Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010805

Physical Location & Seq

Genomic Coordinates Reverse (-)

10162568 .. 10164828

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11930.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCCACTGAGATGGAGGGGTGTACAAGGAAGGAGAAGGAGGCATGTCCACAACTGTTAGATTTGATTCCAAGAGAGAGAGACTGGCTTGTGAGCAGAGATATTGCGAGAAGCAGCAGCCGTGGAAGCTCCTCCTCAGAGGAGAAGAAGCTTGAGCTCAGGCTTGGCCCTCCAGGTCAAGACTGGTCAATGAAAAGAGAGAGAGATGAGAAGTCTCAGTCCCTTCTCTCTATTGGATACTATTCTTCCCCCATGTCCTCCAACCAAACCCAGAAATTTATTTCTTACCAGCAGCAAGCAAAAGTTGCATCTTTTCTTCACCTGCCTGTCACCCCCAACAAAGCGTCACAGCCCTGGTGCACTAAAGCACTAGACTTGCAGAATGCAGAAAATAAAGGGTTTTCACCAGCCCCTGCAAATACAGCTGTGCTCCCCAACACCTCTCAGAAAAGAACTGCTCCTGCTCCAGTTGTGGGTTGGCCTCCAATTCGATCATTTAGGAAGAATCTTGCAAGCAACAAAAGCTCATCAAAATCAGCAGTCGAATCCGAAAATGTTGTCCAAATCAAAGATCCTAATGGTAAACCAGTTGAAACCAGCGGAAAGGGTCTGTTTGTGAAAATTAACATGGATGGAGTCCCCATTGGAAGAAAAGTGGACCTCAGTGCTTATGACAGCTACCAAAAGCTCTCGTCCGCTGTCGATGAACTCTTCCGTGGCCTTCTCGCCGCTCAAAGAGAATCCTGTAATGGTGGAACCAAGAACAAGCAAGAGGAAGAGAAAGAAATCACAGGCTTATTGGATGGAAGTGGAGAATACACCCTTGTTTATGAAGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTCCCATGGCACATGTTTGTGTCTACTGTGAAGAGGGTGCGTGTGCTGAAGAGCTCTGAACTTTCTGCACTTCATCTTCGTAGCAGCAAAGATAAGATGCCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006417 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

325

Amino Acids

35.9

Weight (kDa)

9.08

Isoelectric Point (pI)

