Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010805

Physical Location & Seq

Genomic Coordinates Reverse (-)

21576812 .. 21580307

Gene Structure 3496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1183500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGTCGCTGAGATGGAGGGATGTACAAGGAAGGAGGAGGAGGCATGTCCACAGCTGCTAGATTTAATTCCTAGACAGAGAGACTGGCTTGTGAGCAGAGATATTGAGGGCAGCAGCCATGGAAGCTCCTCCTCAGAGGAGAAGAAGCTTGAGCTCAGGCTTGGCCCTCCATGCCAAAACTGGTCAATGGAAAGAGAAAGAGATGAGAAGTCTCAGTCCCTTCTCTCTCTTGGGTACTTTTCTTCCCCCATGTTCTCCAACCAAACCCAGAAACTTATTTCTTCTTACCAGCAGCAGGCAAAAGTTGGATCTTTTATTCACCTGCCTGTCAACCCCAACAAAGCGTCACAGCCCTGTTGCAGTAAAGTGGTAGACTTGCAGAATGCAGAAAGGAAAGGGTTTTCACCAGCCCCTGCAAACACAGCTGTGCTCCCCAACACCTCTCAGAAAAGAACTGCTCCTGCTCCGGTTGTGGGTTGGCCTCCAGTTCGATCATTTAGGAAAAATCTTGCAAGCAACAACTCATCGAAACCTGCGGTTGAATCCGAAAATGTTGTCCAAAACAAAGTTCCTAATGGTAAACCAGTTGAAACCAGCAGACAGGGTCTGTTTGTGAAAATTAACATGGATGGGGTTCCCATCGGAAGAAAAGTGGACCTCGGTGCCTATGACAGCTACCAAAAGCTCTCCTCCGCTGTCGATGAACTCTTCCGTGGCCTTCTCGCAGCTCAAAGAGATTCCTGTGCTGGTGGAACCAAGAACAAGCAAGGGGAAGAGAAAGAAATCGCAGGCTTATTGGATGGAAGTGGAGAATATACCCTAGTTTATGAAGATAATGAAGGAGACAGGATGCTCGTTGGGGATGTCCCATGGCAGATGTTTGTGTCGACTGTGAAGAGGCTGCGTGTGCTCAAGAGCTCTGAACTTTCTGCACTTCGTCTTCGTAGCAGCAAGCAAGATAAGATGCCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006417 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

325

Amino Acids

35.79

Weight (kDa)

