Rw2G034010

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0010805
Physical Location & Seq
Forward (+)
55782847 .. 55787653
4807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G034010.1

Sequence Viewer

Length: 816 bp
ATGAGTCTCTTCTTTCTCTTGGGTACTTCTACAACAGCAGCAGCAATGGAAACCAAACCCACCATTTTGCTTCCTCAGAGAGAATGTCTGCCCTCTCCATGGTCTTCTTCTCCCTCAGGGTACCACCACAACCAGACAAAAGGTCCTTCCTTTCTTCAGTTCTCACCAAGCTCTCAGAGCCTGCCTGTCACCCAGAAGGCGTCACATCCCTGTTGCACTAAAGCGGTAGACTTGCAGAGCGCAGAGAAGAAGAAAGCTTCTGCAAAACCAGCTGTGACCAACAACACTTCTCAGAAAAGAACTGCTCCTGCTCCAGTCGTGGGTTGGCCTCCAATTCGATCTTTTCGGAAGAATCTTGCGAGCACCAGCTCTTCAAAACCAGCACCTGAGTCACAAAGTGTAGCCCCTAGCAAGGTTCCTAATGTTAAACCAGTCGAAACCAACGGAAAAGGCATGTTTGTGAAAATCAATATGGATGGAGTCCCGATTGGACGAAAAGTAGACCTCAGTGCTTATGCCAGCTACGAAAAGCTCTCCTCTGCTGTTGATGAACTCTTCCGTGGGCTCCTTGCAGCTCAAAGAGATTGTTGTGCTGGTGGAATCAAGAACAAGATAGAAGAAGAGAAAGAAATTACAGGTTTATTGGATGGAAGTGGAGAATATACTCTCGTATATGAAGATAATGAGGGTGACAGGATGCTTGTTGGGGATGTCCCATGGCACATGTTTGTGTCTACTGTGAAGAGGTTGCGTGTGCTCAAGAGCTCTGAACTTTCTGCACTTAGTATTCGCAGCGGTAAAGAACTGAAGAACTGA

Protein Analysis

271

Amino Acids

29.28

Weight (kDa)

