTCCCTCAGGGTACCACCACAACCAGACAAAAGGTCCTTCCTTTCTTCAGTTCTCACCAAGCTCTCAGAGCCTGCCTGTCACCCAGAAGGCGTCACATCCCTGTTGCACTAAAGCGGTAGACTTGCAGAGCGCAGAGAAGAAGAAAGCTTCTGCAAATCCAGCTGTGACCAACAACACTTCTCAGAAAAGAACTGCTCCTGCTCCAGTTGTGGGTTGGCCTCCAATTCGATCTTTTCGGAAGAATCTTGCGAGCACCAGCTCTTCAAAACCAGCACCTGAGTCACAAAATGTAGCCCCTAGCAAGGTTCCTAATGTTAAACCAGTCGAAGCCAGCGGAAAAGGCATATTTGTGAAAATCAATATGGATGGAGTCCCCATTGGACGAAAAGTAGACCTCAGTGCTTATGCCAGCTATGAAAAGCTCTCCTCTGCTGTTGATGAACTCTTCCGTGGGCTCCTTGCAGCTCAAAGAGATTCTTGTGCTGGTGGAATCAAGAACAAGATAGAAGAAGAGAAAGAAATTACAGGTTTATTGGATGGAAGTGGAGAATATACTCTCGTATATGAAGATAATGAGGGTGACAGGATGCTTGTTGGGGATGTCCCATGGCACATGTTTGTGTCTACTGTGAAGAGGTTGCGTGTGCTCAAGAGCTCTGAACTTTCTGCACTTAATATTCGCAGCGGTAAAGAACTGAAGATCTGA

Protein Analysis

333

Amino Acids

36.34

Weight (kDa)

8.98

Isoelectric Point (pI)