8.79

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	50 - 312	5.8e-67	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51950 AT3G16500 AT3G16500
fragaria_vesca	FvH4_6g32450 FvH4_6g32450
malus_domestica	MD09G1202300.v1.1 MD17G1183500.v1.1
prunus_persica	Prupe.3G058600_v2.0.a1
pyrus_communis	pycom09g11930 pycom17g19260
rosa_chinensis	RchiOBHm_Chr2g0140681
rosa_laevigata	RLG00000019891
rosa_multiflora	Rmu_sc0003342.1_g000011
rosa_roxburghii	Rroxscaffold_2G00104590
rosa_rugosa	Rorug02G0364000
rosa_samantha	Rh2AG415700 Rh2BG425200 Rh2CG401700 Rh2DG435200
rosa_wichuraiana	Rw2G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	330
Acc36I	ACCTGC	2 cut(s)	330, 541
AccB1I	GGYRCC	1 cut(s)	662
AccI	GTMKAC	2 cut(s)	372, 887
AciI	CCGC	2 cut(s)	536, 693
AclWI	GGATC	1 cut(s)	316
AfaI	GTAC	2 cut(s)	25, 236
AfiI	CCNNNNNNNGG	2 cut(s)	295, 473
AgsI	TTSAA	2 cut(s)	542, 590
AjuI	GAANNNNNNNTTGG	2 cut(s)	552, 584
AleI	CACNNNNGTG	1 cut(s)	425
AluBI	AGCT	9 cut(s)	55, 126, 148, 154, 425, 675, 685, 728, 918
AluI	AGCT	9 cut(s)	55, 126, 148, 154, 425, 675, 685, 728, 918
Alw21I	GWGCWC	4 cut(s)	156, 432, 912, 920
Alw26I	GTCTC	3 cut(s)	75, 216, 837
AlwI	GGATC	1 cut(s)	316
AlwNI	CAGNNNCTG	2 cut(s)	413, 607
AoxI	GGCC	3 cut(s)	163, 479, 715
ApeKI	GCWGC	7 cut(s)	55, 111, 114, 292, 725, 901, 948
ArsI	GACNNNNNNTTYG	2 cut(s)	540, 572
AspS9I	GGNCC	2 cut(s)	164, 655
AsuHPI	GGTGA	2 cut(s)	311, 396
AvaII	GGWCC	1 cut(s)	655
BanI	GGYRCC	1 cut(s)	662
BanII	GRGCYC	2 cut(s)	156, 920
BbsI	GAAGAC	1 cut(s)	932
Bbv12I	GWGCWC	4 cut(s)	156, 432, 912, 920
BbvI	GCAGC	7 cut(s)	42, 123, 126, 304, 737, 888, 960
BccI	CCATC	4 cut(s)	7, 623, 647, 794
BcoDI	GTCTC	3 cut(s)	75, 216, 837
BfaI	CTAG	3 cut(s)	59, 72, 821
BfuAI	ACCTGC	2 cut(s)	330, 541
BisI	GCNGC	7 cut(s)	56, 112, 115, 293, 726, 902, 949
BlsI	GCNGC	7 cut(s)	57, 113, 116, 294, 727, 903, 950
Bme18I	GGWCC	1 cut(s)	655
BmgT120I	GGNCC	2 cut(s)	164, 655
BmiI	GGNNCC	3 cut(s)	636, 664, 754
BmsI	GCATC	2 cut(s)	840, 954
BpiI	GAAGAC	1 cut(s)	932
BpmI	CTGGAG	1 cut(s)	468
Bpu10I	CCTNAGC	1 cut(s)	155
BpuEI	CTTGAG	2 cut(s)	170, 896
BsaJI	CCNNGG	4 cut(s)	118, 658, 712, 869
BsaWI	WCCGGW	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 473
Bse1I	ACTGG	4 cut(s)	89, 185, 485, 584
BseDI	CCNNGG	4 cut(s)	118, 658, 712, 869
BseGI	GGATG	5 cut(s)	26, 634, 805, 855, 868
BseLI	CCNNNNNNNGG	2 cut(s)	295, 473
BseMII	CTCAG	4 cut(s)	147, 169, 227, 458
BseNI	ACTGG	4 cut(s)	89, 185, 485, 584
BseRI	GAGGAG	6 cut(s)	50, 53, 118, 121, 152, 679
BseXI	GCAGC	7 cut(s)	42, 123, 126, 304, 737, 888, 960
BsgI	GTGCAG	1 cut(s)	915
BshFI	GGCC	3 cut(s)	165, 481, 717
BshNI	GGYRCC	1 cut(s)	662
BsiHKAI	GWGCWC	4 cut(s)	156, 432, 912, 920
BsiSI	CCGG	1 cut(s)	467
BslFI	GGGAC	2 cut(s)	202, 851
BslI	CCNNNNNNNGG	2 cut(s)	295, 473
BsmAI	GTCTC	3 cut(s)	75, 216, 837
BsmFI	GGGAC	2 cut(s)	202, 851
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	3 cut(s)	165, 481, 717
