Rorug02G0364000

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010805
Physical Location & Seq
Reverse (-)
46173330 .. 46174037
708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0364000.1

Sequence Viewer

Length: 708 bp
ATGTCCCTTTCAAGCTGGCTTTGCACTAAGAGCACCAAGAACATGCTCGTAAAAATTGTTCACCCCGGCGGCCACGTGGAACTTCACGATTGTACTGTTCTTGCTGCAGAGCTCATGCATCGGAATCCAAGATGTTGTGTTGCCTATCCACAGATCTTCCAGCAGCCGTGGGCAATCGTTGCACCGGACACCATGCTACAGCTAGGCCAGAAGTACTATGTCGTGCCCATAAGCACCATCCGAAAGCTTCAACGCCACTCCTTAAAGTACTTGCCTTCTTCGACTCAAGAATTTCAAAACAAGATCACATCACCAGGCAAAGAAGAGGAAGTTGATCATCAAGACATGGTCAAAACTTGTTGGTTTTTCATGAATAAAAATTCTCCCAAGTTACCATATGCTTGTTTGGGACATTCCAGCAGTGACGAAAACAATGTGAATAAAAATGAGGAGGGCTGTTTCCAGAGCAATTATTGCTTTGATTGCTTGCTAATGGGGACCAAGATTAAAGAAGATGGTGATGATTCAAAAGGGGAAGCAAAATTATCACCGAGCACCAGTACTCCTACTTGTTCTTCAGAAACCAAGGGACTTGAAAGGAAAAGGGTCGGCAGAGATTTAACAAGAATTGGGGTAAAAGGAACATCTAAGAGACTTGCATCTCTTGATAATTGGCATACAAATCTGGAGATCATTACTGAAGAATGA

Protein Analysis

235

Amino Acids

26.53

Weight (kDa)

8.0

Isoelectric Point (pI)