59.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010805)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51950 AT3G16500 AT3G16500
fragaria_vesca	FvH4_6g32450 FvH4_6g32450
malus_domestica	MD09G1202300.v1.1 MD17G1183500.v1.1
prunus_persica	Prupe.3G058600_v2.0.a1
pyrus_communis	pycom09g11930 pycom17g19260
rosa_chinensis	RchiOBHm_Chr2g0140681
rosa_laevigata	RLG00000019891
rosa_multiflora	Rmu_sc0003342.1_g000011
rosa_roxburghii	Rroxscaffold_2G00104590
rosa_rugosa	Rorug02G0364000
rosa_samantha	Rh2AG415700 Rh2BG425200 Rh2CG401700 Rh2DG435200
rosa_wichuraiana	Rw2G034010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	330
Acc36I	ACCTGC	1 cut(s)	330
AccBSI	CCGCTC	1 cut(s)	731
AccI	GTMKAC	1 cut(s)	890
AciI	CCGC	3 cut(s)	600, 696, 729
AclWI	GGATC	1 cut(s)	566
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	935
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	473
AflIII	ACRYGT	1 cut(s)	879
AgsI	TTSAA	1 cut(s)	593
AjnI	CCWGG	2 cut(s)	172, 353
AluBI	AGCT	8 cut(s)	129, 151, 157, 425, 525, 678, 688, 921
AluI	AGCT	8 cut(s)	129, 151, 157, 425, 525, 678, 688, 921
Alw21I	GWGCWC	4 cut(s)	159, 362, 432, 923
Alw26I	GTCTC	3 cut(s)	75, 219, 840
Alw44I	GTGCAC	1 cut(s)	358
AlwI	GGATC	1 cut(s)	566
AlwNI	CAGNNNCTG	1 cut(s)	413
AoxI	GGCC	4 cut(s)	3, 166, 479, 718
ApaLI	GTGCAC	1 cut(s)	358
ApeKI	GCWGC	4 cut(s)	114, 117, 292, 951
ApoI	RAATTY	1 cut(s)	275
ArsI	GACNNNNNNTTYG	2 cut(s)	543, 575
AspS9I	GGNCC	2 cut(s)	167, 658
AsuHPI	GGTGA	3 cut(s)	311, 322, 396
AvaII	GGWCC	1 cut(s)	658
BaeGI	GKGCMC	1 cut(s)	362
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	159, 923
Bbv12I	GWGCWC	4 cut(s)	159, 362, 432, 923
BbvI	GCAGC	4 cut(s)	126, 129, 304, 963
BccI	CCATC	3 cut(s)	7, 626, 797
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	2 cut(s)	174, 355
BciVI	GTATCC	1 cut(s)	230
BcoDI	GTCTC	3 cut(s)	75, 219, 840
BfaI	CTAG	1 cut(s)	371
BfuAI	ACCTGC	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	5 cut(s)	115, 118, 293, 729, 952
BlsI	GCNGC	5 cut(s)	116, 119, 294, 730, 953
Bme1390I	CCNGG	2 cut(s)	174, 355
Bme18I	GGWCC	1 cut(s)	658
BmgT120I	GGNCC	2 cut(s)	167, 658
BmiI	GGNNCC	1 cut(s)	757
BmrFI	CCNGG	2 cut(s)	174, 355
BmsI	GCATC	3 cut(s)	317, 843, 954
BpmI	CTGGAG	2 cut(s)	156, 450
Bpu10I	CCTNAGC	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	173
BsaJI	CCNNGG	4 cut(s)	121, 353, 715, 872
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse1I	ACTGG	4 cut(s)	89, 188, 467, 587
BseBI	CCWGG	2 cut(s)	174, 355
BseDI	CCNNGG	4 cut(s)	121, 353, 715, 872
BseGI	GGATG	4 cut(s)	637, 808, 858, 871
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMII	CTCAG	5 cut(s)	150, 172, 230, 458, 676
BseNI	ACTGG	4 cut(s)	89, 188, 467, 587
BseRI	GAGGAG	3 cut(s)	121, 124, 155
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	4 cut(s)	126, 129, 304, 963
BsgI	GTGCAG	1 cut(s)	918
BshFI	GGCC	4 cut(s)	5, 168, 481, 720
BsiHKAI	GWGCWC	4 cut(s)	159, 362, 432, 923
BslFI	GGGAC	3 cut(s)	205, 623, 854
BslI	CCNNNNNNNGG	1 cut(s)	473
BsmAI	GTCTC	3 cut(s)	75, 219, 840
BsmFI	GGGAC	3 cut(s)	205, 623, 854
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	4 cut(s)	5, 168, 481, 720
Bsp1286I	GDGCHC	4 cut(s)	159, 362, 432, 923