9.37

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 76 - 263 5.8e-66 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51950 AT3G16500 AT3G16500
fragaria_vesca FvH4_6g32450 FvH4_6g32450
malus_domestica MD09G1202300.v1.1 MD17G1183500.v1.1
prunus_persica Prupe.3G058600_v2.0.a1
pyrus_communis pycom09g11930 pycom17g19260
rosa_chinensis RchiOBHm_Chr2g0140681
rosa_laevigata RLG00000019891
rosa_multiflora Rmu_sc0003342.1_g000011
rosa_roxburghii Rroxscaffold_2G00104590
rosa_rugosa Rorug02G0364000
rosa_samantha Rh2AG415700 Rh2BG425200 Rh2CG401700 Rh2DG435200
rosa_wichuraiana Rw2G034010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 120
AccB1I GGYRCC 1 cut(s) 120
AccI GTMKAC 3 cut(s) 228, 501, 734
AciI CCGC 2 cut(s) 224, 795
AcuI CTGAAG 1 cut(s) 140
AcyI GRCGYC 1 cut(s) 200
AdeI CACNNNGTG 1 cut(s) 398
AfaI GTAC 2 cut(s) 25, 122
AfiI CCNNNNNNNGG 3 cut(s) 99, 320, 412
AflIII ACRYGT 1 cut(s) 723
AgsI TTSAA 1 cut(s) 375
AhdI GACNNNNNGTC 1 cut(s) 141
AluBI AGCT 8 cut(s) 171, 257, 272, 369, 522, 532, 575, 765
AluI AGCT 8 cut(s) 171, 257, 272, 369, 522, 532, 575, 765
Alw21I GWGCWC 3 cut(s) 365, 759, 767
Alw26I GTCTC 1 cut(s) 11
AlwNI CAGNNNCTG 2 cut(s) 181, 386
AoxI GGCC 1 cut(s) 326
ApeKI GCWGC 4 cut(s) 38, 41, 572, 792
Asp718I GGTACC 1 cut(s) 120
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 3 cut(s) 156, 181, 701
AvaII GGWCC 1 cut(s) 143
AxyI CCTNAGG 1 cut(s) 115
BanI GGYRCC 1 cut(s) 120
BanII GRGCYC 2 cut(s) 567, 767
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 3 cut(s) 365, 759, 767
BbvI GCAGC 4 cut(s) 50, 53, 584, 804
BccI CCATC 2 cut(s) 470, 641
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 1 cut(s) 408
BisI GCNGC 4 cut(s) 39, 42, 573, 793
BlsI GCNGC 4 cut(s) 40, 43, 574, 794
Bme18I GGWCC 1 cut(s) 143
BmeRI GACNNNNNGTC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 3 cut(s) 122, 417, 566
BmsI GCATC 1 cut(s) 687
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 743
BsaHI GRCGYC 1 cut(s) 200
BsaJI CCNNGG 3 cut(s) 98, 559, 716
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 320, 412
Bse1I ACTGG 2 cut(s) 314, 431
Bse21I CCTNAGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 51
BseDI CCNNGG 3 cut(s) 98, 559, 716
BseGI GGATG 5 cut(s) 205, 481, 652, 702, 715
BseLI CCNNNNNNNGG 3 cut(s) 99, 320, 412
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 6 cut(s) 89, 129, 188, 305, 378, 520
BseNI ACTGG 2 cut(s) 314, 431
BseRI GAGGAG 1 cut(s) 526
BseXI GCAGC 4 cut(s) 50, 53, 584, 804
BsgI GTGCAG 1 cut(s) 762
BshFI GGCC 1 cut(s) 328
BshNI GGYRCC 1 cut(s) 120
BsiHKAI GWGCWC 3 cut(s) 365, 759, 767
BslFI GGGAC 2 cut(s) 467, 698
BslI CCNNNNNNNGG 3 cut(s) 99, 320, 412
BsmAI GTCTC 1 cut(s) 11
BsmFI GGGAC 2 cut(s) 467, 698
BsnI GGCC 1 cut(s) 328
Bsp1286I GDGCHC 4 cut(s) 365, 567, 759, 767
Bsp143I GATC 1 cut(s) 338
Bsp19I CCATGG 2 cut(s) 98, 716