54.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 6 - 234 2e-19 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0010805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51950 AT3G16500 AT3G16500
fragaria_vesca FvH4_6g32450 FvH4_6g32450
malus_domestica MD09G1202300.v1.1 MD17G1183500.v1.1
prunus_persica Prupe.3G058600_v2.0.a1
pyrus_communis pycom09g11930 pycom17g19260
rosa_chinensis RchiOBHm_Chr2g0140681
rosa_laevigata RLG00000019891
rosa_multiflora Rmu_sc0003342.1_g000011
rosa_roxburghii Rroxscaffold_2G00104590
rosa_rugosa Rorug02G0364000
rosa_samantha Rh2AG415700 Rh2BG425200 Rh2CG401700 Rh2DG435200
rosa_wichuraiana Rw2G034010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 2 cut(s) 290, 379
AcuI CTGAAG 1 cut(s) 561
AcvI CACGTG 1 cut(s) 76
AfaI GTAC 4 cut(s) 94, 215, 269, 562
AgsI TTSAA 5 cut(s) 12, 251, 296, 528, 596
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 4 cut(s) 15, 112, 202, 247
AluI AGCT 4 cut(s) 15, 112, 202, 247
Alw21I GWGCWC 3 cut(s) 35, 114, 557
Alw26I GTCTC 1 cut(s) 646
AoxI GGCC 2 cut(s) 70, 205
ApeKI GCWGC 2 cut(s) 104, 163
ApoI RAATTY 2 cut(s) 290, 379
AspS9I GGNCC 1 cut(s) 498
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 4 cut(s) 53, 303, 530, 540
AvaII GGWCC 1 cut(s) 498
BaeGI GKGCMC 1 cut(s) 228
BanII GRGCYC 1 cut(s) 114
BbrPI CACGTG 1 cut(s) 76
Bbv12I GWGCWC 3 cut(s) 35, 114, 557
BbvI GCAGC 2 cut(s) 91, 175
BccI CCATC 2 cut(s) 245, 509
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 315
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 646
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 2 cut(s) 105, 197
BglII AGATCT 1 cut(s) 153
BisI GCNGC 3 cut(s) 70, 105, 164
BlsI GCNGC 3 cut(s) 71, 106, 165
BmcAI AGTACT 3 cut(s) 215, 269, 562
Bme1390I CCNGG 2 cut(s) 66, 315
Bme18I GGWCC 1 cut(s) 498
BmgT120I GGNCC 1 cut(s) 498
BmiI GGNNCC 1 cut(s) 499
BmrFI CCNGG 2 cut(s) 66, 315
BmsI GCATC 2 cut(s) 127, 668
BpmI CTGGAG 1 cut(s) 707
BpuEI CTTGAG 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 76
BsaJI CCNNGG 3 cut(s) 64, 167, 585
BsaWI WCCGGW 1 cut(s) 184
BsaXI ACNNNNNCTCC 2 cut(s) 547, 577
Bse1I ACTGG 1 cut(s) 558
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 3 cut(s) 64, 167, 585
BseGI GGATG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 558
BseRI GAGGAG 1 cut(s) 464
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 2 cut(s) 91, 175
BshFI GGCC 2 cut(s) 72, 207
BsiHKAI GWGCWC 3 cut(s) 35, 114, 557
BsiSI CCGG 2 cut(s) 66, 185
BslFI GGGAC 3 cut(s) 423, 511, 603
BsmAI GTCTC 1 cut(s) 646
BsmFI GGGAC 3 cut(s) 423, 511, 603
BsnI GGCC 2 cut(s) 72, 207
Bsp1286I GDGCHC 4 cut(s) 35, 114, 228, 557
Bsp143I GATC 4 cut(s) 153, 303, 334, 690
BspACI CCGC 1 cut(s) 69
BspANI GGCC 2 cut(s) 72, 207
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 499
BspMAI CTGCAG 1 cut(s) 109
BsrI ACTGG 1 cut(s) 558
BssECI CCNNGG 3 cut(s) 64, 167, 585
BssMI GATC 4 cut(s) 153, 303, 334, 690
BssT1I CCWWGG 1 cut(s) 585
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 318
BstAPI GCANNNNNTGC 2 cut(s) 179, 474
BstBAI YACGTR 1 cut(s) 76
BstC8I GCNNGC 2 cut(s) 17, 488
BstDEI CTNAG 2 cut(s) 27, 648
BstDSI CCRYGG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 237
BstKTI GATC 4 cut(s) 156, 306, 337, 693
BstMAI GTCTC 1 cut(s) 646
BstMBI GATC 4 cut(s) 153, 303, 334, 690
BstMWI GCNNNNNNNGC 5 cut(s) 21, 30, 179, 474, 483
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 46
BstSCI CCNGG 2 cut(s) 64, 313
BstSFI CTRYAG 2 cut(s) 105, 197
BstSLI GKGCMC 1 cut(s) 228
BstV1I GCAGC 2 cut(s) 91, 175
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 2 cut(s) 72, 207
BtgI CCRYGG 1 cut(s) 167
BtsCI GGATG 1 cut(s) 237
BtsI GCAGTG 1 cut(s) 427
BtsIMutI CAGTG 1 cut(s) 427
Cac8I GCNNGC 2 cut(s) 17, 488
CciI TCATGA 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 498
Csp6I GTAC 4 cut(s) 93, 214, 268, 561
CviAII CATG 5 cut(s) 43, 115, 193, 346, 370
CviJI RGCY 9 cut(s) 15, 19, 72, 112, 166, 202, 207, 247, 456
CviKI_1 RGCY 9 cut(s) 15, 19, 72, 112, 166, 202, 207, 247, 456
CviQI GTAC 4 cut(s) 93, 214, 268, 561
DdeI CTNAG 2 cut(s) 27, 648
DpnI GATC 4 cut(s) 155, 305, 336, 692
DpnII GATC 4 cut(s) 153, 303, 334, 690
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
Ecl136II GAGCTC 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 585