Bsp1407I	TGTACA	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	491, 571
Bsp19I	CCATGG	1 cut(s)	872
BspACI	CCGC	3 cut(s)	600, 696, 729
BspANI	GGCC	4 cut(s)	5, 168, 481, 720
BspCNI	CTCAG	5 cut(s)	149, 171, 229, 457, 675
BspLI	GGNNCC	1 cut(s)	757
BspMI	ACCTGC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	566
BspQI	GCTCTTC	1 cut(s)	911
BsrBI	CCGCTC	1 cut(s)	731
BsrGI	TGTACA	1 cut(s)	23
BsrI	ACTGG	4 cut(s)	89, 188, 467, 587
BssECI	CCNNGG	4 cut(s)	121, 353, 715, 872
BssMI	GATC	2 cut(s)	491, 571
BssT1I	CCWWGG	1 cut(s)	872
Bst2UI	CCWGG	2 cut(s)	174, 355
Bst4CI	ACNGT	2 cut(s)	57, 895
Bst6I	CTCTTC	4 cut(s)	716, 771, 893, 911
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstAUI	TGTACA	1 cut(s)	23
BstC8I	GCNNGC	2 cut(s)	297, 514
BstDEI	CTNAG	6 cut(s)	9, 136, 158, 216, 444, 662
BstDSI	CCRYGG	3 cut(s)	121, 715, 872
BstF5I	GGATG	4 cut(s)	637, 808, 858, 871
BstKTI	GATC	2 cut(s)	494, 574
BstMAI	GTCTC	3 cut(s)	75, 219, 840
BstMBI	GATC	2 cut(s)	491, 571
BstMWI	GCNNNNNNNGC	4 cut(s)	126, 305, 422, 522
BstNI	CCWGG	2 cut(s)	174, 355
BstNSI	RCATGY	2 cut(s)	48, 883
BstSCI	CCNGG	2 cut(s)	172, 353
BstSLI	GKGCMC	1 cut(s)	362
BstV1I	GCAGC	4 cut(s)	126, 129, 304, 963
BstX2I	RGATCY	1 cut(s)	571
BstXI	CCANNNNNNTGG	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	571
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	4 cut(s)	5, 168, 481, 720
BtgI	CCRYGG	3 cut(s)	121, 715, 872
BtsCI	GGATG	4 cut(s)	637, 808, 858, 871
BtsIMutI	CAGTG	2 cut(s)	6, 670
BveI	ACCTGC	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	297, 514
CaiI	CAGNNNCTG	1 cut(s)	413
Cfr13I	GGNCC	2 cut(s)	167, 658
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	24
CviAII	CATG	5 cut(s)	45, 253, 628, 873, 880
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	6 cut(s)	9, 136, 158, 216, 444, 662
DpnI	GATC	2 cut(s)	493, 573
DpnII	GATC	2 cut(s)	491, 571
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	716, 771, 893, 911
EarI	CTCTTC	4 cut(s)	716, 771, 893, 911
Ecl136II	GAGCTC	2 cut(s)	157, 921
Eco130I	CCWWGG	1 cut(s)	872
Eco24I	GRGCYC	2 cut(s)	159, 923
Eco47I	GGWCC	1 cut(s)	658
Eco53kI	GAGCTC	2 cut(s)	157, 921
Eco57I	CTGAAG	1 cut(s)	935
EcoICRI	GAGCTC	2 cut(s)	157, 921
EcoRII	CCWGG	2 cut(s)	172, 353
EcoT14I	CCWWGG	1 cut(s)	872
EcoT38I	GRGCYC	2 cut(s)	159, 923
ErhI	CCWWGG	1 cut(s)	872
FaeI	CATG	5 cut(s)	48, 256, 631, 876, 883
FaiI	YATR	7 cut(s)	46, 254, 629, 672, 831, 874, 881
FaqI	GGGAC	3 cut(s)	205, 623, 854
FatI	CATG	5 cut(s)	44, 252, 627, 872, 879
FblI	GTMKAC	1 cut(s)	890
Fnu4HI	GCNGC	5 cut(s)	115, 118, 293, 729, 952
FokI	GGATG	4 cut(s)	644, 815, 865, 878
FriOI	GRGCYC	2 cut(s)	159, 923
Fsp4HI	GCNGC	5 cut(s)	115, 118, 293, 729, 952
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	5 cut(s)	115, 118, 293, 729, 952
GsuI	CTGGAG	2 cut(s)	156, 450
HaeIII	GGCC	4 cut(s)	5, 168, 481, 720
HgaI	GACGC	1 cut(s)	333
Hin1II	CATG	5 cut(s)	48, 256, 631, 876, 883
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	5 cut(s)	67, 505, 545, 636, 740
HphI	GGTGA	3 cut(s)	311, 322, 396
Hpy166II	GTNNAC	6 cut(s)	24, 50, 360, 584, 658, 891
Hpy188I	TCNGA	4 cut(s)	139, 447, 550, 925
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	6 cut(s)	24, 50, 360, 584, 658, 891
