Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003342.1

Orthogroup ID

OG0010805

Physical Location & Seq

Genomic Coordinates Forward (+)

45856 .. 49054

Gene Structure 3199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003342.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

atgcaaaagatgaaggaggcaagtcctcaacttctggatttgattcccaaagaaagagagtggcttgtgagcaaagatgagagccatggctcttcagaagagaagaaattggagctaaggcttggtcctcctggtcaagactggtcaaatctgagagacaacacctccagaggccacaaagaaagagatgagtctcttctttctcttgggtacttctacaacagcagcagcaatggaaaccaaacccaccattttacttcctcagagagaaagactgtcctgccctctccatggtcttcttctccctcagggtaccaccacaaccagacaaaaggtccttcctttcttcagttctcaccaagctctcagagcctgcctgtcacccagaaggcgtcacatccctgttgcactaaagcggtagacttgcagagcgcagagaagaagaaagcttctgcaaatccagctgtgaccaacaacacttctcagaaaagaactgctcctgctccagtcgtgggttggcctccaattcgatcttttcggaagaatcttgcgagcaccagctcttcaaaaccagcacctgagtcacaaagtgtagcccctagcaaggttcctaatgttaaaccagtcgaaaccaacggaaaaggcatgtttgtgaaaatcaatatggatggagtcccaattggacgaaaagtagacctcagtgcttatgccagctacgaaaagctctcctctgctgttgatgaactcttccgtgggctccttgcagctcaaagagattgttgtgctggtggaatcaagaacaagatagaagaagagaaagaaattacaggtttattggatggaagtggagaatatactctcgtatatgaagataatgagggtgacaggatgcttgttggggatgtcccatggcacatgtttgtgtctactgtgaagaggttgcgtgtgctcaagagctctgaactttctgcacttagtattcgcagcggtaaagaactgaagaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006417 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

335

Amino Acids

36.81

Weight (kDa)