BspACI CCGC 2 cut(s) 224, 795
BspANI GGCC 1 cut(s) 328
BspCNI CTCAG 6 cut(s) 88, 128, 187, 304, 379, 519
BspLI GGNNCC 3 cut(s) 122, 417, 566
BspQI GCTCTTC 1 cut(s) 376
BspT107I GGYRCC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 51
BsrI ACTGG 2 cut(s) 314, 431
BssECI CCNNGG 3 cut(s) 98, 559, 716
BssMI GATC 1 cut(s) 338
BssNI GRCGYC 1 cut(s) 200
BssT1I CCWWGG 2 cut(s) 98, 716
Bst4CI ACNGT 1 cut(s) 739
Bst6I CTCTTC 5 cut(s) 14, 376, 560, 615, 737
BstACI GRCGYC 1 cut(s) 200
BstC8I GCNNGC 3 cut(s) 182, 361, 520
BstDEI CTNAG 7 cut(s) 75, 115, 174, 291, 387, 506, 782
BstDSI CCRYGG 3 cut(s) 98, 559, 716
BstF5I GGATG 5 cut(s) 205, 481, 652, 702, 715
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 1 cut(s) 341
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 1 cut(s) 338
BstMWI GCNNNNNNNGC 2 cut(s) 177, 269
BstNSI RCATGY 2 cut(s) 457, 727
BstV1I GCAGC 4 cut(s) 50, 53, 584, 804
BstV2I GAAGAC 1 cut(s) 96
Bsu36I CCTNAGG 1 cut(s) 115
BsuRI GGCC 1 cut(s) 328
BtgI CCRYGG 3 cut(s) 98, 559, 716
BtsCI GGATG 5 cut(s) 205, 481, 652, 702, 715
BtsIMutI CAGTG 1 cut(s) 514
Cac8I GCNNGC 3 cut(s) 182, 361, 520
CaiI CAGNNNCTG 2 cut(s) 181, 386
CfoI GCGC 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 143
CseI GACGC 1 cut(s) 189
Csp6I GTAC 2 cut(s) 24, 121
CviAII CATG 4 cut(s) 99, 454, 717, 724
CviQI GTAC 2 cut(s) 24, 121
DdeI CTNAG 7 cut(s) 75, 115, 174, 291, 387, 506, 782
DpnI GATC 1 cut(s) 340
DpnII GATC 1 cut(s) 338
DraIII CACNNNGTG 1 cut(s) 398
DriI GACNNNNNGTC 1 cut(s) 141
Eam1104I CTCTTC 5 cut(s) 14, 376, 560, 615, 737
Eam1105I GACNNNNNGTC 1 cut(s) 141
EarI CTCTTC 5 cut(s) 14, 376, 560, 615, 737
Ecl136II GAGCTC 1 cut(s) 765
Eco130I CCWWGG 2 cut(s) 98, 716
Eco24I GRGCYC 2 cut(s) 567, 767
Eco47I GGWCC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 765
Eco57I CTGAAG 1 cut(s) 140
Eco81I CCTNAGG 1 cut(s) 115
EcoICRI GAGCTC 1 cut(s) 765
EcoO109I RGGNCCY 1 cut(s) 143
EcoT14I CCWWGG 2 cut(s) 98, 716
EcoT38I GRGCYC 2 cut(s) 567, 767
ErhI CCWWGG 2 cut(s) 98, 716
FaeI CATG 4 cut(s) 102, 457, 720, 727
FaiI YATR 9 cut(s) 100, 455, 473, 516, 663, 673, 675, 718, 725
FaqI GGGAC 2 cut(s) 467, 698
FatI CATG 4 cut(s) 98, 453, 716, 723
FblI GTMKAC 3 cut(s) 228, 501, 734
Fnu4HI GCNGC 4 cut(s) 39, 42, 573, 793
FokI GGATG 5 cut(s) 192, 488, 659, 709, 722
FriOI GRGCYC 2 cut(s) 567, 767
Fsp4HI GCNGC 4 cut(s) 39, 42, 573, 793
FspBI CTAG 1 cut(s) 408
GlaI GCGC 1 cut(s) 241
GluI GCNGC 4 cut(s) 39, 42, 573, 793
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 1 cut(s) 328
HgaI GACGC 1 cut(s) 189
HhaI GCGC 1 cut(s) 242
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 4 cut(s) 102, 457, 720, 727
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 5 cut(s) 4, 352, 389, 480, 600
HphI GGTGA 3 cut(s) 156, 181, 701
Hpy166II GTNNAC 3 cut(s) 229, 502, 735
Hpy188I TCNGA 5 cut(s) 78, 177, 294, 348, 769