53.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 34 - 323 9.6e-69 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51950 AT3G16500 AT3G16500
fragaria_vesca FvH4_6g32450 FvH4_6g32450
malus_domestica MD09G1202300.v1.1 MD17G1183500.v1.1
prunus_persica Prupe.3G058600_v2.0.a1
pyrus_communis pycom09g11930 pycom17g19260
rosa_chinensis RchiOBHm_Chr2g0140681
rosa_laevigata RLG00000019891
rosa_multiflora Rmu_sc0003342.1_g000011
rosa_roxburghii Rroxscaffold_2G00104590
rosa_rugosa Rorug02G0364000
rosa_samantha Rh2AG415700 Rh2BG425200 Rh2CG401700 Rh2DG435200
rosa_wichuraiana Rw2G034010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 303
AccB1I GGYRCC 1 cut(s) 303
AccI GTMKAC 3 cut(s) 411, 684, 917
AciI CCGC 3 cut(s) 407, 627, 978
AcuI CTGAAG 2 cut(s) 69, 323
AcyI GRCGYC 1 cut(s) 383
AfaI GTAC 2 cut(s) 203, 305
AfiI CCNNNNNNNGG 3 cut(s) 282, 503, 595
AflIII ACRYGT 1 cut(s) 906
AgsI TTSAA 1 cut(s) 558
AhdI GACNNNNNGTC 1 cut(s) 324
AjnI CCWGG 1 cut(s) 121
Alw21I GWGCWC 3 cut(s) 548, 942, 950
Alw26I GTCTC 3 cut(s) 141, 189, 198
AlwNI CAGNNNCTG 2 cut(s) 364, 569
AoxI GGCC 2 cut(s) 163, 509
ApeKI GCWGC 3 cut(s) 219, 755, 975
Asp718I GGTACC 1 cut(s) 303
AspLEI GCGC 1 cut(s) 425
AspS9I GGNCC 2 cut(s) 116, 326
AsuHPI GGTGA 4 cut(s) 191, 339, 364, 884
AvaII GGWCC 2 cut(s) 116, 326
AxyI CCTNAGG 1 cut(s) 298
BanI GGYRCC 1 cut(s) 303
BanII GRGCYC 2 cut(s) 750, 950
BbsI GAAGAC 1 cut(s) 279
Bbv12I GWGCWC 3 cut(s) 548, 942, 950
BbvI GCAGC 3 cut(s) 231, 767, 987
BccI CCATC 2 cut(s) 653, 824
BciT130I CCWGG 1 cut(s) 123
BcoDI GTCTC 3 cut(s) 141, 189, 198
BfaI CTAG 1 cut(s) 591
BglII AGATCT 1 cut(s) 993
BisI GCNGC 3 cut(s) 220, 756, 976
BlsI GCNGC 3 cut(s) 221, 757, 977
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 2 cut(s) 116, 326
BmeRI GACNNNNNGTC 1 cut(s) 324
BmgT120I GGNCC 2 cut(s) 116, 326
BmiI GGNNCC 3 cut(s) 305, 600, 749
BmrFI CCNGG 1 cut(s) 123
BmsI GCATC 1 cut(s) 870
BpiI GAAGAC 1 cut(s) 279
BpmI CTGGAG 3 cut(s) 105, 142, 480
Bpu10I CCTNAGC 1 cut(s) 107
BpuEI CTTGAG 1 cut(s) 926
BsaHI GRCGYC 1 cut(s) 383
BsaJI CCNNGG 4 cut(s) 76, 281, 742, 899
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 3 cut(s) 282, 503, 595
Bse1I ACTGG 3 cut(s) 137, 497, 614
Bse21I CCTNAGG 1 cut(s) 298
Bse3DI GCAATG 1 cut(s) 229
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 4 cut(s) 76, 281, 742, 899
BseGI GGATG 6 cut(s) 17, 388, 664, 835, 885, 898
BseLI CCNNNNNNNGG 3 cut(s) 282, 503, 595
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 7 cut(s) 134, 267, 312, 371, 488, 561, 703
BseNI ACTGG 3 cut(s) 137, 497, 614
BseRI GAGGAG 2 cut(s) 20, 709
BseXI GCAGC 3 cut(s) 231, 767, 987
BsgI GTGCAG 1 cut(s) 945
BshFI GGCC 2 cut(s) 165, 511
BshNI GGYRCC 1 cut(s) 303
BsiHKAI GWGCWC 3 cut(s) 548, 942, 950
BslFI GGGAC 2 cut(s) 650, 881
BslI CCNNNNNNNGG 3 cut(s) 282, 503, 595
BsmAI GTCTC 3 cut(s) 141, 189, 198
BsmFI GGGAC 2 cut(s) 650, 881
BsnI GGCC 2 cut(s) 165, 511
Bsp1286I GDGCHC 4 cut(s) 548, 750, 942, 950
Bsp143I GATC 2 cut(s) 521, 993
Bsp19I CCATGG 2 cut(s) 76, 899
BspACI CCGC 3 cut(s) 407, 627, 978
BspANI GGCC 2 cut(s) 165, 511