HpyAV	CCTTC	5 cut(s)	25, 31, 233, 731, 836
HpyCH4III	ACNGT	2 cut(s)	57, 895
HpyCH4V	TGCA	7 cut(s)	308, 360, 379, 386, 416, 512, 935
HpyF10VI	GCNNNNNNNGC	4 cut(s)	126, 305, 422, 522
HpyF3I	CTNAG	6 cut(s)	9, 136, 158, 216, 444, 662
Hsp92II	CATG	5 cut(s)	48, 256, 631, 876, 883
Kzo9I	GATC	2 cut(s)	491, 571
LguI	GCTCTTC	1 cut(s)	911
LmnI	GCTCC	4 cut(s)	134, 435, 463, 469
Lsp1109I	GCAGC	4 cut(s)	126, 129, 304, 963
LweI	GCATC	3 cut(s)	317, 843, 954
MaeI	CTAG	1 cut(s)	371
MaeIII	GTNAC	2 cut(s)	328, 345
MalI	GATC	2 cut(s)	493, 573
MbiI	CCGCTC	1 cut(s)	731
MboI	GATC	2 cut(s)	491, 571
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	4 cut(s)	159, 362, 432, 923
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	275, 486, 621
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	645
MmeI	TCCRAC	1 cut(s)	285
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	624
MslI	CAYNNNNRTG	2 cut(s)	11, 884
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	425, 600, 698
MspR9I	CCNGG	2 cut(s)	174, 355
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	2 cut(s)	174, 355
MwoI	GCNNNNNNNGC	4 cut(s)	126, 305, 422, 522
NcoI	CCATGG	1 cut(s)	872
NdeII	GATC	2 cut(s)	491, 571
NlaIII	CATG	5 cut(s)	48, 256, 631, 876, 883
NlaIV	GGNNCC	1 cut(s)	757
NmuCI	GTSAC	2 cut(s)	328, 345
NspI	RCATGY	2 cut(s)	48, 883
PaqCI	CACCTGC	1 cut(s)	330
PciI	ACATGT	1 cut(s)	879
PciSI	GCTCTTC	1 cut(s)	911
PctI	GAATGC	1 cut(s)	388
PfeI	GAWTC	4 cut(s)	67, 505, 545, 740
PkrI	GCNGC	5 cut(s)	116, 119, 294, 730, 953
PleI	GAGTC	1 cut(s)	644
PpsI	GAGTC	1 cut(s)	644
PscI	ACATGT	1 cut(s)	879
Psp124BI	GAGCTC	2 cut(s)	159, 923
Psp6I	CCWGG	2 cut(s)	172, 353
PspGI	CCWGG	2 cut(s)	172, 353
PspN4I	GGNNCC	1 cut(s)	757
PspPI	GGNCC	2 cut(s)	167, 658
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	571
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
RseI	CAYNNNNRTG	2 cut(s)	11, 884
SacI	GAGCTC	2 cut(s)	159, 923
SapI	GCTCTTC	1 cut(s)	911
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	5 cut(s)	115, 118, 293, 729, 952
Sau3AI	GATC	2 cut(s)	491, 571
Sau96I	GGNCC	2 cut(s)	167, 658
SchI	GAGTC	1 cut(s)	645
ScrFI	CCNGG	2 cut(s)	174, 355
SduI	GDGCHC	4 cut(s)	159, 362, 432, 923
SfaNI	GCATC	3 cut(s)	317, 843, 954
SinI	GGWCC	1 cut(s)	658
SmiMI	CAYNNNNRTG	2 cut(s)	11, 884
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	3 cut(s)	275, 486, 621
SsiI	CCGC	3 cut(s)	600, 696, 729
SspMI	CTAG	1 cut(s)	371
SstI	GAGCTC	2 cut(s)	159, 923
StyD4I	CCNGG	2 cut(s)	172, 353
StyI	CCWWGG	1 cut(s)	872
TaaI	ACNGT	2 cut(s)	57, 895
TaqI	TCGA	3 cut(s)	490, 543, 702
TasI	AATT	3 cut(s)	275, 486, 621
TatI	WGTACW	1 cut(s)	23
TauI	GCSGC	1 cut(s)	731
TfiI	GAWTC	4 cut(s)	67, 505, 545, 740
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TscAI	CASTG	2 cut(s)	13, 670
TseFI	GTSAC	2 cut(s)	328, 345
TseI	GCWGC	4 cut(s)	114, 117, 292, 951
Tsp45I	GTSAC	2 cut(s)	328, 345
TspDTI	ATGAA	5 cut(s)	206, 720, 846, 855, 929
TspGWI	ACGGA	1 cut(s)	704
TspRI	CASTG	2 cut(s)	13, 670
VneI	GTGCAC	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	658
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	2 cut(s)	48, 883
XcmI	CCANNNNNNNNNTGG	2 cut(s)	180, 474
XmiI	GTMKAC	1 cut(s)	890
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.