Bsp1286I	GDGCHC	4 cut(s)	156, 432, 912, 920
Bsp1407I	TGTACA	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	308, 491
Bsp19I	CCATGG	2 cut(s)	118, 869
BspACI	CCGC	2 cut(s)	536, 693
BspANI	GGCC	3 cut(s)	165, 481, 717
BspCNI	CTCAG	4 cut(s)	146, 168, 226, 457
BspLI	GGNNCC	3 cut(s)	636, 664, 754
BspMI	ACCTGC	2 cut(s)	330, 541
BspPI	GGATC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	662
BsrGI	TGTACA	1 cut(s)	23
BsrI	ACTGG	4 cut(s)	89, 185, 485, 584
BssECI	CCNNGG	4 cut(s)	118, 658, 712, 869
BssMI	GATC	2 cut(s)	308, 491
BssT1I	CCWWGG	2 cut(s)	118, 869
Bst4CI	ACNGT	1 cut(s)	892
Bst6I	CTCTTC	3 cut(s)	713, 768, 890
BstAUI	TGTACA	1 cut(s)	23
BstC8I	GCNNGC	4 cut(s)	297, 514, 790, 953
BstDEI	CTNAG	5 cut(s)	9, 133, 155, 213, 444
BstDSI	CCRYGG	3 cut(s)	118, 712, 869
BstF5I	GGATG	5 cut(s)	26, 634, 805, 855, 868
BstKTI	GATC	2 cut(s)	311, 494
BstMAI	GTCTC	3 cut(s)	75, 216, 837
BstMBI	GATC	2 cut(s)	308, 491
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 171, 422, 907
BstNSI	RCATGY	1 cut(s)	48
BstV1I	GCAGC	7 cut(s)	42, 123, 126, 304, 737, 888, 960
BstV2I	GAAGAC	1 cut(s)	932
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BsuRI	GGCC	3 cut(s)	165, 481, 717
BtgI	CCRYGG	3 cut(s)	118, 712, 869
BtsCI	GGATG	5 cut(s)	26, 634, 805, 855, 868
BveI	ACCTGC	2 cut(s)	330, 541
Cac8I	GCNNGC	4 cut(s)	297, 514, 790, 953
CaiI	CAGNNNCTG	2 cut(s)	413, 607
Cfr13I	GGNCC	2 cut(s)	164, 655
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	2 cut(s)	24, 235
CviAII	CATG	6 cut(s)	45, 119, 171, 250, 625, 870
CviQI	GTAC	2 cut(s)	24, 235
DdeI	CTNAG	5 cut(s)	9, 133, 155, 213, 444
DpnI	GATC	2 cut(s)	310, 493
DpnII	GATC	2 cut(s)	308, 491
Eam1104I	CTCTTC	3 cut(s)	713, 768, 890
EarI	CTCTTC	3 cut(s)	713, 768, 890
Ecl136II	GAGCTC	2 cut(s)	154, 918
Eco130I	CCWWGG	2 cut(s)	118, 869
Eco24I	GRGCYC	2 cut(s)	156, 920
Eco47I	GGWCC	1 cut(s)	655
Eco53kI	GAGCTC	2 cut(s)	154, 918
EcoICRI	GAGCTC	2 cut(s)	154, 918
EcoT14I	CCWWGG	2 cut(s)	118, 869
EcoT38I	GRGCYC	2 cut(s)	156, 920
ErhI	CCWWGG	2 cut(s)	118, 869
FaeI	CATG	6 cut(s)	48, 122, 174, 253, 628, 873
FaiI	YATR	9 cut(s)	46, 120, 172, 251, 626, 669, 816, 828, 871
FaqI	GGGAC	2 cut(s)	202, 851
FatI	CATG	6 cut(s)	44, 118, 170, 249, 624, 869
FblI	GTMKAC	2 cut(s)	372, 887
Fnu4HI	GCNGC	7 cut(s)	56, 112, 115, 293, 726, 902, 949
FokI	GGATG	5 cut(s)	33, 641, 812, 862, 875
FriOI	GRGCYC	2 cut(s)	156, 920
Fsp4HI	GCNGC	7 cut(s)	56, 112, 115, 293, 726, 902, 949
FspBI	CTAG	3 cut(s)	59, 72, 821
GluI	GCNGC	7 cut(s)	56, 112, 115, 293, 726, 902, 949
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	3 cut(s)	165, 481, 717
HapII	CCGG	1 cut(s)	467
HgaI	GACGC	1 cut(s)	333
Hin1II	CATG	6 cut(s)	48, 122, 174, 253, 628, 873
HincII	GTYRAC	2 cut(s)	331, 888
HindII	GTYRAC	2 cut(s)	331, 888
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	2 cut(s)	542, 737
HpaII	CCGG	1 cut(s)	467
HphI	GGTGA	2 cut(s)	311, 396
Hpy166II	GTNNAC	6 cut(s)	50, 331, 373, 581, 655, 888
