FvH4_6g32450

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010805
Physical Location & Seq
Forward (+)
25495421 .. 25500147
4727 bp
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UTR
Exon/CDS
Intron
FvH4_6g32450.t1

Sequence Viewer

Length: 1008 bp
ATGCAAAAGATGGAGGAGGCATGTCCTCAACTTCTGGATTTGATTCCGAAAGAAAGGGAGTGGCTTGTGAGCAAAGATGAGAGCCATGGCTATTCAGAAGAGAAGAAATTGGAGCTAAGGCTTTGCCCTCCAGGTCAAGACTGGTCAAATCTGAGAGACAACACCTCCAGAGGCCAGAAAGAAAGAGATGAGTCTCTTCTTTCTCTTGGGTACTTCTACAACAGCAGCAGCAGTGGAAACCAAACCCACCATTTTGCTTCCTCAGAGAGAAAGACTGTTCTATCCTCTCCATGGTCTTCATCTCCCTCAGGGTACCCCAACAACCAGACAAAAGGTCCTTCCTTTCTACAGTTCTCACCAAGCTCTCAAAGCCTGCCTGTCACCCAGATGACCTCACAGCCCTGTTGCACTGAAGCGGTAGACTTGCAGAACGCAGAGAAGAAGAAAGCTTCTGCAAATCCAGCTGTGACCAACAACACTTCTCAGAAAAGAACTGCTCCGGCTCCAGTTGTGGGATGGCCTCCAATTAGATCTTTTCGGAAGAATCTTGCGAGCACCAGCGCTTCAAAACCGGCACCTGAGTCACAAAATGTAAACCCCAGCAAGGTTCCTAATGTTAAACCAGTCGAAACCAGCAGAAAAGGCATGTTTGTGAAAATCAATATGGATGGAGTCCCCATTGGACGAAAAGTAGACCTCAGTGCTTATGCCAGCTATGAGAAGCTCTCCTCTGCTGTTGATGAACTCTTTCGTGGGCTCCTTGCAGCTCAAAGAGATTCTTGTGCTGGTGGAATCAAGAACAACATAGATGAAGAGAAAGAAATTACAGGTTTATTGGATGGAAGTGGAGAATATACTCTGGTTTATGAAGATAATGAAGGTGACAGGATGCTTGTTGGAGATGTCCCATGGCACATGTTTGTGTCTACTGTGAAGAGGTTGCGTGTGCTCAAGAGCTCTGAACTTTCTGCACTTAGTATTCGCACTGGTAAAGAACTGAAGAACTGA

Protein Analysis

336

Amino Acids

36.96

Weight (kDa)