9.16

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51950 AT3G16500 AT3G16500
fragaria_vesca	FvH4_6g32450 FvH4_6g32450
malus_domestica	MD09G1202300.v1.1 MD17G1183500.v1.1
prunus_persica	Prupe.3G058600_v2.0.a1
pyrus_communis	pycom09g11930 pycom17g19260
rosa_chinensis	RchiOBHm_Chr2g0140681
rosa_laevigata	RLG00000019891
rosa_multiflora	Rmu_sc0003342.1_g000011
rosa_roxburghii	Rroxscaffold_2G00104590
rosa_rugosa	Rorug02G0364000
rosa_samantha	Rh2AG415700 Rh2BG425200 Rh2CG401700 Rh2DG435200
rosa_wichuraiana	Rw2G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	312
AccI	GTMKAC	3 cut(s)	420, 693, 926
AciI	CCGC	2 cut(s)	416, 987
AcuI	CTGAAG	2 cut(s)	78, 332
AcyI	GRCGYC	1 cut(s)	392
AdeI	CACNNNGTG	1 cut(s)	590
AfaI	GTAC	2 cut(s)	212, 314
AfiI	CCNNNNNNNGG	3 cut(s)	291, 512, 604
AflIII	ACRYGT	1 cut(s)	915
AgsI	TTSAA	1 cut(s)	567
AhdI	GACNNNNNGTC	1 cut(s)	333
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	9 cut(s)	115, 363, 449, 464, 561, 714, 724, 767, 957
AluI	AGCT	9 cut(s)	115, 363, 449, 464, 561, 714, 724, 767, 957
Alw21I	GWGCWC	3 cut(s)	557, 951, 959
Alw26I	GTCTC	2 cut(s)	150, 198
AlwNI	CAGNNNCTG	2 cut(s)	373, 578
AoxI	GGCC	2 cut(s)	172, 518
ApeKI	GCWGC	4 cut(s)	225, 228, 764, 984
Asp718I	GGTACC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	434
AspS9I	GGNCC	2 cut(s)	125, 335
AsuHPI	GGTGA	3 cut(s)	348, 373, 893
AvaII	GGWCC	2 cut(s)	125, 335
AxyI	CCTNAGG	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	312
BanII	GRGCYC	2 cut(s)	759, 959
BbsI	GAAGAC	1 cut(s)	288
Bbv12I	GWGCWC	3 cut(s)	557, 951, 959
BbvI	GCAGC	4 cut(s)	237, 240, 776, 996
BccI	CCATC	2 cut(s)	662, 833
BciT130I	CCWGG	1 cut(s)	132
BcoDI	GTCTC	2 cut(s)	150, 198
BfaI	CTAG	1 cut(s)	600
BisI	GCNGC	4 cut(s)	226, 229, 765, 985
BlsI	GCNGC	4 cut(s)	227, 230, 766, 986
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	2 cut(s)	125, 335
BmeRI	GACNNNNNGTC	1 cut(s)	333
BmgT120I	GGNCC	2 cut(s)	125, 335
BmiI	GGNNCC	3 cut(s)	314, 609, 758
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	879
BpiI	GAAGAC	1 cut(s)	288
BpmI	CTGGAG	2 cut(s)	151, 489
Bpu10I	CCTNAGC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	935
BsaHI	GRCGYC	1 cut(s)	392
BsaJI	CCNNGG	4 cut(s)	85, 290, 751, 908
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 512, 604
Bse1I	ACTGG	3 cut(s)	146, 506, 623
Bse21I	CCTNAGG	1 cut(s)	307
Bse3DI	GCAATG	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	4 cut(s)	85, 290, 751, 908
BseGI	GGATG	5 cut(s)	397, 673, 844, 894, 907
BseLI	CCNNNNNNNGG	3 cut(s)	291, 512, 604
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	7 cut(s)	143, 276, 321, 380, 497, 570, 712
BseNI	ACTGG	3 cut(s)	146, 506, 623
BseRI	GAGGAG	1 cut(s)	718
BseXI	GCAGC	4 cut(s)	237, 240, 776, 996
BsgI	GTGCAG	1 cut(s)	954
BshFI	GGCC	2 cut(s)	174, 520
BshNI	GGYRCC	1 cut(s)	312
BsiHKAI	GWGCWC	3 cut(s)	557, 951, 959
BslFI	GGGAC	2 cut(s)	659, 890
BslI	CCNNNNNNNGG	3 cut(s)	291, 512, 604
BsmAI	GTCTC	2 cut(s)	150, 198
BsmFI	GGGAC	2 cut(s)	659, 890
BsnI	GGCC	2 cut(s)	174, 520
Bsp1286I	GDGCHC	4 cut(s)	557, 759, 951, 959
Bsp143I	GATC	1 cut(s)	530
Bsp19I	CCATGG	3 cut(s)	85, 290, 908
BspACI	CCGC	2 cut(s)	416, 987