Hpy188III TCNNGA 3 cut(s) 484, 604, 760
Hpy8I GTNNAC 3 cut(s) 229, 502, 735
HpyAV CCTTC 2 cut(s) 156, 190
HpyCH4III ACNGT 1 cut(s) 739
HpyCH4V TGCA 5 cut(s) 216, 235, 263, 572, 779
HpyF10VI GCNNNNNNNGC 2 cut(s) 177, 269
HpyF3I CTNAG 7 cut(s) 75, 115, 174, 291, 387, 506, 782
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 4 cut(s) 102, 457, 720, 727
HspAI GCGC 1 cut(s) 240
KpnI GGTACC 1 cut(s) 124
Kzo9I GATC 1 cut(s) 338
LguI GCTCTTC 1 cut(s) 376
LmnI GCTCC 3 cut(s) 310, 316, 570
Lsp1109I GCAGC 4 cut(s) 50, 53, 584, 804
LweI GCATC 1 cut(s) 687
MaeI CTAG 1 cut(s) 408
MaeIII GTNAC 5 cut(s) 187, 201, 274, 390, 689
MalI GATC 1 cut(s) 340
MboI GATC 1 cut(s) 338
MhlI GDGCHC 4 cut(s) 365, 567, 759, 767
MluCI AATT 2 cut(s) 333, 630
MlyI GAGTC 3 cut(s) 13, 398, 489
MnlI CCTC 8 cut(s) 84, 103, 124, 339, 515, 547, 679, 738
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 2 cut(s) 458, 728
MspA1I CMGCKG 2 cut(s) 272, 795
MwoI GCNNNNNNNGC 2 cut(s) 177, 269
NcoI CCATGG 2 cut(s) 98, 716
NdeII GATC 1 cut(s) 338
NlaIII CATG 4 cut(s) 102, 457, 720, 727
NlaIV GGNNCC 3 cut(s) 122, 417, 566
NmuCI GTSAC 5 cut(s) 187, 201, 274, 390, 689
NspI RCATGY 2 cut(s) 457, 727
PciI ACATGT 1 cut(s) 723
PciSI GCTCTTC 1 cut(s) 376
PfeI GAWTC 2 cut(s) 352, 600
PkrI GCNGC 4 cut(s) 40, 43, 574, 794
PleI GAGTC 3 cut(s) 12, 397, 488
PpsI GAGTC 3 cut(s) 12, 397, 488
PpuMI RGGWCCY 1 cut(s) 143
PscI ACATGT 1 cut(s) 723
Psp124BI GAGCTC 1 cut(s) 767
Psp5II RGGWCCY 1 cut(s) 143
PspN4I GGNNCC 3 cut(s) 122, 417, 566
PspPI GGNCC 1 cut(s) 143
PspPPI RGGWCCY 1 cut(s) 143
PstNI CAGNNNCTG 2 cut(s) 181, 386
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 2 cut(s) 25, 122
RsaNI GTAC 2 cut(s) 24, 121
RseI CAYNNNNRTG 2 cut(s) 458, 728
SacI GAGCTC 1 cut(s) 767
SapI GCTCTTC 1 cut(s) 376
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 4 cut(s) 39, 42, 573, 793
Sau3AI GATC 1 cut(s) 338
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 3 cut(s) 13, 398, 489
SduI GDGCHC 4 cut(s) 365, 567, 759, 767
SfaNI GCATC 1 cut(s) 687
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 2 cut(s) 458, 728
SmlI CTYRAG 1 cut(s) 758
SmoI CTYRAG 1 cut(s) 758
Sse9I AATT 2 cut(s) 333, 630
SsiI CCGC 2 cut(s) 224, 795
SspMI CTAG 1 cut(s) 408
SstI GAGCTC 1 cut(s) 767
StyI CCWWGG 2 cut(s) 98, 716
TaaI ACNGT 1 cut(s) 739
TaqI TCGA 2 cut(s) 337, 435
TasI AATT 2 cut(s) 333, 630
TfiI GAWTC 2 cut(s) 352, 600
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 5 cut(s) 187, 201, 274, 390, 689
TseI GCWGC 4 cut(s) 38, 41, 572, 792
Tsp45I GTSAC 5 cut(s) 187, 201, 274, 390, 689
TspDTI ATGAA 2 cut(s) 564, 690
TspGWI ACGGA 2 cut(s) 459, 548
TspRI CASTG 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 143
XceI RCATGY 2 cut(s) 457, 727
XcmI CCANNNNNNNNNTGG 1 cut(s) 321
XmiI GTMKAC 3 cut(s) 228, 501, 734
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.