8.45

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 37 - 327 2e-68 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51950 AT3G16500 AT3G16500
fragaria_vesca FvH4_6g32450 FvH4_6g32450
malus_domestica MD09G1202300.v1.1 MD17G1183500.v1.1
prunus_persica Prupe.3G058600_v2.0.a1
pyrus_communis pycom09g11930 pycom17g19260
rosa_chinensis RchiOBHm_Chr2g0140681
rosa_laevigata RLG00000019891
rosa_multiflora Rmu_sc0003342.1_g000011
rosa_roxburghii Rroxscaffold_2G00104590
rosa_rugosa Rorug02G0364000
rosa_samantha Rh2AG415700 Rh2BG425200 Rh2CG401700 Rh2DG435200
rosa_wichuraiana Rw2G034010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 312
AccB1I GGYRCC 2 cut(s) 312, 574
AccI GTMKAC 3 cut(s) 420, 693, 926
AciI CCGC 1 cut(s) 416
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 2 cut(s) 212, 314
AfeI AGCGCT 1 cut(s) 562
AfiI CCNNNNNNNGG 3 cut(s) 291, 512, 604
AflIII ACRYGT 1 cut(s) 915
AgsI TTSAA 1 cut(s) 567
AhdI GACNNNNNGTC 1 cut(s) 333
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 8 cut(s) 115, 363, 449, 464, 714, 724, 767, 957
AluI AGCT 8 cut(s) 115, 363, 449, 464, 714, 724, 767, 957
Alw21I GWGCWC 3 cut(s) 557, 951, 959
Alw26I GTCTC 2 cut(s) 150, 198
Aor51HI AGCGCT 1 cut(s) 562
AoxI GGCC 2 cut(s) 172, 518
ApeKI GCWGC 3 cut(s) 225, 228, 764
Asp700I GAANNNNTTC 1 cut(s) 747
Asp718I GGTACC 1 cut(s) 312
AspLEI GCGC 1 cut(s) 563
AspS9I GGNCC 1 cut(s) 335
AsuHPI GGTGA 3 cut(s) 348, 373, 893
AvaII GGWCC 1 cut(s) 335
AxyI CCTNAGG 1 cut(s) 307
BanI GGYRCC 2 cut(s) 312, 574
BanII GRGCYC 2 cut(s) 759, 959
BbsI GAAGAC 1 cut(s) 288
Bbv12I GWGCWC 3 cut(s) 557, 951, 959
BbvI GCAGC 3 cut(s) 237, 240, 776
BccI CCATC 4 cut(s) 4, 510, 662, 833
BciT130I CCWGG 1 cut(s) 132
BcoDI GTCTC 2 cut(s) 150, 198
BfmI CTRYAG 1 cut(s) 347
BfoI RGCGCY 1 cut(s) 564
BglII AGATCT 1 cut(s) 530
BisI GCNGC 3 cut(s) 226, 229, 765
BlsI GCNGC 3 cut(s) 227, 230, 766
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 335
BmeRI GACNNNNNGTC 1 cut(s) 333
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 5 cut(s) 314, 504, 576, 609, 758
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 879
BpiI GAAGAC 1 cut(s) 288
BplI GAGNNNNNCTC 2 cut(s) 710, 742
BpmI CTGGAG 3 cut(s) 114, 151, 489
Bpu10I CCTNAGC 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 935
BsaJI CCNNGG 3 cut(s) 85, 290, 908
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 3 cut(s) 291, 512, 604
Bse118I RCCGGY 1 cut(s) 571
Bse1I ACTGG 4 cut(s) 146, 506, 623, 991
Bse21I CCTNAGG 1 cut(s) 307
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 3 cut(s) 85, 290, 908
BseGI GGATG 4 cut(s) 521, 673, 844, 894
BseLI CCNNNNNNNGG 3 cut(s) 291, 512, 604
BseMII CTCAG 6 cut(s) 143, 276, 321, 497, 570, 712
BseNI ACTGG 4 cut(s) 146, 506, 623, 991
BseRI GAGGAG 2 cut(s) 29, 718
BseXI GCAGC 3 cut(s) 237, 240, 776
BseYI CCCAGC 1 cut(s) 599
BsgI GTGCAG 1 cut(s) 954
BshFI GGCC 2 cut(s) 174, 520
BshNI GGYRCC 2 cut(s) 312, 574
BsiHKAI GWGCWC 3 cut(s) 557, 951, 959
BsiSI CCGG 2 cut(s) 500, 572
BslFI GGGAC 2 cut(s) 659, 890
BslI CCNNNNNNNGG 3 cut(s) 291, 512, 604
BsmAI GTCTC 2 cut(s) 150, 198
BsmFI GGGAC 2 cut(s) 659, 890
BsnI GGCC 2 cut(s) 174, 520