BspANI	GGCC	2 cut(s)	174, 520
BspCNI	CTCAG	7 cut(s)	144, 275, 320, 379, 496, 571, 711
BspLI	GGNNCC	3 cut(s)	314, 609, 758
BspQI	GCTCTTC	2 cut(s)	97, 568
BspT107I	GGYRCC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	3 cut(s)	146, 506, 623
BssECI	CCNNGG	4 cut(s)	85, 290, 751, 908
BssMI	GATC	1 cut(s)	530
BssNI	GRCGYC	1 cut(s)	392
BssT1I	CCWWGG	3 cut(s)	85, 290, 908
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	277, 931
Bst6I	CTCTTC	7 cut(s)	93, 97, 201, 568, 752, 807, 929
BstACI	GRCGYC	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	374, 553, 712
BstDEI	CTNAG	9 cut(s)	116, 152, 262, 307, 366, 483, 579, 698, 974
BstDSI	CCRYGG	4 cut(s)	85, 290, 751, 908
BstF5I	GGATG	5 cut(s)	397, 673, 844, 894, 907
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	1 cut(s)	533
BstMAI	GTCTC	2 cut(s)	150, 198
BstMBI	GATC	1 cut(s)	530
BstMWI	GCNNNNNNNGC	2 cut(s)	369, 461
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	2 cut(s)	649, 919
BstSCI	CCNGG	1 cut(s)	130
BstV1I	GCAGC	4 cut(s)	237, 240, 776, 996
BstV2I	GAAGAC	1 cut(s)	288
Bsu36I	CCTNAGG	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	174, 520
BtgI	CCRYGG	4 cut(s)	85, 290, 751, 908
BtsCI	GGATG	5 cut(s)	397, 673, 844, 894, 907
BtsIMutI	CAGTG	1 cut(s)	706
Cac8I	GCNNGC	3 cut(s)	374, 553, 712
CaiI	CAGNNNCTG	2 cut(s)	373, 578
CfoI	GCGC	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	125, 335
CseI	GACGC	1 cut(s)	381
Csp6I	GTAC	2 cut(s)	211, 313
CviAII	CATG	5 cut(s)	86, 291, 646, 909, 916
CviQI	GTAC	2 cut(s)	211, 313
DdeI	CTNAG	9 cut(s)	116, 152, 262, 307, 366, 483, 579, 698, 974
DpnI	GATC	1 cut(s)	532
DpnII	GATC	1 cut(s)	530
DraIII	CACNNNGTG	1 cut(s)	590
DriI	GACNNNNNGTC	1 cut(s)	333
Eam1104I	CTCTTC	7 cut(s)	93, 97, 201, 568, 752, 807, 929
Eam1105I	GACNNNNNGTC	1 cut(s)	333
EarI	CTCTTC	7 cut(s)	93, 97, 201, 568, 752, 807, 929
Ecl136II	GAGCTC	1 cut(s)	957
Eco130I	CCWWGG	3 cut(s)	85, 290, 908
Eco24I	GRGCYC	2 cut(s)	759, 959
Eco47I	GGWCC	2 cut(s)	125, 335
Eco53kI	GAGCTC	1 cut(s)	957
Eco57I	CTGAAG	2 cut(s)	78, 332
Eco81I	CCTNAGG	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	957
EcoO109I	RGGNCCY	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	3 cut(s)	85, 290, 908
EcoT38I	GRGCYC	2 cut(s)	759, 959
ErhI	CCWWGG	3 cut(s)	85, 290, 908
FaeI	CATG	5 cut(s)	89, 294, 649, 912, 919
FaqI	GGGAC	2 cut(s)	659, 890
FatI	CATG	5 cut(s)	85, 290, 645, 908, 915
FblI	GTMKAC	3 cut(s)	420, 693, 926
Fnu4HI	GCNGC	4 cut(s)	226, 229, 765, 985
FokI	GGATG	5 cut(s)	384, 680, 851, 901, 914
FriOI	GRGCYC	2 cut(s)	759, 959
Fsp4HI	GCNGC	4 cut(s)	226, 229, 765, 985
FspBI	CTAG	1 cut(s)	600
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	4 cut(s)	226, 229, 765, 985
GsuI	CTGGAG	2 cut(s)	151, 489
HaeIII	GGCC	2 cut(s)	174, 520
HgaI	GACGC	1 cut(s)	381
HhaI	GCGC	1 cut(s)	434
Hin1I	GRCGYC	1 cut(s)	392
Hin1II	CATG	5 cut(s)	89, 294, 649, 912, 919
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	6 cut(s)	43, 191, 544, 581, 672, 792
HphI	GGTGA	3 cut(s)	348, 373, 893
Hpy166II	GTNNAC	3 cut(s)	421, 694, 927
Hpy188I	TCNGA	7 cut(s)	97, 153, 265, 369, 486, 540, 961
Hpy188III	TCNNGA	5 cut(s)	35, 137, 168, 796, 952