Eco24I GRGCYC 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 498
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 561
Eco72I CACGTG 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 112
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 585
EcoT22I ATGCAT 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 585
FaeI CATG 5 cut(s) 46, 118, 196, 349, 373
FaqI GGGAC 3 cut(s) 423, 511, 603
FatI CATG 5 cut(s) 42, 114, 192, 345, 369
FauNDI CATATG 1 cut(s) 397
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 3 cut(s) 70, 105, 164
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 3 cut(s) 70, 105, 164
FspBI CTAG 1 cut(s) 203
GluI GCNGC 3 cut(s) 70, 105, 164
GsuI CTGGAG 1 cut(s) 707
HaeIII GGCC 2 cut(s) 72, 207
HapII CCGG 2 cut(s) 66, 185
Hin1II CATG 5 cut(s) 46, 118, 196, 349, 373
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 3 cut(s) 124, 283, 524
HpaII CCGG 2 cut(s) 66, 185
HphI GGTGA 4 cut(s) 53, 303, 530, 540
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 3 cut(s) 123, 242, 580
Hpy188III TCNNGA 7 cut(s) 86, 287, 341, 370, 463, 665, 686
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 285
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 5 cut(s) 24, 107, 118, 182, 659
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 30, 179, 474, 483
HpyF3I CTNAG 2 cut(s) 27, 648
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 5 cut(s) 46, 118, 196, 349, 373
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 4 cut(s) 153, 303, 334, 690
Lsp1109I GCAGC 2 cut(s) 91, 175
LweI GCATC 2 cut(s) 127, 668
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 390, 422
MalI GATC 4 cut(s) 155, 305, 336, 692
MboI GATC 4 cut(s) 153, 303, 334, 690
MboII GAAGA 5 cut(s) 148, 270, 335, 524, 567
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 4 cut(s) 35, 114, 228, 557
MluCI AATT 7 cut(s) 54, 290, 379, 469, 542, 627, 670
MlyI GAGTC 1 cut(s) 277
MnlI CCTC 3 cut(s) 319, 442, 445
Mph1103I ATGCAT 1 cut(s) 120
MseI TTAA 3 cut(s) 263, 507, 620
MspI CCGG 2 cut(s) 66, 185
MspR9I CCNGG 2 cut(s) 66, 315
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 5 cut(s) 21, 30, 179, 474, 483
NciI CCSGG 1 cut(s) 66
NdeI CATATG 1 cut(s) 397
NdeII GATC 4 cut(s) 153, 303, 334, 690
NlaIII CATG 5 cut(s) 46, 118, 196, 349, 373
NlaIV GGNNCC 1 cut(s) 499
NmuCI GTSAC 1 cut(s) 422
NsiI ATGCAT 1 cut(s) 120
NspI RCATGY 1 cut(s) 46
PagI TCATGA 1 cut(s) 369
PfeI GAWTC 2 cut(s) 124, 524
PflFI GACNNNGTC 1 cut(s) 347
PkrI GCNGC 3 cut(s) 71, 106, 165
PleI GAGTC 1 cut(s) 277
PmaCI CACGTG 1 cut(s) 76
PmlI CACGTG 1 cut(s) 76
PpsI GAGTC 1 cut(s) 277
Ppu21I YACGTR 1 cut(s) 76
Psp124BI GAGCTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 313
PspCI CACGTG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 499
PspPI GGNCC 1 cut(s) 498
PsrI GAACNNNNNNTAC 2 cut(s) 42, 74
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 153
PsyI GACNNNGTC 1 cut(s) 347
RsaI GTAC 4 cut(s) 94, 215, 269, 562
RsaNI GTAC 4 cut(s) 93, 214, 268, 561
SacI GAGCTC 1 cut(s) 114
SaqAI TTAA 3 cut(s) 263, 507, 620
SatI GCNGC 3 cut(s) 70, 105, 164
Sau3AI GATC 4 cut(s) 153, 303, 334, 690
Sau96I GGNCC 1 cut(s) 498
ScaI AGTACT 3 cut(s) 215, 269, 562
SchI GAGTC 1 cut(s) 277
ScrFI CCNGG 2 cut(s) 66, 315
SduI GDGCHC 4 cut(s) 35, 114, 228, 557
SetI ASST 5 cut(s) 17, 78, 114, 204, 249
SfaNI GCATC 2 cut(s) 127, 668
SfcI CTRYAG 2 cut(s) 105, 197
SinI GGWCC 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 7 cut(s) 54, 290, 379, 469, 542, 627, 670
SsiI CCGC 1 cut(s) 69
SspMI CTAG 1 cut(s) 203
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 64, 313
StyI CCWWGG 1 cut(s) 585
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 281
TasI AATT 7 cut(s) 54, 290, 379, 469, 542, 627, 670
TatI WGTACW 4 cut(s) 92, 213, 267, 560
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 2 cut(s) 124, 524
Tru1I TTAA 3 cut(s) 263, 507, 620
Tru9I TTAA 3 cut(s) 263, 507, 620
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 2 cut(s) 104, 163
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 2 cut(s) 358, 386
TspRI CASTG 1 cut(s) 427
Tth111I GACNNNGTC 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 498
XapI RAATTY 2 cut(s) 290, 379
XceI RCATGY 1 cut(s) 46
XspI CTAG 1 cut(s) 203
ZrmI AGTACT 3 cut(s) 215, 269, 562
Zsp2I ATGCAT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.