Bsp1286I GDGCHC 4 cut(s) 557, 759, 951, 959
Bsp143I GATC 1 cut(s) 530
Bsp19I CCATGG 3 cut(s) 85, 290, 908
BspACI CCGC 1 cut(s) 416
BspANI GGCC 2 cut(s) 174, 520
BspCNI CTCAG 6 cut(s) 144, 275, 320, 496, 571, 711
BspLI GGNNCC 5 cut(s) 314, 504, 576, 609, 758
BspT107I GGYRCC 2 cut(s) 312, 574
BsrFI RCCGGY 1 cut(s) 571
BsrI ACTGG 4 cut(s) 146, 506, 623, 991
BssAI RCCGGY 1 cut(s) 571
BssECI CCNNGG 3 cut(s) 85, 290, 908
BssMI GATC 1 cut(s) 530
BssT1I CCWWGG 3 cut(s) 85, 290, 908
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 3 cut(s) 277, 351, 931
Bst6I CTCTTC 4 cut(s) 93, 201, 807, 929
BstC8I GCNNGC 3 cut(s) 374, 553, 712
BstDEI CTNAG 8 cut(s) 116, 152, 262, 307, 483, 579, 698, 974
BstDSI CCRYGG 3 cut(s) 85, 290, 908
BstF5I GGATG 4 cut(s) 521, 673, 844, 894
BstH2I RGCGCY 1 cut(s) 564
BstHHI GCGC 1 cut(s) 563
BstKTI GATC 1 cut(s) 533
BstMAI GTCTC 2 cut(s) 150, 198
BstMBI GATC 1 cut(s) 530
BstMWI GCNNNNNNNGC 3 cut(s) 369, 461, 642
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 3 cut(s) 24, 649, 919
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 347
BstV1I GCAGC 3 cut(s) 237, 240, 776
BstV2I GAAGAC 1 cut(s) 288
BstX2I RGATCY 1 cut(s) 530
BstYI RGATCY 1 cut(s) 530
Bsu36I CCTNAGG 1 cut(s) 307
BsuRI GGCC 2 cut(s) 174, 520
BtgI CCRYGG 3 cut(s) 85, 290, 908
BtsCI GGATG 4 cut(s) 521, 673, 844, 894
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 4 cut(s) 238, 408, 706, 984
Cac8I GCNNGC 3 cut(s) 374, 553, 712
CfoI GCGC 1 cut(s) 563
Cfr10I RCCGGY 1 cut(s) 571
Cfr13I GGNCC 1 cut(s) 335
Csp6I GTAC 2 cut(s) 211, 313
CviAII CATG 6 cut(s) 21, 86, 291, 646, 909, 916
CviQI GTAC 2 cut(s) 211, 313
DdeI CTNAG 8 cut(s) 116, 152, 262, 307, 483, 579, 698, 974
DpnI GATC 1 cut(s) 532
DpnII GATC 1 cut(s) 530
DriI GACNNNNNGTC 1 cut(s) 333
Eam1104I CTCTTC 4 cut(s) 93, 201, 807, 929
Eam1105I GACNNNNNGTC 1 cut(s) 333
EarI CTCTTC 4 cut(s) 93, 201, 807, 929
Ecl136II GAGCTC 1 cut(s) 957
Eco130I CCWWGG 3 cut(s) 85, 290, 908
Eco24I GRGCYC 2 cut(s) 759, 959
Eco47I GGWCC 1 cut(s) 335
Eco47III AGCGCT 1 cut(s) 562
Eco53kI GAGCTC 1 cut(s) 957
Eco57I CTGAAG 1 cut(s) 432
Eco81I CCTNAGG 1 cut(s) 307
EcoICRI GAGCTC 1 cut(s) 957
EcoO109I RGGNCCY 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 3 cut(s) 85, 290, 908
EcoT38I GRGCYC 2 cut(s) 759, 959
ErhI CCWWGG 3 cut(s) 85, 290, 908
FaeI CATG 6 cut(s) 24, 89, 294, 649, 912, 919
FalI AAGNNNNNCTT 2 cut(s) 763, 795
FaqI GGGAC 2 cut(s) 659, 890
FatI CATG 6 cut(s) 20, 85, 290, 645, 908, 915
FblI GTMKAC 3 cut(s) 420, 693, 926
Fnu4HI GCNGC 3 cut(s) 226, 229, 765
FokI GGATG 4 cut(s) 528, 680, 851, 901
FriOI GRGCYC 2 cut(s) 759, 959
Fsp4HI GCNGC 3 cut(s) 226, 229, 765
GlaI GCGC 1 cut(s) 562
GluI GCNGC 3 cut(s) 226, 229, 765
GsaI CCCAGC 1 cut(s) 603
GsuI CTGGAG 3 cut(s) 114, 151, 489
HaeII RGCGCY 1 cut(s) 564
HaeIII GGCC 2 cut(s) 174, 520
HapII CCGG 2 cut(s) 500, 572
HhaI GCGC 1 cut(s) 563
Hin1II CATG 6 cut(s) 24, 89, 294, 649, 912, 919
Hin6I GCGC 1 cut(s) 561
HinP1I GCGC 1 cut(s) 561
HindIII AAGCTT 1 cut(s) 447
HinfI GANTC 7 cut(s) 43, 191, 544, 581, 672, 776, 792
HpaII CCGG 2 cut(s) 500, 572
HphI GGTGA 3 cut(s) 348, 373, 893
Hpy166II GTNNAC 4 cut(s) 421, 595, 694, 927