Hpy8I	GTNNAC	3 cut(s)	421, 694, 927
HpyAV	CCTTC	3 cut(s)	7, 348, 382
HpyCH4III	ACNGT	2 cut(s)	277, 931
HpyCH4V	TGCA	6 cut(s)	4, 408, 427, 455, 764, 971
HpyF10VI	GCNNNNNNNGC	2 cut(s)	369, 461
HpyF3I	CTNAG	9 cut(s)	116, 152, 262, 307, 366, 483, 579, 698, 974
Hsp92I	GRCGYC	1 cut(s)	392
Hsp92II	CATG	5 cut(s)	89, 294, 649, 912, 919
HspAI	GCGC	1 cut(s)	432
KpnI	GGTACC	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	530
LguI	GCTCTTC	2 cut(s)	97, 568
LmnI	GCTCC	4 cut(s)	112, 502, 508, 762
Lsp1109I	GCAGC	4 cut(s)	237, 240, 776, 996
LweI	GCATC	1 cut(s)	879
MaeI	CTAG	1 cut(s)	600
MaeIII	GTNAC	5 cut(s)	379, 393, 466, 582, 881
MalI	GATC	1 cut(s)	532
MboI	GATC	1 cut(s)	530
MfeI	CAATTG	1 cut(s)	678
MhlI	GDGCHC	4 cut(s)	557, 759, 951, 959
MluCI	AATT	4 cut(s)	107, 525, 678, 822
MlyI	GAGTC	3 cut(s)	200, 590, 681
MseI	TTAA	1 cut(s)	618
MslI	CAYNNNNRTG	2 cut(s)	650, 920
MspA1I	CMGCKG	2 cut(s)	464, 987
MspR9I	CCNGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	678
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	369, 461
NcoI	CCATGG	3 cut(s)	85, 290, 908
NdeII	GATC	1 cut(s)	530
NlaIII	CATG	5 cut(s)	89, 294, 649, 912, 919
NlaIV	GGNNCC	3 cut(s)	314, 609, 758
NmuCI	GTSAC	5 cut(s)	379, 393, 466, 582, 881
NspI	RCATGY	2 cut(s)	649, 919
PciI	ACATGT	1 cut(s)	915
PciSI	GCTCTTC	2 cut(s)	97, 568
PfeI	GAWTC	3 cut(s)	43, 544, 792
PkrI	GCNGC	4 cut(s)	227, 230, 766, 986
PleI	GAGTC	3 cut(s)	199, 589, 680
PpsI	GAGTC	3 cut(s)	199, 589, 680
PpuMI	RGGWCCY	1 cut(s)	335
PscI	ACATGT	1 cut(s)	915
Psp124BI	GAGCTC	1 cut(s)	959
Psp5II	RGGWCCY	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	3 cut(s)	314, 609, 758
PspPI	GGNCC	2 cut(s)	125, 335
PspPPI	RGGWCCY	1 cut(s)	335
PstNI	CAGNNNCTG	2 cut(s)	373, 578
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	2 cut(s)	212, 314
RsaNI	GTAC	2 cut(s)	211, 313
RseI	CAYNNNNRTG	2 cut(s)	650, 920
SacI	GAGCTC	1 cut(s)	959
SapI	GCTCTTC	2 cut(s)	97, 568
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	4 cut(s)	226, 229, 765, 985
Sau3AI	GATC	1 cut(s)	530
Sau96I	GGNCC	2 cut(s)	125, 335
SchI	GAGTC	3 cut(s)	200, 590, 681
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	4 cut(s)	557, 759, 951, 959
SfaNI	GCATC	1 cut(s)	879
SinI	GGWCC	2 cut(s)	125, 335
SmiMI	CAYNNNNRTG	2 cut(s)	650, 920
SmlI	CTYRAG	1 cut(s)	950
SmoI	CTYRAG	1 cut(s)	950
Sse9I	AATT	4 cut(s)	107, 525, 678, 822
SsiI	CCGC	2 cut(s)	416, 987
SspMI	CTAG	1 cut(s)	600
SstI	GAGCTC	1 cut(s)	959
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	3 cut(s)	85, 290, 908
TaaI	ACNGT	2 cut(s)	277, 931
TaqI	TCGA	2 cut(s)	529, 627
TasI	AATT	4 cut(s)	107, 525, 678, 822
TfiI	GAWTC	3 cut(s)	43, 544, 792
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TscAI	CASTG	1 cut(s)	706
TseFI	GTSAC	5 cut(s)	379, 393, 466, 582, 881
TseI	GCWGC	4 cut(s)	225, 228, 764, 984
Tsp45I	GTSAC	5 cut(s)	379, 393, 466, 582, 881
TspDTI	ATGAA	3 cut(s)	26, 756, 882
TspGWI	ACGGA	2 cut(s)	651, 740
TspRI	CASTG	1 cut(s)	706
VpaK11BI	GGWCC	2 cut(s)	125, 335
XceI	RCATGY	2 cut(s)	649, 919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	513
XmiI	GTMKAC	3 cut(s)	420, 693, 926
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.