Hpy188I	TCNGA	5 cut(s)	136, 447, 547, 644, 922
Hpy188III	TCNNGA	1 cut(s)	913
Hpy8I	GTNNAC	6 cut(s)	50, 331, 373, 581, 655, 888
HpyAV	CCTTC	4 cut(s)	25, 230, 728, 833
HpyCH4III	ACNGT	1 cut(s)	892
HpyCH4V	TGCA	6 cut(s)	360, 379, 386, 416, 512, 932
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 171, 422, 907
HpyF3I	CTNAG	5 cut(s)	9, 133, 155, 213, 444
Hsp92II	CATG	6 cut(s)	48, 122, 174, 253, 628, 873
Kzo9I	GATC	2 cut(s)	308, 491
LmnI	GCTCC	4 cut(s)	131, 435, 463, 469
Lsp1109I	GCAGC	7 cut(s)	42, 123, 126, 304, 737, 888, 960
LweI	GCATC	2 cut(s)	840, 954
MaeI	CTAG	3 cut(s)	59, 72, 821
MaeIII	GTNAC	1 cut(s)	345
MalI	GATC	2 cut(s)	310, 493
MboI	GATC	2 cut(s)	308, 491
MboII	GAAGA	9 cut(s)	154, 234, 273, 657, 700, 785, 842, 907, 932
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	4 cut(s)	156, 432, 912, 920
MluCI	AATT	2 cut(s)	66, 618
MmeI	TCCRAC	2 cut(s)	282, 286
MseI	TTAA	2 cut(s)	65, 621
MslI	CAYNNNNRTG	1 cut(s)	425
MspA1I	CMGCKG	3 cut(s)	55, 425, 695
MspI	CCGG	1 cut(s)	467
Mva1269I	GAATGC	1 cut(s)	388
MwoI	GCNNNNNNNGC	4 cut(s)	123, 171, 422, 907
NcoI	CCATGG	2 cut(s)	118, 869
NdeII	GATC	2 cut(s)	308, 491
NlaIII	CATG	6 cut(s)	48, 122, 174, 253, 628, 873
NlaIV	GGNNCC	3 cut(s)	636, 664, 754
NmuCI	GTSAC	1 cut(s)	345
NspI	RCATGY	1 cut(s)	48
OliI	CACNNNNGTG	1 cut(s)	425
PaqCI	CACCTGC	1 cut(s)	330
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	2 cut(s)	542, 737
PflFI	GACNNNGTC	1 cut(s)	603
PkrI	GCNGC	7 cut(s)	57, 113, 116, 294, 727, 903, 950
Psp124BI	GAGCTC	2 cut(s)	156, 920
PspN4I	GGNNCC	3 cut(s)	636, 664, 754
PspPI	GGNCC	2 cut(s)	164, 655
PstNI	CAGNNNCTG	2 cut(s)	413, 607
PsuI	RGATCY	1 cut(s)	308
PsyI	GACNNNGTC	1 cut(s)	603
PvuII	CAGCTG	2 cut(s)	55, 425
RsaI	GTAC	2 cut(s)	25, 236
RsaNI	GTAC	2 cut(s)	24, 235
RseI	CAYNNNNRTG	1 cut(s)	425
SacI	GAGCTC	2 cut(s)	156, 920
SalI	GTCGAC	1 cut(s)	886
SaqAI	TTAA	2 cut(s)	65, 621
SatI	GCNGC	7 cut(s)	56, 112, 115, 293, 726, 902, 949
Sau3AI	GATC	2 cut(s)	308, 491
Sau96I	GGNCC	2 cut(s)	164, 655
SduI	GDGCHC	4 cut(s)	156, 432, 912, 920
SfaNI	GCATC	2 cut(s)	840, 954
SinI	GGWCC	1 cut(s)	655
SmiMI	CAYNNNNRTG	1 cut(s)	425
SmlI	CTYRAG	2 cut(s)	149, 911
SmoI	CTYRAG	2 cut(s)	149, 911
Sse9I	AATT	2 cut(s)	66, 618
SsiI	CCGC	2 cut(s)	536, 693
SspMI	CTAG	3 cut(s)	59, 72, 821
SstI	GAGCTC	2 cut(s)	156, 920
StyI	CCWWGG	2 cut(s)	118, 869
TaaI	ACNGT	1 cut(s)	892
TaqI	TCGA	4 cut(s)	490, 527, 699, 887
TasI	AATT	2 cut(s)	66, 618
TatI	WGTACW	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	542, 737
Tru1I	TTAA	2 cut(s)	65, 621
Tru9I	TTAA	2 cut(s)	65, 621
TseFI	GTSAC	1 cut(s)	345
TseI	GCWGC	7 cut(s)	55, 111, 114, 292, 725, 901, 948
Tsp45I	GTSAC	1 cut(s)	345
TspDTI	ATGAA	3 cut(s)	717, 843, 852
TspGWI	ACGGA	1 cut(s)	701
Tth111I	GACNNNGTC	1 cut(s)	603
VpaK11BI	GGWCC	1 cut(s)	655
XceI	RCATGY	1 cut(s)	48
XcmI	CCANNNNNNNNNTGG	1 cut(s)	177
XmiI	GTMKAC	2 cut(s)	372, 887
XspI	CTAG	3 cut(s)	59, 72, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.