BspCNI CTCAG 7 cut(s) 135, 266, 311, 370, 487, 562, 702
BspLI GGNNCC 3 cut(s) 305, 600, 749
BspQI GCTCTTC 2 cut(s) 88, 559
BspT107I GGYRCC 1 cut(s) 303
BsrDI GCAATG 1 cut(s) 229
BsrI ACTGG 3 cut(s) 137, 497, 614
BssECI CCNNGG 4 cut(s) 76, 281, 742, 899
BssMI GATC 2 cut(s) 521, 993
BssNI GRCGYC 1 cut(s) 383
BssT1I CCWWGG 2 cut(s) 76, 899
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 268, 922
Bst6I CTCTTC 6 cut(s) 88, 192, 559, 743, 798, 920
BstACI GRCGYC 1 cut(s) 383
BstC8I GCNNGC 4 cut(s) 365, 544, 625, 703
BstDEI CTNAG 8 cut(s) 107, 143, 253, 298, 357, 474, 570, 689
BstDSI CCRYGG 4 cut(s) 76, 281, 742, 899
BstF5I GGATG 6 cut(s) 17, 388, 664, 835, 885, 898
BstHHI GCGC 1 cut(s) 425
BstKTI GATC 2 cut(s) 524, 996
BstMAI GTCTC 3 cut(s) 141, 189, 198
BstMBI GATC 2 cut(s) 521, 993
BstMWI GCNNNNNNNGC 4 cut(s) 162, 360, 452, 633
BstNI CCWGG 1 cut(s) 123
BstNSI RCATGY 1 cut(s) 910
BstSCI CCNGG 1 cut(s) 121
BstV1I GCAGC 3 cut(s) 231, 767, 987
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 993
BstYI RGATCY 1 cut(s) 993
Bsu36I CCTNAGG 1 cut(s) 298
BsuRI GGCC 2 cut(s) 165, 511
BtgI CCRYGG 4 cut(s) 76, 281, 742, 899
BtsCI GGATG 6 cut(s) 17, 388, 664, 835, 885, 898
BtsIMutI CAGTG 1 cut(s) 697
Cac8I GCNNGC 4 cut(s) 365, 544, 625, 703
CaiI CAGNNNCTG 2 cut(s) 364, 569
CfoI GCGC 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 116, 326
CseI GACGC 1 cut(s) 372
Csp6I GTAC 2 cut(s) 202, 304
CviAII CATG 3 cut(s) 77, 900, 907
CviQI GTAC 2 cut(s) 202, 304
DdeI CTNAG 8 cut(s) 107, 143, 253, 298, 357, 474, 570, 689
DpnI GATC 2 cut(s) 523, 995
DpnII GATC 2 cut(s) 521, 993
DriI GACNNNNNGTC 1 cut(s) 324
Eam1104I CTCTTC 6 cut(s) 88, 192, 559, 743, 798, 920
Eam1105I GACNNNNNGTC 1 cut(s) 324
EarI CTCTTC 6 cut(s) 88, 192, 559, 743, 798, 920
Ecl136II GAGCTC 1 cut(s) 948
Eco130I CCWWGG 2 cut(s) 76, 899
Eco24I GRGCYC 2 cut(s) 750, 950
Eco47I GGWCC 2 cut(s) 116, 326
Eco53kI GAGCTC 1 cut(s) 948
Eco57I CTGAAG 2 cut(s) 69, 323
Eco81I CCTNAGG 1 cut(s) 298
EcoICRI GAGCTC 1 cut(s) 948
EcoO109I RGGNCCY 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 76, 899
EcoT38I GRGCYC 2 cut(s) 750, 950
ErhI CCWWGG 2 cut(s) 76, 899
FaeI CATG 3 cut(s) 80, 903, 910
FalI AAGNNNNNCTT 2 cut(s) 754, 786
FaqI GGGAC 2 cut(s) 650, 881
FatI CATG 3 cut(s) 76, 899, 906
FblI GTMKAC 3 cut(s) 411, 684, 917
Fnu4HI GCNGC 3 cut(s) 220, 756, 976
FokI GGATG 6 cut(s) 24, 375, 671, 842, 892, 905
FriOI GRGCYC 2 cut(s) 750, 950
Fsp4HI GCNGC 3 cut(s) 220, 756, 976
FspBI CTAG 1 cut(s) 591
GlaI GCGC 1 cut(s) 424
GluI GCNGC 3 cut(s) 220, 756, 976
GsuI CTGGAG 3 cut(s) 105, 142, 480
HaeIII GGCC 2 cut(s) 165, 511
HgaI GACGC 1 cut(s) 372
HhaI GCGC 1 cut(s) 425
Hin1I GRCGYC 1 cut(s) 383
Hin1II CATG 3 cut(s) 80, 903, 910
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HindIII AAGCTT 1 cut(s) 438
HinfI GANTC 7 cut(s) 34, 182, 535, 572, 663, 767, 783
HphI GGTGA 4 cut(s) 191, 339, 364, 884
Hpy166II GTNNAC 3 cut(s) 412, 685, 918
Hpy188I TCNGA 8 cut(s) 88, 144, 256, 360, 477, 531, 952, 998
Hpy188III TCNNGA 5 cut(s) 26, 128, 159, 787, 943