Hpy188I TCNGA 7 cut(s) 48, 97, 153, 265, 486, 540, 961
Hpy188III TCNNGA 5 cut(s) 35, 137, 168, 796, 952
Hpy8I GTNNAC 4 cut(s) 421, 595, 694, 927
HpyAV CCTTC 2 cut(s) 348, 872
HpyCH4III ACNGT 3 cut(s) 277, 351, 931
HpyCH4V TGCA 6 cut(s) 4, 408, 427, 455, 764, 971
HpyF10VI GCNNNNNNNGC 3 cut(s) 369, 461, 642
HpyF3I CTNAG 8 cut(s) 116, 152, 262, 307, 483, 579, 698, 974
Hsp92II CATG 6 cut(s) 24, 89, 294, 649, 912, 919
HspAI GCGC 1 cut(s) 561
KpnI GGTACC 1 cut(s) 316
Kzo9I GATC 1 cut(s) 530
LmnI GCTCC 4 cut(s) 112, 502, 508, 762
Lsp1109I GCAGC 3 cut(s) 237, 240, 776
LweI GCATC 1 cut(s) 879
MaeIII GTNAC 4 cut(s) 379, 466, 582, 881
MalI GATC 1 cut(s) 532
MboI GATC 1 cut(s) 530
MflI RGATCY 1 cut(s) 530
MhlI GDGCHC 4 cut(s) 557, 759, 951, 959
MluCI AATT 3 cut(s) 107, 525, 822
MlyI GAGTC 3 cut(s) 200, 590, 681
MmeI TCCRAC 1 cut(s) 877
MroXI GAANNNNTTC 1 cut(s) 747
MseI TTAA 1 cut(s) 618
MslI CAYNNNNRTG 3 cut(s) 386, 650, 920
MspA1I CMGCKG 1 cut(s) 464
MspI CCGG 2 cut(s) 500, 572
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 369, 461, 642
NcoI CCATGG 3 cut(s) 85, 290, 908
NdeII GATC 1 cut(s) 530
NlaIII CATG 6 cut(s) 24, 89, 294, 649, 912, 919
NlaIV GGNNCC 5 cut(s) 314, 504, 576, 609, 758
NmuCI GTSAC 4 cut(s) 379, 466, 582, 881
NspI RCATGY 3 cut(s) 24, 649, 919
PciI ACATGT 1 cut(s) 915
PdmI GAANNNNTTC 1 cut(s) 747
PfeI GAWTC 4 cut(s) 43, 544, 776, 792
PkrI GCNGC 3 cut(s) 227, 230, 766
PleI GAGTC 3 cut(s) 199, 589, 680
PpsI GAGTC 3 cut(s) 199, 589, 680
PpuMI RGGWCCY 1 cut(s) 335
PscI ACATGT 1 cut(s) 915
Psp124BI GAGCTC 1 cut(s) 959
Psp5II RGGWCCY 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 599
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 5 cut(s) 314, 504, 576, 609, 758
PspPI GGNCC 1 cut(s) 335
PspPPI RGGWCCY 1 cut(s) 335
PsuI RGATCY 1 cut(s) 530
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 2 cut(s) 212, 314
RsaNI GTAC 2 cut(s) 211, 313
RseI CAYNNNNRTG 3 cut(s) 386, 650, 920
SacI GAGCTC 1 cut(s) 959
SaqAI TTAA 1 cut(s) 618
SatI GCNGC 3 cut(s) 226, 229, 765
Sau3AI GATC 1 cut(s) 530
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 3 cut(s) 200, 590, 681
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 4 cut(s) 557, 759, 951, 959
SfaNI GCATC 1 cut(s) 879
SfcI CTRYAG 1 cut(s) 347
SinI GGWCC 1 cut(s) 335
SmiMI CAYNNNNRTG 3 cut(s) 386, 650, 920
SmlI CTYRAG 1 cut(s) 950
SmoI CTYRAG 1 cut(s) 950
Sse9I AATT 3 cut(s) 107, 525, 822
SsiI CCGC 1 cut(s) 416
SstI GAGCTC 1 cut(s) 959
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 3 cut(s) 85, 290, 908
TaaI ACNGT 3 cut(s) 277, 351, 931
TaqI TCGA 1 cut(s) 627
TasI AATT 3 cut(s) 107, 525, 822
TfiI GAWTC 4 cut(s) 43, 544, 776, 792
Tru1I TTAA 1 cut(s) 618
Tru9I TTAA 1 cut(s) 618
TscAI CASTG 4 cut(s) 238, 415, 706, 991
TseFI GTSAC 4 cut(s) 379, 466, 582, 881
TseI GCWGC 3 cut(s) 225, 228, 764
Tsp45I GTSAC 4 cut(s) 379, 466, 582, 881
TspDTI ATGAA 5 cut(s) 288, 756, 825, 882, 891
TspRI CASTG 4 cut(s) 238, 415, 706, 991
VpaK11BI GGWCC 1 cut(s) 335
XceI RCATGY 3 cut(s) 24, 649, 919
XcmI CCANNNNNNNNNTGG 2 cut(s) 138, 513
XmiI GTMKAC 3 cut(s) 420, 693, 926
XmnI GAANNNNTTC 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.