Hpy8I GTNNAC 3 cut(s) 412, 685, 918
HpyAV CCTTC 2 cut(s) 339, 373
HpyCH4III ACNGT 2 cut(s) 268, 922
HpyCH4V TGCA 5 cut(s) 399, 418, 446, 755, 962
HpyF10VI GCNNNNNNNGC 4 cut(s) 162, 360, 452, 633
HpyF3I CTNAG 8 cut(s) 107, 143, 253, 298, 357, 474, 570, 689
Hsp92I GRCGYC 1 cut(s) 383
Hsp92II CATG 3 cut(s) 80, 903, 910
HspAI GCGC 1 cut(s) 423
KpnI GGTACC 1 cut(s) 307
Kzo9I GATC 2 cut(s) 521, 993
LguI GCTCTTC 2 cut(s) 88, 559
LmnI GCTCC 5 cut(s) 103, 161, 493, 499, 753
Lsp1109I GCAGC 3 cut(s) 231, 767, 987
LweI GCATC 1 cut(s) 870
MaeI CTAG 1 cut(s) 591
MaeIII GTNAC 5 cut(s) 370, 384, 457, 573, 872
MalI GATC 2 cut(s) 523, 995
MboI GATC 2 cut(s) 521, 993
MflI RGATCY 1 cut(s) 993
MhlI GDGCHC 4 cut(s) 548, 750, 942, 950
MluCI AATT 3 cut(s) 98, 516, 813
MlyI GAGTC 3 cut(s) 191, 581, 672
MseI TTAA 2 cut(s) 609, 966
MslI CAYNNNNRTG 2 cut(s) 641, 911
MspA1I CMGCKG 3 cut(s) 455, 627, 978
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 4 cut(s) 162, 360, 452, 633
NcoI CCATGG 2 cut(s) 76, 899
NdeII GATC 2 cut(s) 521, 993
NlaIII CATG 3 cut(s) 80, 903, 910
NlaIV GGNNCC 3 cut(s) 305, 600, 749
NmuCI GTSAC 5 cut(s) 370, 384, 457, 573, 872
NspI RCATGY 1 cut(s) 910
PciI ACATGT 1 cut(s) 906
PciSI GCTCTTC 2 cut(s) 88, 559
PfeI GAWTC 4 cut(s) 34, 535, 767, 783
PkrI GCNGC 3 cut(s) 221, 757, 977
PleI GAGTC 3 cut(s) 190, 580, 671
PpsI GAGTC 3 cut(s) 190, 580, 671
PpuMI RGGWCCY 1 cut(s) 326
PscI ACATGT 1 cut(s) 906
Psp124BI GAGCTC 1 cut(s) 950
Psp5II RGGWCCY 1 cut(s) 326
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 3 cut(s) 305, 600, 749
PspPI GGNCC 2 cut(s) 116, 326
PspPPI RGGWCCY 1 cut(s) 326
PstNI CAGNNNCTG 2 cut(s) 364, 569
PsuI RGATCY 1 cut(s) 993
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 2 cut(s) 203, 305
RsaNI GTAC 2 cut(s) 202, 304
RseI CAYNNNNRTG 2 cut(s) 641, 911
SacI GAGCTC 1 cut(s) 950
SapI GCTCTTC 2 cut(s) 88, 559
SaqAI TTAA 2 cut(s) 609, 966
SatI GCNGC 3 cut(s) 220, 756, 976
Sau3AI GATC 2 cut(s) 521, 993
Sau96I GGNCC 2 cut(s) 116, 326
SchI GAGTC 3 cut(s) 191, 581, 672
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 4 cut(s) 548, 750, 942, 950
SfaNI GCATC 1 cut(s) 870
SinI GGWCC 2 cut(s) 116, 326
SmiMI CAYNNNNRTG 2 cut(s) 641, 911
SmlI CTYRAG 1 cut(s) 941
SmoI CTYRAG 1 cut(s) 941
Sse9I AATT 3 cut(s) 98, 516, 813
SsiI CCGC 3 cut(s) 407, 627, 978
SspI AATATT 1 cut(s) 970
SspMI CTAG 1 cut(s) 591
SstI GAGCTC 1 cut(s) 950
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 2 cut(s) 76, 899
TaaI ACNGT 2 cut(s) 268, 922
TaqI TCGA 2 cut(s) 520, 618
TasI AATT 3 cut(s) 98, 516, 813
TfiI GAWTC 4 cut(s) 34, 535, 767, 783
Tru1I TTAA 2 cut(s) 609, 966
Tru9I TTAA 2 cut(s) 609, 966
TscAI CASTG 1 cut(s) 697
TseFI GTSAC 5 cut(s) 370, 384, 457, 573, 872
TseI GCWGC 3 cut(s) 219, 755, 975
Tsp45I GTSAC 5 cut(s) 370, 384, 457, 573, 872
TspDTI ATGAA 3 cut(s) 723, 747, 873
TspGWI ACGGA 2 cut(s) 270, 731
TspRI CASTG 1 cut(s) 697
VpaK11BI GGWCC 2 cut(s) 116, 326
XceI RCATGY 1 cut(s) 910
XcmI CCANNNNNNNNNTGG 2 cut(s) 129, 504
XmiI GTMKAC 3 cut(s) 411, 684, 917
XspI CTAG 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.